Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq7106 331 3e-88
seq8852 322 2e-85
seq79 223 1e-55
seq6162 174 5e-41
seq7980 161 3e-37
seq1763 152 2e-34
seq8353 125 2e-26
seq8079 120 1e-24
seq14669 113 1e-22
seq4112 111 5e-22
seq711 102 3e-19
seq10211 95.1 4e-17
seq6713 91.5 5e-16
seq2548 89.7 2e-15
seq7584 87.8 6e-15
seq13435 86.0 2e-14
seq10357 77.0 1e-11
seq11968 75.2 4e-11
>seq7106
Length=3003390
Score = 331 bits (366), Expect = 3e-88
Identities = 254/298 (85%), Gaps = 5/298 (2%)
Strand=Plus/Plus
Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296
||||||||||||||| |||| | ||| ||||| | | |||||||||||| ||||
Sbjct 1611104 CTCCCACTTATTCTATACCTTTT--GTCTCTTCACCTTGCCACACTAGAGTCAAGTTCAA 1611161
Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356
|||||||||||||||||||||||| ||||||||| |||||||||||||||||||| | |
Sbjct 1611162 TAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCATTCCCTTGGCTGTGGTTTCGATGG 1611221
Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416
||||||| ||| ||||||||||||||| | |||||||| || | |||| |||| |||||
Sbjct 1611222 ATAGTAGGTAGAGACAGTGGGAATCTC--TCATCCATTCGTGTGAGTCATTAATCAGATG 1611279
Query 417 ACGAGGCA-TTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTG 475
|| ||||| |||||||| |||||||||||||| |||||||||||| ||| | | ||||
Sbjct 1611280 ACAAGGCATTTTGGCTATCTTAAGAGAGTCATGGTTACTCCCGCCACTTAGCAGTGCTTC 1611339
Query 476 GTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533
| ||||||||||| ||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1611340 ATGGAATTTCTTCAGTTTGACATTCAGAGCACTGGGCAGAAATCACATCGCATCAACA 1611397
>seq8852
Length=5767888
Score = 322 bits (356), Expect = 2e-85
Identities = 252/300 (84%), Gaps = 1/300 (0%)
Strand=Plus/Minus
Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296
|||||||||| |||||||||||| || ||||| | | ||||||||||||||||||
Sbjct 1646625 CTCCCACTTACTCTACACCTCTCGTATCTCTTCACTGTGCCAGACTAGAGTCAAGCTCAA 1646566
Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356
||| |||||||||||| | |||||| |||||||| |||||||||||||||||||| || |
Sbjct 1646565 CAGTGTCTTCTTTCCCAGATGATTCTGCCAAGCCTGTTCCCTTGGCTGTGGTTTC-CTGG 1646507
Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416
||||||| |||||||| ||||||||| ||| |||||||||| || ||| |||||| |||
Sbjct 1646506 ATAGTAGGTAGGGACAATGGGAATCTGGTTCATCCATTCATCTGCATCAGTAATTACATG 1646447
Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476
| ||||| |||||||| |||||||||||||| |||||||| || ||||| || |||
Sbjct 1646446 ATGAGGCTTTTGGCTATCTTAAGAGAGTCATCATTACTCCCACCAGTTACCTGCCCTTCA 1646387
Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCA 536
||||||||||| ||| |||||||||| | |||| ||||||||||||| ||||||| ||
Sbjct 1646386 TTGAATTTCTTTACTATGACATTCAGTGGACTGAGCAGAAATCACATCAGGTCAACACCA 1646327
>seq79
Length=3541318
Score = 223 bits (246), Expect = 1e-55
Identities = 173/206 (84%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296
||||||||||||||||| ||||| ||| ||||| | | | ||||||||||||| ||||
Sbjct 2708187 CTCCCACTTATTCTACATGTCTCAGGTCTCTTCACCATGCCAGACTAGAGTCAAGTTCAA 2708128
Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356
||||||| ||||||| |||||||| |||| || ||||||||||||||||||| |||||
