Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq7106 331 3e-88 seq8852 322 2e-85 seq79 223 1e-55 seq6162 174 5e-41 seq7980 161 3e-37 seq1763 152 2e-34 seq8353 125 2e-26 seq8079 120 1e-24 seq14669 113 1e-22 seq4112 111 5e-22 seq711 102 3e-19 seq10211 95.1 4e-17 seq6713 91.5 5e-16 seq2548 89.7 2e-15 seq7584 87.8 6e-15 seq13435 86.0 2e-14 seq10357 77.0 1e-11 seq11968 75.2 4e-11 >seq7106 Length=3003390 Score = 331 bits (366), Expect = 3e-88 Identities = 254/298 (85%), Gaps = 5/298 (2%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||||||||||| |||| | ||| ||||| | | |||||||||||| |||| Sbjct 1611104 CTCCCACTTATTCTATACCTTTT--GTCTCTTCACCTTGCCACACTAGAGTCAAGTTCAA 1611161 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||||||||||||| ||||||||| |||||||||||||||||||| | | Sbjct 1611162 TAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCATTCCCTTGGCTGTGGTTTCGATGG 1611221 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||| ||| ||||||||||||||| | |||||||| || | |||| |||| ||||| Sbjct 1611222 ATAGTAGGTAGAGACAGTGGGAATCTC--TCATCCATTCGTGTGAGTCATTAATCAGATG 1611279 Query 417 ACGAGGCA-TTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTG 475 || ||||| |||||||| |||||||||||||| |||||||||||| ||| | | |||| Sbjct 1611280 ACAAGGCATTTTGGCTATCTTAAGAGAGTCATGGTTACTCCCGCCACTTAGCAGTGCTTC 1611339 Query 476 GTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 | ||||||||||| ||||||||||||||||||||||||||||||||| || |||||| Sbjct 1611340 ATGGAATTTCTTCAGTTTGACATTCAGAGCACTGGGCAGAAATCACATCGCATCAACA 1611397 >seq8852 Length=5767888 Score = 322 bits (356), Expect = 2e-85 Identities = 252/300 (84%), Gaps = 1/300 (0%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||| |||||||||||| || ||||| | | |||||||||||||||||| Sbjct 1646625 CTCCCACTTACTCTACACCTCTCGTATCTCTTCACTGTGCCAGACTAGAGTCAAGCTCAA 1646566 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 ||| |||||||||||| | |||||| |||||||| |||||||||||||||||||| || | Sbjct 1646565 CAGTGTCTTCTTTCCCAGATGATTCTGCCAAGCCTGTTCCCTTGGCTGTGGTTTC-CTGG 1646507 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||| |||||||| ||||||||| ||| |||||||||| || ||| |||||| ||| Sbjct 1646506 ATAGTAGGTAGGGACAATGGGAATCTGGTTCATCCATTCATCTGCATCAGTAATTACATG 1646447 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476 | ||||| |||||||| |||||||||||||| |||||||| || ||||| || ||| Sbjct 1646446 ATGAGGCTTTTGGCTATCTTAAGAGAGTCATCATTACTCCCACCAGTTACCTGCCCTTCA 1646387 Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCA 536 ||||||||||| ||| |||||||||| | |||| ||||||||||||| ||||||| || Sbjct 1646386 TTGAATTTCTTTACTATGACATTCAGTGGACTGAGCAGAAATCACATCAGGTCAACACCA 1646327 >seq79 Length=3541318 Score = 223 bits (246), Expect = 1e-55 Identities = 173/206 (84%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||||||||||||| ||||| ||| ||||| | | | ||||||||||||| |||| Sbjct 2708187 CTCCCACTTATTCTACATGTCTCAGGTCTCTTCACCATGCCAGACTAGAGTCAAGTTCAA 2708128 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 ||||||| ||||||| |||||||| |||| || ||||||||||||||||||| ||||| Sbjct 2708127 TAGGGTCTCCTTTCCCTGCTGATTCTGCCACACCTGTTCCCTTGGCTGTGGTTTTGCTAG 2708068 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||| |||||||| ||||| |||| || |||||||||| |||||||| || || Sbjct 2708067 ATAGTAGGTAGGGACAATGGGAGTCTCCTTCATCCATTCATAGATGTCACTAACTATATA 2708008 Query 417 ACGAGGCATTTGGCTACCTTAAGAGA 442 | ||||||| | |||||||||||||| Sbjct 2708007 ATGAGGCATCTAGCTACCTTAAGAGA 2707982 >seq6162 Length=4966695 Score = 174 bits (192), Expect = 5e-41 Identities = 126/146 (86%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||||||||||||||||| || ||||| | | ||||||| ||| ||||| Sbjct 4937579 CTCCCACTTATTCTACACCTCTCATTTCTCTTCACCATGCTAGACTAGAATCAGTCTCAA 4937520 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||| |||| |||| |||||||| ||||||||| ||||||||||||||||||| || | Sbjct 4937519 CAGGGTTTTCTCTCCCTGCTGATTCAGCCAAGCCCATTCCCTTGGCTGTGGTTTCACTGG 4937460 Query 357 ATAGTAGATAGGGACAGTGGGAATCT 382 ||||||| |||||||||||||||||| Sbjct 4937459 ATAGTAGGTAGGGACAGTGGGAATCT 4937434 Score = 86.0 bits (94), Expect = 2e-14 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| || || | |||| ||||||| |||| |||| ||||||||||||||| ||| Sbjct 3286973 CTTCTGTTCCATGGGAGGTTTCTGTCCTCCCTGAGCTTGCCTTAGGACACCTGCATTACT 3286914 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 |||| |||| ||| | ||||||| || ||||| |||||| || |||| Sbjct 3286913 GTTTGACAGGTGTACTGCCCCAGTCAGACTCCTCACCTGGCACTGTC 3286867 >seq7980 Length=3121267 Score = 161 bits (178), Expect = 3e-37 Identities = 133/161 (83%), Gaps = 2/161 (1%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||||||||||||||||| ||| || || | | | | ||||||| || ||||| Sbjct 2949616 CTCCCACTTATTCTACACCTCTCATGTCTCTTGACCATGCCAGGCTAGAGTTAAACTCAA 2949675 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||| ||||| ||||||||| ||||||| |||||||| | |||| | ||| | Sbjct 2949676 CAGGGTCTTCATTCCCTGCTGATTCCACCAAGCCTATTCCCTTGAC--TGGTATTGCTGG 2949733 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCAT 397 ||||||| |||||| |||| ||| || ||| |||||||||| Sbjct 2949734 ATAGTAGGTAGGGATAGTGCGAACCTTGTTCATCCATTCAT 2949774 >seq1763 Length=3396493 Score = 152 bits (168), Expect = 2e-34 Identities = 120/143 (84%), Gaps = 3/143 (2%) Strand=Plus/Minus Query 356 GATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGAT 415 || ||||| ||||||| ||||| ||||||| || |||||||||| |||| ||||| ||| Sbjct 1440312 GACAGTAGGTAGGGACCATGGGACTCTCGTTCATTCATTCATGCGTGTCATTAATTGGAT 1440253 Query 416 GACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTG 475 || |||||||||||||||||||||||||||||| |||||||| |||||||| | || Sbjct 1440252 GATGAGGCATTTGGCTACCTTAAGAGAGTCATACTTACTCCCACCGTTTAC---CACTCC 1440196 Query 476 GTTGAATTTCTTCACTTTGACAT 498 ||||||||||||||| |||| Sbjct 1440195 ACTGAATTTCTTCACTTCAACAT 1440173 >seq8353 Length=2157682 Score = 125 bits (138), Expect = 2e-26 Identities = 89/102 (87%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 348 TTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACT 407 ||| ||| ||||||| | |||||||||||||||||| | |||||| || || | ||||| Sbjct 259965 TTTTGCTGGATAGTAAAAAGGGACAGTGGGAATCTCACTCATCCATACACGCACATCACT 260024 Query 408 AATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAG 449 |||||||||| ||||||||||| ||||||||||||||||||| Sbjct 260025 AATTAGATGATGAGGCATTTGGATACCTTAAGAGAGTCATAG 260066 >seq8079 Length=1648050 Score = 120 bits (132), Expect = 1e-24 Identities = 99/121 (82%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 406 CTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTA 465 |||||||||||| ||||||||||||||||| ||||| | |||||||| | | |||| Sbjct 470158 CTAATTAGATGATAAGGCATTTGGCTACCTTGAGAGATTGTTAGTTACTTTCATCATTTA 470099 Query 466 CCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTG 525 || | ||| ||| |||||||||||||||| |||||| |||| ||||||||||| | || Sbjct 470098 CCAGAACTTCATTGTATTTCTTCACTTTGACGTTCAGAACACTAGGCAGAAATCATACTG 470039 Query 526 C 526 | Sbjct 470038 C 470038 >seq14669 Length=386321 Score = 113 bits (124), Expect = 1e-22 Identities = 89/107 (83%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||||||||||| | |||||||||| |||| | |||||||| ||||| |||| Sbjct 173186 CTTCTGCTCTACAGGAGGTCTCTGTTCTCCCTGAGCTCACCTTAGGATACCTGTGTTACC 173245 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||| |||| ||| ||||||||| ||||||||||||||| || |||| Sbjct 173246 ATTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGGCACTGTC 173292 >seq4112 Length=609690 Score = 111 bits (122), Expect = 5e-22 Identities = 75/84 (89%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 259 CAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGA 318 || ||| ||||| | |||||||||||||||||||||||||||||||||||| ||||| Sbjct 563194 CATGTCTCTTCACCGTGCCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCTGCTGA 563253 Query 319 TTCCGCCAAGCCCGTTCCCTTGGC 342 ||||||||| |||||||||||||| Sbjct 563254 TTCCGCCAAACCCGTTCCCTTGGC 563277 >seq711 Length=9888423 Score = 102 bits (112), Expect = 3e-19 Identities = 116/152 (76%), Gaps = 3/152 (2%) Strand=Plus/Plus Query 372 AGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCT 431 |||| |||||| | | || |||||| | ||| || |||||||||||| || || |||| Sbjct 4268801 AGTGAGAATCTTGGTCATGAATTCATACATGTCTCTGATTAGATGACGAAGCGTT-GGCT 4268859 Query 432 ACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACT 491 ||||||||||| ||||||||||| ||| |||| ||| ||||||||||||||| Sbjct 4268860 ACCTTAAGAGATTCATAGTTACT-GTGCCATTTA-TTTAACTTCATTGAATTTCTTCACT 4268917 Query 492 TTGACATTCAGAGCACTGGGCAGAAATCACAT 523 ||||||| | | ||||||| ||| || || Sbjct 4268918 GTGACATTGAATGTGCTGGGCAAAAACCATAT 4268949 >seq10211 Length=3712714 Score = 95.1 bits (104), Expect = 4e-17 Identities = 117/159 (74%), Gaps = 1/159 (1%) Strand=Plus/Plus Query 285 AGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTG 344 ||||| | |||| | ||| || | || | |||| ||||| || ||| |||||||| Sbjct 1975204 AGTCAGGTTCAATGGAGTCCTCGTCATCCACAGATTTTGCCAAACCA-TTCTCTTGGCTG 1975262 Query 345 TGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTC 404 | ||||| ||| | ||| | || ||| ||||| || || ||||||||||| ||| Sbjct 1975263 TAGTTTCATCAGAAAATAGGTGAAGAGAGTAGGAATATCATTCTTCCATTCATGCATGTC 1975322 Query 405 ACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAG 443 ||||||||||| |||| |||| || |||||||||||| Sbjct 1975323 TCTAATTAGATGCTGAGGAATTTAGCCACCTTAAGAGAG 1975361 >seq6713 Length=4903966 Score = 91.5 bits (100), Expect = 5e-16 Identities = 74/87 (85%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 374 TGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTAC 433 |||||| ||| || ||||||||||| || |||||||| |||||| ||| |||||| ||| Sbjct 4067311 TGGGAAGCTC-TTCATCCATTCATGTGCA-CACTAATTGGATGACCAGGAATTTGGGTAC 4067368 Query 434 CTTAAGAGAGTCATAGTTACTCCCGCC 460 ||||| ||||||||||||| ||| ||| Sbjct 4067369 CTTAAAAGAGTCATAGTTATTCCTGCC 4067395 >seq2548 Length=1674112 Score = 89.7 bits (98), Expect = 2e-15 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 306 CTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT 365 |||||||| |||||||| |||||| ||||||||||||||| ||| ||| ||||| | Sbjct 818907 CTTTCCCCACTGATTCCACCAAGCTTGTTCCCTTGGCTGTGATTTTGCTGTGTAGTAAGT 818966 Query 366 AGGGACAGTGGGAATCTCGTTAATCCATTCAT 397 ||||||||| | ||||| || |||||| ||| Sbjct 818967 AGGGACAGTAAGGATCTCATTCATCCATACAT 818998 >seq7584 Length=794560 Score = 87.8 bits (96), Expect = 6e-15 Identities = 82/103 (80%), Gaps = 1/103 (1%) Strand=Plus/Minus Query 11 TGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGTTT 70 |||| || |||| ||||||| ||| |||| | ||||||||||||||||||| ||| Sbjct 198851 TGCTTCACGGGAGGTTTCTGTCTTCCCTGAGCTCGCCTTAGGACACCTGCGTTA-CCTTT 198793 Query 71 AACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 |||| | | || |||||| ||||||||||||||| || |||| Sbjct 198792 GACAGGTATACCACCCCAGTCAAACTCCCCACCTGGCACTGTC 198750 >seq13435 Length=492982 Score = 86.0 bits (94), Expect = 2e-14 Identities = 83/106 (78%), Gaps = 2/106 (2%) Strand=Plus/Plus Query 8 TTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGG 67 || ||| | ||||||| ||||||| |||| | || | ||| || ||||||| ||| Sbjct 10162 TTCTGCCCCACAGGAGGTTTCTGTCCTCCCTAAGCTCGCCTCAGAACACCTG--TTACCA 10219 Query 68 TTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||| |||| ||| ||||||||| ||||||||||||||| || |||| Sbjct 10220 TTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGGCATTGTC 10265 >seq10357 Length=2830096 Score = 77.0 bits (84), Expect = 1e-11 Identities = 74/95 (78%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| | |||| ||||||| ||| |||| | ||| |||||||| | |||| Sbjct 677513 CTTCTGCTCCATGGGAGGTTTCTGTCCTCTCTGAGCTCGCCTGAGGACACCCGTGTTACA 677572 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCA 101 |||| |||| ||| || |||||| ||||||||||| Sbjct 677573 GTTTGACAGGTGTACCACCCCAGTCAAACTCCCCA 677607 >seq11968 Length=3642 Score = 75.2 bits (82), Expect = 4e-11 Identities = 80/106 (75%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 369 GACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTG 428 ||||||||| | |||||| |||||| ||| ||| | ||| ||| ||| |||| Sbjct 3200 GACAGTGGGGAAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTC 3141 Query 429 GCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 474 ||||||||| || || |||||||| |||||||||||| | |||| Sbjct 3140 GCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACCGGGGCTT 3095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634953755232