Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq6993 356 4e-96 seq9910 264 2e-68 seq7320 232 1e-58 seq8549 136 7e-30 seq5225 131 3e-28 seq8424 118 2e-24 seq7282 107 4e-21 seq11968 96.9 6e-18 seq6860 96.9 6e-18 >seq6993 Length=5165 Score = 356 bits (394), Expect = 4e-96 Identities = 271/319 (85%), Gaps = 1/319 (0%) Strand=Plus/Plus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 706 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 765 Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGC 120 |||||||||||| |||||| ||||||||||||||||||||||||||||||||||| Sbjct 766 AGCTGCGGGGAGCTGGCAAACGAGCTTTGATCCGCAGATTTCCGAATGGGGAAACCCGG- 824 Query 121 CCTTTGGGTCATTGCATGCTGAATACATAGGTATGCAAAGCGAACGCGGCGAACTGAAAC 180 || | |||||| | ||||||||||||| | ||||||||| ||||||||||||| Sbjct 825 CCGTAAGGTCATCGTTATCTGAATACATAGGGTAACGAAGCGAACGTGGCGAACTGAAAC 884 Query 181 ATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAAT 240 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 885 ATCTAAGTAGCTACAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAAT 944 Query 241 GGGATGAGCCTTTACGAGATAGTTGAATTGATAGTGGAATCCTCTGGAAATAGGAGCCAT 300 ||||| ||||| | || ||| | ||||| || |||||| ||||| Sbjct 945 GGGATCAGCCTGCAAGATTTAGCATCAACGATAGCAAAACGGAATGGAAAGTCCGGCCAT 1004 Query 301 AGCGGGTGATAGCCCCGTA 319 || |||||||||||||||| Sbjct 1005 AGTGGGTGATAGCCCCGTA 1023 >seq9910 Length=308115 Score = 264 bits (292), Expect = 2e-68 Identities = 217/263 (83%), Gaps = 1/263 (0%) Strand=Plus/Minus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60 || ||| ||||||||||||||||||| | |||||| ||| ||||| |||| ||||||| Sbjct 259124 AGAGCATGTGGTGGATGCCTTGGCGATGATAGGCGACGAAAGACGTGATAGCCTGCGATA 259065 Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGC 120 |||| ||||||| ||||| | |||||||||| ||||||| |||||||||||||| | Sbjct 259064 AGCTTCGGGGAGCTGGCAAATAAGCTTTGATCCGGAGATTTCTGAATGGGGAAACCCACC 259005 Query 121 CCTTTGGGTCATTGCATGCTGAATACATAGGTATGCAAAGCGAACGCGGCGAACTGAAAC 180 | |||| || |||| |||||||||||||||||| | |||||| || |||||||||| Sbjct 259004 CGCAAGGGT-ATCGCATACTGAATACATAGGTATGCGAGGCGAACCTGGAGAACTGAAAC 258946 Query 181 ATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAAT 240 ||||||||| | ||||||||| ||||||||||||||| |||||||||||||||||||| Sbjct 258945 ATCTAAGTACCCAGAGGAAAAGACATCAACCGAGATTCCGAAAGTAGTGGCGAGCGAAAT 258886 Query 241 GGGATGAGCCTTTACGAGATAGT 263 ||| |||||| | |||||| Sbjct 258885 CGGAACAGCCTTCTAGTGATAGT 258863 >seq7320 Length=4144 Score = 232 bits (256), Expect = 1e-58 Identities = 246/321 (77%), Gaps = 4/321 (1%) Strand=Plus/Plus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60 |||||| ||||||||||||||||||||||||||||||||||||||| |||| |||| | Sbjct 1772 AGTGCATATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTGATAGCCTGCGTAA 1831 Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGC 120 || | ||||||| ||||| | |||||||||| | || ||||||||||||||||| | Sbjct 1832 AGGTTCGGGGAGCTGGCAAATAAGCTTTGATCCGGACATATCCGAATGGGGAAACCCACC 1891 Query 121 CCTTTGGGTCATTGCATGCTGAATACATAGG--TATGCAAAGCGAACGCGGCGAACTGAA 178 | |||| | || | ||||||| ||||| ||| |||||| | |||||||| Sbjct 1892 CGCAAGGGTAACCGC-TCCTGAATATATAGGGAGATG-GTGGCGAACCGAGTGAACTGAA 1949 Query 179 ACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAA 238 |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1950 ACATCTAAGTAGCTCGAGGAAAAGAAATCAACCGAGATTCCGTAAGTAGTGGCGAGCGAA 2009 Query 239 ATGGGATGAGCCTTTACGAGATAGTTGAATTGATAGTGGAATCCTCTGGAAATAGGAGCC 298 ||| ||||| | ||| | |||||| ||| |||||| ||| Sbjct 2010 CATGGAACAGCCTGTTATTTTTAGCACATGCGATAGTAGAACGGAATGGAAAGTCCGGCC 2069 Query 299 ATAGCGGGTGATAGCCCCGTA 319 |||| ||||||||||||| || Sbjct 2070 ATAGAGGGTGATAGCCCCTTA 2090 >seq8549 Length=2370 Score = 136 bits (150), Expect = 7e-30 Identities = 144/184 (78%), Gaps = 8/184 (4%) Strand=Plus/Minus Query 139 CTGAATACATAGGTATGCA-AAGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCAGG 197 |||||||||||||| | | |||||||| ||| |||||||||||||| |||||| | ||| Sbjct 1429 CTGAATACATAGGTTTCGAGAAGCGAACCCGGTGAACTGAAACATCTCAGTAGCCGGAGG 1370 Query 198 AAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGA-GCCTTTAC- 255 |||||| ||||||||||||||| |||||||||||||||| ||| | ||| | | Sbjct 1369 AAAAGACATCAACCGAGATTCCGTTAGTAGTGGCGAGCGAACGCGGACCAGGCCAGTGCT 1310 Query 256 GAGATAGTTGAATTGATAGTGGAATCCTCTGGAAATAGGAGCCATAGCGGGTGATAGCCC 315 |||| || || ||| ||| | |||||||| | |||||||||||||| ||||| Sbjct 1309 CAGAT--TTCAA---CTAGCAGAACCATCTGGAAAGTTGGGCCATAGCGGGTGACAGCCC 1255 Query 316 CGTA 319 |||| Sbjct 1254 CGTA 1251 Score = 114 bits (126), Expect = 2e-23 Identities = 92/110 (84%), Gaps = 7/110 (6%) Strand=Plus/Minus Query 11 GTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGG-- 68 |||||||||||||| ||||||||||||||||||| | | ||||||||||||||| Sbjct 1608 GTGGATGCCTTGGCATGTACAGGCGATGAAGGACGTGGCACGCTGCGATAAGCTGCGGTG 1549 Query 69 -GGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCC 117 || |||||||| |||||| |||||||||||||||||||||||||| Sbjct 1548 AGGTGTGAGCAA----CCTTTGACCCGCAGATTTCCGAATGGGGAAACCC 1503 >seq5225 Length=798 Score = 131 bits (144), Expect = 3e-28 Identities = 113/139 (81%), Gaps = 1/139 (1%) Strand=Plus/Plus Query 182 TCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATG 241 |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| Sbjct 1 TCTAAGTAGCTGCAGGAACAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAACGAAATG 60 Query 242 GGATGAGCCTT-TACGAGATAGTTGAATTGATAGTGGAATCCTCTGGAAATAGGAGCCAT 300 ||| ||||||| ||| ||| | |||| ||| ||| |||||| ||||| Sbjct 61 GGAAGAGCCTTGTACTCTTTAGCAGCATTGTTAGCAGAACGGGATGGAAAGCCCGGCCAT 120 Query 301 AGCGGGTGATAGCCCCGTA 319 ||| ||||||||||| ||| Sbjct 121 AGCAGGTGATAGCCCTGTA 139 >seq8424 Length=263062 Score = 118 bits (130), Expect = 2e-24 Identities = 126/163 (77%), Gaps = 5/163 (3%) Strand=Plus/Minus Query 158 AAGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATT 217 |||||||| ||| |||||||||||||| |||| | | ||||||||| ||||||||||||| Sbjct 261653 AAGCGAACCCGGAGAACTGAAACATCTCAGTACCCGGAGGAAAAGACATCAACCGAGATT 261594 Query 218 CCCAAAGTAGTGGCGAGCGAAATGGGATGA-GCCTTTACGAGATAGTTGAATTGATAGTG 276 || |||||||||||||||| ||| | ||| | | ||| ||| ||| ||| Sbjct 261593 