Sbjct 2708127 TAGGGTCTCCTTTCCCTGCTGATTCTGCCACACCTGTTCCCTTGGCTGTGGTTTTGCTAG 2708068
Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416
||||||| |||||||| ||||| |||| || |||||||||| |||||||| || ||
Sbjct 2708067 ATAGTAGGTAGGGACAATGGGAGTCTCCTTCATCCATTCATAGATGTCACTAACTATATA 2708008
Query 417 ACGAGGCATTTGGCTACCTTAAGAGA 442
| ||||||| | ||||||||||||||
Sbjct 2708007 ATGAGGCATCTAGCTACCTTAAGAGA 2707982
>seq6162
Length=4966695
Score = 174 bits (192), Expect = 5e-41
Identities = 126/146 (86%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296
|||||||||||||||||||||||| || ||||| | | ||||||| ||| |||||
Sbjct 4937579 CTCCCACTTATTCTACACCTCTCATTTCTCTTCACCATGCTAGACTAGAATCAGTCTCAA 4937520
Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356
|||||| |||| |||| |||||||| ||||||||| ||||||||||||||||||| || |
Sbjct 4937519 CAGGGTTTTCTCTCCCTGCTGATTCAGCCAAGCCCATTCCCTTGGCTGTGGTTTCACTGG 4937460
Query 357 ATAGTAGATAGGGACAGTGGGAATCT 382
||||||| ||||||||||||||||||
Sbjct 4937459 ATAGTAGGTAGGGACAGTGGGAATCT 4937434
Score = 86.0 bits (94), Expect = 2e-14
Identities = 83/107 (78%), Gaps = 0/107 (0%)
Strand=Plus/Minus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
||| || || | |||| ||||||| |||| |||| ||||||||||||||| |||
Sbjct 3286973 CTTCTGTTCCATGGGAGGTTTCTGTCCTCCCTGAGCTTGCCTTAGGACACCTGCATTACT 3286914
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113
|||| |||| ||| | ||||||| || ||||| |||||| || ||||
Sbjct 3286913 GTTTGACAGGTGTACTGCCCCAGTCAGACTCCTCACCTGGCACTGTC 3286867
>seq7980
Length=3121267
Score = 161 bits (178), Expect = 3e-37
Identities = 133/161 (83%), Gaps = 2/161 (1%)
Strand=Plus/Plus
Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296
|||||||||||||||||||||||| ||| || || | | | | ||||||| || |||||
Sbjct 2949616 CTCCCACTTATTCTACACCTCTCATGTCTCTTGACCATGCCAGGCTAGAGTTAAACTCAA 2949675
Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356
|||||||||| ||||| ||||||||| ||||||| |||||||| | |||| | ||| |
Sbjct 2949676 CAGGGTCTTCATTCCCTGCTGATTCCACCAAGCCTATTCCCTTGAC--TGGTATTGCTGG 2949733
Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCAT 397
||||||| |||||| |||| ||| || ||| ||||||||||
Sbjct 2949734 ATAGTAGGTAGGGATAGTGCGAACCTTGTTCATCCATTCAT 2949774
>seq1763
Length=3396493
Score = 152 bits (168), Expect = 2e-34
Identities = 120/143 (84%), Gaps = 3/143 (2%)
Strand=Plus/Minus
Query 356 GATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGAT 415
|| ||||| ||||||| ||||| ||||||| || |||||||||| |||| ||||| |||
Sbjct 1440312 GACAGTAGGTAGGGACCATGGGACTCTCGTTCATTCATTCATGCGTGTCATTAATTGGAT 1440253
Query 416 GACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTG 475
|| |||||||||||||||||||||||||||||| |||||||| |||||||| | ||
Sbjct 1440252 GATGAGGCATTTGGCTACCTTAAGAGAGTCATACTTACTCCCACCGTTTAC---CACTCC 1440196
Query 476 GTTGAATTTCTTCACTTTGACAT 498
||||||||||||||| ||||
Sbjct 1440195 ACTGAATTTCTTCACTTCAACAT 1440173
>seq8353
Length=2157682
Score = 125 bits (138), Expect = 2e-26
Identities = 89/102 (87%), Gaps = 0/102 (0%)
Strand=Plus/Plus
Query 348 TTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACT 407
||| ||| ||||||| | |||||||||||||||||| | |||||| || || | |||||
Sbjct 259965 TTTTGCTGGATAGTAAAAAGGGACAGTGGGAATCTCACTCATCCATACACGCACATCACT 260024
Query 408 AATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAG 449
|||||||||| ||||||||||| |||||||||||||||||||
Sbjct 260025 AATTAGATGATGAGGCATTTGGATACCTTAAGAGAGTCATAG 260066
>seq8079
Length=1648050
Score = 120 bits (132), Expect = 1e-24
Identities = 99/121 (82%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 406 CTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTA 465
|||||||||||| ||||||||||||||||| ||||| | |||||||| | | ||||
Sbjct 470158 CTAATTAGATGATAAGGCATTTGGCTACCTTGAGAGATTGTTAGTTACTTTCATCATTTA 470099
Query 466 CCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTG 525
|| | ||| ||| |||||||||||||||| |||||| |||| ||||||||||| | ||
Sbjct 470098 CCAGAACTTCATTGTATTTCTTCACTTTGACGTTCAGAACACTAGGCAGAAATCATACTG 470039
Query 526 C 526
|
Sbjct 470038 C 470038
>seq14669
Length=386321
Score = 113 bits (124), Expect = 1e-22
Identities = 89/107 (83%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
||| ||||||||||||| | |||||||||| |||| | |||||||| ||||| ||||
Sbjct 173186 CTTCTGCTCTACAGGAGGTCTCTGTTCTCCCTGAGCTCACCTTAGGATACCTGTGTTACC 173245
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113
||| |||| ||| ||||||||| ||||||||||||||| || ||||
Sbjct 173246 ATTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGGCACTGTC 173292
>seq4112
Length=609690
Score = 111 bits (122), Expect = 5e-22
Identities = 75/84 (89%), Gaps = 0/84 (0%)
Strand=Plus/Plus
Query 259 CAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGA 318
|| ||| ||||| | |||||||||||||||||||||||||||||||||||| |||||
Sbjct 563194 CATGTCTCTTCACCGTGCCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCTGCTGA 563253
Query 319 TTCCGCCAAGCCCGTTCCCTTGGC 342
||||||||| ||||||||||||||
Sbjct 563254 TTCCGCCAAACCCGTTCCCTTGGC 563277
>seq711
Length=9888423
Score = 102 bits (112), Expect = 3e-19
Identities = 116/152 (76%), Gaps = 3/152 (2%)
Strand=Plus/Plus
Query 372 AGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCT 431
|||| |||||| | | || |||||| | ||| || |||||||||||| || || ||||
Sbjct 4268801 AGTGAGAATCTTGGTCATGAATTCATACATGTCTCTGATTAGATGACGAAGCGTT-GGCT 4268859
Query 432 ACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACT 491
||||||||||| ||||||||||| ||| |||| ||| |||||||||||||||
Sbjct 4268860 ACCTTAAGAGATTCATAGTTACT-GTGCCATTTA-TTTAACTTCATTGAATTTCTTCACT 4268917
Query 492 TTGACATTCAGAGCACTGGGCAGAAATCACAT 523
||||||| | | ||||||| ||| || ||
Sbjct 4268918 GTGACATTGAATGTGCTGGGCAAAAACCATAT 4268949
>seq10211
Length=3712714
Score = 95.1 bits (104), Expect = 4e-17
Identities = 117/159 (74%), Gaps = 1/159 (1%)
Strand=Plus/Plus
Query 285 AGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTG 344
||||| | |||| | ||| || | || | |||| ||||| || ||| ||||||||
Sbjct 1975204 AGTCAGGTTCAATGGAGTCCTCGTCATCCACAGATTTTGCCAAACCA-TTCTCTTGGCTG 1975262
Query 345 TGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTC 404
| ||||| ||| | ||| | || ||| ||||| || || ||||||||||| |||
Sbjct 1975263 TAGTTTCATCAGAAAATAGGTGAAGAGAGTAGGAATATCATTCTTCCATTCATGCATGTC 1975322
Query 405 ACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAG 443
||||||||||| |||| |||| || ||||||||||||
