Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= AAMG01002223.1
Length=366
Score E
Sequences producing significant alignments: (Bits) Value
seq9910 219 9e-55
seq13554 183 6e-44
seq6860 165 2e-38
>seq9910
Length=308115
Score = 219 bits (242), Expect = 9e-55
Identities = 221/285 (78%), Gaps = 7/285 (2%)
Strand=Plus/Plus
Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACG- 59
||||||||||||| ||||||||| ||||||||| || ||||| || | ||| |
Sbjct 260823 GGCTGCTGGCACGTAGTTAGCCGGTGCTTATTCTTACGGTACCGTCATGGGCCCCCTGTA 260882
Query 60 -TGGAAGG----TTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCT 114
| ||||| |||| | || || ||||| ||||||||| ||| || ||||||||||
Sbjct 260883 TTAGAAGGAGCTTTTTCGTTCCGTACAAAAGCAGTTTACAACCCGAAGG-CCTTCATCCT 260941
Query 115 TCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTC 174
||||| | | ||||| |||| || ||| |||||| |||| ||||| ||||||||||||
Sbjct 260942 GCACGCGGCATTGCTGGATCAGGCTTTCGCCCATTGTCCAAAATTCCCCACTGCTGCCTC 261001
Query 175 CCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCT 234
|||||||||| |||||||||||||||||||| ||||| | | |||||||||| | ||
Sbjct 261002 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCGTCCTCTCAGACCAGCT 261061
Query 235 ATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279
| ||||| | ||||||| || ||||| | ||||||| |||||
Sbjct 261062 ACTGATCGTCGCCTAGGTGAGCTTTTACCTCACCTACTAGCTAAT 261106
>seq13554
Length=1007
Score = 183 bits (202), Expect = 6e-44
Identities = 181/232 (78%), Gaps = 3/232 (1%)
Strand=Plus/Plus
Query 82 AAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCT 141
||||| ||||||| || || |||||||| |||||| | ||||||| |||| ||
Sbjct 63 AAAGAGCTTTACAACCCTAAGG-CCTTCATCACTCACGCGGCATGGCTGGATCAGGCTTG 121
Query 142 CGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGT 201
|| |||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 122 CGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGT 181
Query 202 TCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTA 261
|||| |||| || | |||||||||| | || ||||| | || |||| ||| |||
Sbjct 182 TCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTA 241
Query 262 CCCCGCCTACTACCTAATGGAACGCATCCCCATCGTACACCGATGAATCTTT 313
|||| || |||| ||||| ||||| || ||| | | ||||| |||||||
Sbjct 242 CCCCACCAACTAGCTAAT--AACGCGGGCCAATCCTTCCCCGATAAATCTTT 291
>seq6860
Length=6169
Score = 165 bits (182), Expect = 2e-38
Identities = 204/280 (73%), Gaps = 22/280 (8%)
Strand=Plus/Minus
Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60
||||||||||||| ||||||||| |||||||| | ||||| ||
Sbjct 1437 GGCTGCTGGCACGAAGTTAGCCGGGGCTTATTCTTGCGGTACCGTCA------------- 1391
Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120
|| | ||||| | |||||| ||||||| || ||| |||||||| ||||||
Sbjct 1390 ------TTATCTTCCCGCACAAAAGAGCTTTACAACCC-TAGGGCCTTCATCACTCACGC 1338
Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180
| ||||||| |||| | | |||||| |||||||||| ||||||||||||||||||
Sbjct 1337 GGCATGGCTGGATCAGGGTTGCCCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAG 1278
Query 181 GAGTTTGGACCGTGTCTCAGTTCCAA-TGTGGGGGACCTTCCTCTCAGAACCCCTATCCA 239
|||||||| ||||||| |||| |||| ||||| || | |||||||||| | ||| |
Sbjct 1277 GAGTTTGGGCCGTGTC-CAGTCCCAATTGTGGCTGATCATCCTCTCAGACCAGCTACTGA 1219
Query 240 TCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279
|||| | || |||| ||| ||||| | || |||| |||||
Sbjct 1218 TCGTCGCCTTGGTGAGCCTTTACCTCACCAACTAGCTAAT 1179
Score = 131 bits (144), Expect = 4e-28
Identities = 126/162 (78%), Gaps = 0/162 (0%)
Strand=Plus/Minus
Query 152 CCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGG 211
|||||||||| |||||||||||||||||||||| ||| |||||||||||| ||| |||||
Sbjct 907 CCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGG 848
Query 212 GGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTAC 271
|| | |||||||||| | ||| ||||| | || |||| ||| ||||| | || ||
Sbjct 847 CTGATCATCCTCTCAGACCAGCTACTGATCGTCGCCTTGGTGAGCCATTACCTCACCAAC 788
Query 272 TACCTAATGGAACGCATCCCCATCGTACACCGATGAATCTTT 313
|| ||||| |||| || ||| | | |||| |||||||
Sbjct 787 TAGCTAATCAGACGCGGGCCGATCTTTCGGCGATAAATCTTT 746
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1068639049408
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |