Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= AAMG01002194.1
Length=319
Score E
Sequences producing significant alignments: (Bits) Value
seq6993 356 4e-96
seq9910 264 2e-68
seq7320 232 1e-58
seq8549 136 7e-30
seq5225 131 3e-28
seq8424 118 2e-24
seq7282 107 4e-21
seq11968 96.9 6e-18
seq6860 96.9 6e-18
>seq6993
Length=5165
Score = 356 bits (394), Expect = 4e-96
Identities = 271/319 (85%), Gaps = 1/319 (0%)
Strand=Plus/Plus
Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 706 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 765
Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGC 120
|||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 766 AGCTGCGGGGAGCTGGCAAACGAGCTTTGATCCGCAGATTTCCGAATGGGGAAACCCGG- 824
Query 121 CCTTTGGGTCATTGCATGCTGAATACATAGGTATGCAAAGCGAACGCGGCGAACTGAAAC 180
|| | |||||| | ||||||||||||| | ||||||||| |||||||||||||
Sbjct 825 CCGTAAGGTCATCGTTATCTGAATACATAGGGTAACGAAGCGAACGTGGCGAACTGAAAC 884
Query 181 ATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAAT 240
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 885 ATCTAAGTAGCTACAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAAT 944
Query 241 GGGATGAGCCTTTACGAGATAGTTGAATTGATAGTGGAATCCTCTGGAAATAGGAGCCAT 300
||||| ||||| | || ||| | ||||| || |||||| |||||
Sbjct 945 GGGATCAGCCTGCAAGATTTAGCATCAACGATAGCAAAACGGAATGGAAAGTCCGGCCAT 1004
Query 301 AGCGGGTGATAGCCCCGTA 319
|| ||||||||||||||||
Sbjct 1005 AGTGGGTGATAGCCCCGTA 1023
>seq9910
Length=308115
Score = 264 bits (292), Expect = 2e-68
Identities = 217/263 (83%), Gaps = 1/263 (0%)
Strand=Plus/Minus
Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60
|| ||| ||||||||||||||||||| | |||||| ||| ||||| |||| |||||||
Sbjct 259124 AGAGCATGTGGTGGATGCCTTGGCGATGATAGGCGACGAAAGACGTGATAGCCTGCGATA 259065
Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGC 120
|||| ||||||| ||||| | |||||||||| ||||||| |||||||||||||| |
Sbjct 259064 AGCTTCGGGGAGCTGGCAAATAAGCTTTGATCCGGAGATTTCTGAATGGGGAAACCCACC 259005
Query 121 CCTTTGGGTCATTGCATGCTGAATACATAGGTATGCAAAGCGAACGCGGCGAACTGAAAC 180
| |||| || |||| |||||||||||||||||| | |||||| || ||||||||||
Sbjct 259004 CGCAAGGGT-ATCGCATACTGAATACATAGGTATGCGAGGCGAACCTGGAGAACTGAAAC 258946
Query 181 ATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAAT 240
||||||||| | ||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 258945 ATCTAAGTACCCAGAGGAAAAGACATCAACCGAGATTCCGAAAGTAGTGGCGAGCGAAAT 258886
Query 241 GGGATGAGCCTTTACGAGATAGT 263
||| |||||| | ||||||
Sbjct 258885 CGGAACAGCCTTCTAGTGATAGT 258863
>seq7320
Length=4144
Score = 232 bits (256), Expect = 1e-58
Identities = 246/321 (77%), Gaps = 4/321 (1%)
Strand=Plus/Plus
Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60
|||||| ||||||||||||||||||||||||||||||||||||||| |||| |||| |
Sbjct 1772 AGTGCATATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTGATAGCCTGCGTAA 1831
Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGC 120
|| | ||||||| ||||| | |||||||||| | || ||||||||||||||||| |
Sbjct 1832 AGGTTCGGGGAGCTGGCAAATAAGCTTTGATCCGGACATATCCGAATGGGGAAACCCACC 1891
Query 121 CCTTTGGGTCATTGCATGCTGAATACATAGG--TATGCAAAGCGAACGCGGCGAACTGAA 178
| |||| | || | ||||||| ||||| ||| |||||| | ||||||||
Sbjct 1892 CGCAAGGGTAACCGC-TCCTGAATATATAGGGAGATG-GTGGCGAACCGAGTGAACTGAA 1949
Query 179 ACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAA 238
|||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1950 ACATCTAAGTAGCTCGAGGAAAAGAAATCAACCGAGATTCCGTAAGTAGTGGCGAGCGAA 2009
Query 239 ATGGGATGAGCCTTTACGAGATAGTTGAATTGATAGTGGAATCCTCTGGAAATAGGAGCC 298
||| ||||| | ||| | |||||| ||| |||||| |||
Sbjct 2010 CATGGAACAGCCTGTTATTTTTAGCACATGCGATAGTAGAACGGAATGGAAAGTCCGGCC 2069
Query 299 ATAGCGGGTGATAGCCCCGTA 319
|||| ||||||||||||| ||
Sbjct 2070 ATAGAGGGTGATAGCCCCTTA 2090
>seq8549
Length=2370
Score = 136 bits (150), Expect = 7e-30
Identities = 144/184 (78%), Gaps = 8/184 (4%)
Strand=Plus/Minus
Query 139 CTGAATACATAGGTATGCA-AAGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCAGG 197
|||||||||||||| | | |||||||| ||| |||||||||||||| |||||| | |||
Sbjct 1429 CTGAATACATAGGTTTCGAGAAGCGAACCCGGTGAACTGAAACATCTCAGTAGCCGGAGG 1370
Query 198 AAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGA-GCCTTTAC- 255
|||||| ||||||||||||||| |||||||||||||||| ||| | ||| | |
Sbjct 1369 AAAAGACATCAACCGAGATTCCGTTAGTAGTGGCGAGCGAACGCGGACCAGGCCAGTGCT 1310
Query 256 GAGATAGTTGAATTGATAGTGGAATCCTCTGGAAATAGGAGCCATAGCGGGTGATAGCCC 315
|||| || || ||| ||| | |||||||| | |||||||||||||| |||||
Sbjct 1309 CAGAT--TTCAA---CTAGCAGAACCATCTGGAAAGTTGGGCCATAGCGGGTGACAGCCC 1255
Query 316 CGTA 319
||||
Sbjct 1254 CGTA 1251
Score = 114 bits (126), Expect = 2e-23
Identities = 92/110 (84%), Gaps = 7/110 (6%)
Strand=Plus/Minus
Query 11 GTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGG-- 68
|||||||||||||| ||||||||||||||||||| | | |||||||||||||||
Sbjct 1608 GTGGATGCCTTGGCATGTACAGGCGATGAAGGACGTGGCACGCTGCGATAAGCTGCGGTG 1549
Query 69 -GGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCC 117
|| |||||||| |||||| ||||||||||||||||||||||||||
Sbjct 1548 AGGTGTGAGCAA----CCTTTGACCCGCAGATTTCCGAATGGGGAAACCC 1503
>seq5225
Length=798
Score = 131 bits (144), Expect = 3e-28
Identities = 113/139 (81%), Gaps = 1/139 (1%)
Strand=Plus/Plus
Query 182 TCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATG 241
|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 1 TCTAAGTAGCTGCAGGAACAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAACGAAATG 60
Query 242 GGATGAGCCTT-TACGAGATAGTTGAATTGATAGTGGAATCCTCTGGAAATAGGAGCCAT 300
||| ||||||| ||| ||| | |||| ||| ||| |||||| |||||
Sbjct 61 GGAAGAGCCTTGTACTCTTTAGCAGCATTGTTAGCAGAACGGGATGGAAAGCCCGGCCAT 120
Query 301 AGCGGGTGATAGCCCCGTA 319
||| ||||||||||| |||
Sbjct 121 AGCAGGTGATAGCCCTGTA 139
>seq8424
Length=263062
Score = 118 bits (130), Expect = 2e-24
Identities = 126/163 (77%), Gaps = 5/163 (3%)
Strand=Plus/Minus
Query 158 AAGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATT 217
|||||||| ||| |||||||||||||| |||| | | ||||||||| |||||||||||||
Sbjct 261653 AAGCGAACCCGGAGAACTGAAACATCTCAGTACCCGGAGGAAAAGACATCAACCGAGATT 261594
Query 218 CCCAAAGTAGTGGCGAGCGAAATGGGATGA-GCCTTTACGAGATAGTTGAATTGATAGTG 276
|| |||||||||||||||| ||| | ||| | | ||| ||| ||| |||
Sbjct 261593 CCGTTAGTAGTGGCGAGCGAACGCGGACCAGGCCAGTGCCTGAT-GTTTAAT---TAGCA 261538
Query 277 GAATCCTCTGGAAATAGGAGCCATAGCGGGTGATAGCCCCGTA 319
||| |||||||| |||||||||||||| |||||||||
Sbjct 261537 GAACGATCTGGAAAGTTCGGCCATAGCGGGTGACAGCCCCGTA 261495
Score = 113 bits (124), Expect = 8e-23
Identities = 96/117 (82%), Gaps = 1/117 (1%)
Strand=Plus/Minus
Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60
|| ||| |||||||||||||||| |||||||||||||||||| || |||||||
Sbjct 262137 AGGGCAATTGGTGGATGCCTTGGCATGCACAGGCGATGAAGGACGTGATACGCTGCGATA 262078
Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCC 117
||| ||||||| | || || || |||||||||| |||||||||||||||||||||
Sbjct 262077 AGCGTCGGGGAG-GTGCGAATACCCTTTGATCCGACGATTTCCGAATGGGGAAACCC 262022
Score = 109 bits (120), Expect = 1e-21
Identities = 87/103 (84%), Gaps = 5/103 (5%)
Strand=Plus/Minus
Query 139 CTGAATACATAGGTATGCAAAG---CGAACGCGGCGAACTGAAACATCTAAGTAGCTGCA 195
||||||||||||| | |||| ||||||||| ||||||||||||||||||| | | |
Sbjct 261942 CTGAATACATAGGGGT--AAAGTGGCGAACGCGGGGAACTGAAACATCTAAGTACCCGTA 261885
Query 196 GGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAA 238
||||| || ||||||||||| ||| |||||||||||||||||
Sbjct 261884 GGAAAGGACATCAACCGAGACTCCGCAAGTAGTGGCGAGCGAA 261842
>seq7282
Length=3089
Score = 107 bits (118), Expect = 4e-21
Identities = 85/102 (83%), Gaps = 0/102 (0%)
Strand=Plus/Plus
Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60
|| |||| ||||||||||||||||||| | |||||| ||| ||||| |||| |||||||
Sbjct 2909 AGAGCACGTGGTGGATGCCTTGGCGATGATAGGCGACGAAAGACGTGATAGCCTGCGATA 2968
Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTC 102
|||| ||||||| ||||| | |||||||||| |||||||
Sbjct 2969 AGCTTCGGGGAGCTGGCAAATAAGCTTTGATCCGGAGATTTC 3010
>seq11968
Length=3642
Score = 96.9 bits (106), Expect = 6e-18
Identities = 87/108 (81%), Gaps = 1/108 (1%)
Strand=Plus/Plus
Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69
||||||||||||||| | | |||||||||| ||||| ||| |||||||||| |||
Sbjct 1296 GGTGGATGCCTTGGCACTGAGAGGCGATGAAAGACGTGGTACGCTGCGATAAGCCTTGGG 1355
Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCC 117
||| || |||| |||||||||| |||||| ||||||||||||||
Sbjct 1356 GAG-CTGCGAACAAGCTTTGATCCGAGGATTTCTGAATGGGGAAACCC 1402
Score = 86.0 bits (94), Expect = 1e-14
Identities = 67/80 (84%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 159 AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTC 218
||| ||| ||| ||||||||||||||||||| | | |||||| || |||||| |||| ||
Sbjct 1504 AGCAAACCCGGGGAACTGAAACATCTAAGTACCCGGAGGAAAGGACATCAACAGAGACTC 1563
Query 219 CCAAAGTAGTGGCGAGCGAA 238
| ||||||||||||||||
Sbjct 1564 CGTTAGTAGTGGCGAGCGAA 1583
>seq6860
Length=6169
Score = 96.9 bits (106), Expect = 6e-18
Identities = 87/108 (81%), Gaps = 1/108 (1%)
Strand=Plus/Plus
Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69
|||||||||||||||| | | |||||||||||||||| || |||||||||| | | |
Sbjct 3298 GGTGGATGCCTTGGCGCTGAGAGGCGATGAAGGACGTGCTACGCTGCGATAAGCCGTGAG 3357
Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCC 117
||| || || ||||||||| | |||||||||||||||||||||
Sbjct 3358 GAG-CTGCGAAGGAGCTTTGATCCACGGATTTCCGAATGGGGAAACCC 3404
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 918261698144
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