Sbjct 1975323 TCTAATTAGATGCTGAGGAATTTAGCCACCTTAAGAGAG 1975361
>seq6713
Length=4903966
Score = 91.5 bits (100), Expect = 5e-16
Identities = 74/87 (85%), Gaps = 2/87 (2%)
Strand=Plus/Plus
Query 374 TGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTAC 433
|||||| ||| || ||||||||||| || |||||||| |||||| ||| |||||| |||
Sbjct 4067311 TGGGAAGCTC-TTCATCCATTCATGTGCA-CACTAATTGGATGACCAGGAATTTGGGTAC 4067368
Query 434 CTTAAGAGAGTCATAGTTACTCCCGCC 460
||||| ||||||||||||| ||| |||
Sbjct 4067369 CTTAAAAGAGTCATAGTTATTCCTGCC 4067395
>seq2548
Length=1674112
Score = 89.7 bits (98), Expect = 2e-15
Identities = 75/92 (82%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 306 CTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT 365
|||||||| |||||||| |||||| ||||||||||||||| ||| ||| ||||| |
Sbjct 818907 CTTTCCCCACTGATTCCACCAAGCTTGTTCCCTTGGCTGTGATTTTGCTGTGTAGTAAGT 818966
Query 366 AGGGACAGTGGGAATCTCGTTAATCCATTCAT 397
||||||||| | ||||| || |||||| |||
Sbjct 818967 AGGGACAGTAAGGATCTCATTCATCCATACAT 818998
>seq7584
Length=794560
Score = 87.8 bits (96), Expect = 6e-15
Identities = 82/103 (80%), Gaps = 1/103 (1%)
Strand=Plus/Minus
Query 11 TGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGTTT 70
|||| || |||| ||||||| ||| |||| | ||||||||||||||||||| |||
Sbjct 198851 TGCTTCACGGGAGGTTTCTGTCTTCCCTGAGCTCGCCTTAGGACACCTGCGTTA-CCTTT 198793
Query 71 AACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113
|||| | | || |||||| ||||||||||||||| || ||||
Sbjct 198792 GACAGGTATACCACCCCAGTCAAACTCCCCACCTGGCACTGTC 198750
>seq13435
Length=492982
Score = 86.0 bits (94), Expect = 2e-14
Identities = 83/106 (78%), Gaps = 2/106 (2%)
Strand=Plus/Plus
Query 8 TTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGG 67
|| ||| | ||||||| ||||||| |||| | || | ||| || ||||||| |||
Sbjct 10162 TTCTGCCCCACAGGAGGTTTCTGTCCTCCCTAAGCTCGCCTCAGAACACCTG--TTACCA 10219
Query 68 TTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113
||| |||| ||| ||||||||| ||||||||||||||| || ||||
Sbjct 10220 TTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGGCATTGTC 10265
>seq10357
Length=2830096
Score = 77.0 bits (84), Expect = 1e-11
Identities = 74/95 (78%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
||| ||||| | |||| ||||||| ||| |||| | ||| |||||||| | ||||
Sbjct 677513 CTTCTGCTCCATGGGAGGTTTCTGTCCTCTCTGAGCTCGCCTGAGGACACCCGTGTTACA 677572
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCA 101
|||| |||| ||| || |||||| |||||||||||
Sbjct 677573 GTTTGACAGGTGTACCACCCCAGTCAAACTCCCCA 677607
>seq11968
Length=3642
Score = 75.2 bits (82), Expect = 4e-11
Identities = 80/106 (75%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 369 GACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTG 428
||||||||| | |||||| |||||| ||| ||| | ||| ||| ||| ||||
Sbjct 3200 GACAGTGGGGAAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTC 3141
Query 429 GCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 474
||||||||| || || |||||||| |||||||||||| | ||||
Sbjct 3140 GCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACCGGGGCTT 3095
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1634953755232
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |