Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq631 132 9e-29 seq1 109 1e-21 seq6910 104 4e-20 >seq631 Length=1316175 Score = 132 bits (146), Expect = 9e-29 Identities = 164/223 (74%), Gaps = 5/223 (2%) Strand=Plus/Minus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| |||||||||||||||||||||||||||||| | |||| |||| || |||| Sbjct 1259095 AGATTGAG-CAATAACAGGTCTGTGATGCCCTTAGATGTACGGGGCTGCACATGCACTAC 1259037 Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225 |||||| | || | || | | ||| || || ||| ||||||| | | || | Sbjct 1259036 ACTGACTGGCTCAGCATGTGCCTACCCTATGCTGGCAGGCGTGGGTAACCCGTTGAACCC 1258977 Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285 | | ||| ||||||| | |||||| ||||| | | | || ||||||| || |||||| Sbjct 1258976 CATTAGTGATGGGGATCAGGGATTGCAGTTATTCCCCATGAATGAGGAATTCCCAGTAAG 1258917 Query 286 CGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 || ||||| ||| ||| ||| |||||||||||||||| Sbjct 1258916 TACGGGTCATAAGCTTGCG----TTAAGTCCCTGCCCTTTGTA 1258878 >seq1 Length=7560343 Score = 109 bits (120), Expect = 1e-21 Identities = 161/224 (72%), Gaps = 3/224 (1%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 ||||||||||||| | ||| | |||| | ||| ||||| ||||||||||||| | Sbjct 2926810 CTTCTTAGAGGGATAAGTGGCGTTCAGCC-ACCCAAGATTGAG-CAATAACAGGTCTAAG 2926867 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||||||||||||||||||| | || || || | | Sbjct 2926868 ATGCCCTTAGATGTCCAGGGCTGCACGCGCGCTACACTGACTGGCTCACCGTGTGCCTAC 2926927 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| | || | ||||| | | || | | ||||| ||||||| | |||| Sbjct 2926928 CCTACACTGGCACACGCAGGTAACCCGTTGAACCCCATTCGTGATGGGGATCAGGGATTG 2926987 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCA 294 |||||||| | | | || ||||||| || |||||| | | |||| Sbjct 2926988 CAATTATTCCCCATGAATGAGGAATTCCCAGTAAGTGTGGGTCA 2927031 >seq6910 Length=4409688 Score = 104 bits (114), Expect = 4e-20 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 114 GCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAG 173 ||||||||||||||||| ||||||||| ||| | |||| ||| || ||||||||||| | Sbjct 2896195 GCAATAACAGGTCTGTGGTGCCCTTAGGTGTCCAGGGCTGCAGGCATGCTACACTGACTG 2896136 Query 174 AGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTG 233 ||| | || | | || ||| | ||| ||||| || | || | | || | Sbjct 2896135 GCTCAATGTGTGCCTACCCCACGCCTGCAGGCACAGGTAACCTGATGAACCCCATTCATA 2896076 Query 234 CTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTC 293 ||||||| | ||||||||| || | || ||||||| || |||||| | | | Sbjct 2896075 ATGGGGATCTGGGATTGCAATTTTTCTCCAGGAATGAGGAATTCCCAGTAAGTAAGGGCC 2896016 Query 294 ATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 || ||| | |||||||| || ||||||||||||| Sbjct 2896015 ATAAGCTTGTGTTGATTAAGTTCCTGCCCTTTGTA 2895981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947057361152