CCGTTAGTAGTGGCGAGCGAACGCGGACCAGGCCAGTGCCTGAT-GTTTAAT---TAGCA 261538 Query 277 GAATCCTCTGGAAATAGGAGCCATAGCGGGTGATAGCCCCGTA 319 ||| |||||||| |||||||||||||| ||||||||| Sbjct 261537 GAACGATCTGGAAAGTTCGGCCATAGCGGGTGACAGCCCCGTA 261495 Score = 113 bits (124), Expect = 8e-23 Identities = 96/117 (82%), Gaps = 1/117 (1%) Strand=Plus/Minus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60 || ||| |||||||||||||||| |||||||||||||||||| || ||||||| Sbjct 262137 AGGGCAATTGGTGGATGCCTTGGCATGCACAGGCGATGAAGGACGTGATACGCTGCGATA 262078 Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCC 117 ||| ||||||| | || || || |||||||||| ||||||||||||||||||||| Sbjct 262077 AGCGTCGGGGAG-GTGCGAATACCCTTTGATCCGACGATTTCCGAATGGGGAAACCC 262022 Score = 109 bits (120), Expect = 1e-21 Identities = 87/103 (84%), Gaps = 5/103 (5%) Strand=Plus/Minus Query 139 CTGAATACATAGGTATGCAAAG---CGAACGCGGCGAACTGAAACATCTAAGTAGCTGCA 195 ||||||||||||| | |||| ||||||||| ||||||||||||||||||| | | | Sbjct 261942 CTGAATACATAGGGGT--AAAGTGGCGAACGCGGGGAACTGAAACATCTAAGTACCCGTA 261885 Query 196 GGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAA 238 ||||| || ||||||||||| ||| ||||||||||||||||| Sbjct 261884 GGAAAGGACATCAACCGAGACTCCGCAAGTAGTGGCGAGCGAA 261842 >seq7282 Length=3089 Score = 107 bits (118), Expect = 4e-21 Identities = 85/102 (83%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60 || |||| ||||||||||||||||||| | |||||| ||| ||||| |||| ||||||| Sbjct 2909 AGAGCACGTGGTGGATGCCTTGGCGATGATAGGCGACGAAAGACGTGATAGCCTGCGATA 2968 Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTC 102 |||| ||||||| ||||| | |||||||||| ||||||| Sbjct 2969 AGCTTCGGGGAGCTGGCAAATAAGCTTTGATCCGGAGATTTC 3010 >seq11968 Length=3642 Score = 96.9 bits (106), Expect = 6e-18 Identities = 87/108 (81%), Gaps = 1/108 (1%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||||||||||| | | |||||||||| ||||| ||| |||||||||| ||| Sbjct 1296 GGTGGATGCCTTGGCACTGAGAGGCGATGAAAGACGTGGTACGCTGCGATAAGCCTTGGG 1355 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCC 117 ||| || |||| |||||||||| |||||| |||||||||||||| Sbjct 1356 GAG-CTGCGAACAAGCTTTGATCCGAGGATTTCTGAATGGGGAAACCC 1402 Score = 86.0 bits (94), Expect = 1e-14 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 159 AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTC 218 ||| ||| ||| ||||||||||||||||||| | | |||||| || |||||| |||| || Sbjct 1504 AGCAAACCCGGGGAACTGAAACATCTAAGTACCCGGAGGAAAGGACATCAACAGAGACTC 1563 Query 219 CCAAAGTAGTGGCGAGCGAA 238 | |||||||||||||||| Sbjct 1564 CGTTAGTAGTGGCGAGCGAA 1583 >seq6860 Length=6169 Score = 96.9 bits (106), Expect = 6e-18 Identities = 87/108 (81%), Gaps = 1/108 (1%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 |||||||||||||||| | | |||||||||||||||| || |||||||||| | | | Sbjct 3298 GGTGGATGCCTTGGCGCTGAGAGGCGATGAAGGACGTGCTACGCTGCGATAAGCCGTGAG 3357 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCC 117 ||| || || ||||||||| | ||||||||||||||||||||| Sbjct 3358 GAG-CTGCGAAGGAGCTTTGATCCACGGATTTCCGAATGGGGAAACCC 3404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918261698144