Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq9910 219 9e-55 seq13554 183 6e-44 seq6860 165 2e-38 >seq9910 Length=308115 Score = 219 bits (242), Expect = 9e-55 Identities = 221/285 (78%), Gaps = 7/285 (2%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACG- 59 ||||||||||||| ||||||||| ||||||||| || ||||| || | ||| | Sbjct 260823 GGCTGCTGGCACGTAGTTAGCCGGTGCTTATTCTTACGGTACCGTCATGGGCCCCCTGTA 260882 Query 60 -TGGAAGG----TTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCT 114 | ||||| |||| | || || ||||| ||||||||| ||| || |||||||||| Sbjct 260883 TTAGAAGGAGCTTTTTCGTTCCGTACAAAAGCAGTTTACAACCCGAAGG-CCTTCATCCT 260941 Query 115 TCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTC 174 ||||| | | ||||| |||| || ||| |||||| |||| ||||| |||||||||||| Sbjct 260942 GCACGCGGCATTGCTGGATCAGGCTTTCGCCCATTGTCCAAAATTCCCCACTGCTGCCTC 261001 Query 175 CCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCT 234 |||||||||| |||||||||||||||||||| ||||| | | |||||||||| | || Sbjct 261002 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCGTCCTCTCAGACCAGCT 261061 Query 235 ATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 | ||||| | ||||||| || ||||| | ||||||| ||||| Sbjct 261062 ACTGATCGTCGCCTAGGTGAGCTTTTACCTCACCTACTAGCTAAT 261106 >seq13554 Length=1007 Score = 183 bits (202), Expect = 6e-44 Identities = 181/232 (78%), Gaps = 3/232 (1%) Strand=Plus/Plus Query 82 AAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCT 141 ||||| ||||||| || || |||||||| |||||| | ||||||| |||| || Sbjct 63 AAAGAGCTTTACAACCCTAAGG-CCTTCATCACTCACGCGGCATGGCTGGATCAGGCTTG 121 Query 142 CGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGT 201 || |||||| |||||||||| |||||||||||||||||||||| |||||||||||||||| Sbjct 122 CGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGT 181 Query 202 TCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTA 261 |||| |||| || | |||||||||| | || ||||| | || |||| ||| ||| Sbjct 182 TCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTA 241 Query 262 CCCCGCCTACTACCTAATGGAACGCATCCCCATCGTACACCGATGAATCTTT 313 |||| || |||| ||||| ||||| || ||| | | ||||| ||||||| Sbjct 242 CCCCACCAACTAGCTAAT--AACGCGGGCCAATCCTTCCCCGATAAATCTTT 291 >seq6860 Length=6169 Score = 165 bits (182), Expect = 2e-38 Identities = 204/280 (73%), Gaps = 22/280 (8%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 ||||||||||||| ||||||||| |||||||| | ||||| || Sbjct 1437 GGCTGCTGGCACGAAGTTAGCCGGGGCTTATTCTTGCGGTACCGTCA------------- 1391 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 || | ||||| | |||||| ||||||| || ||| |||||||| |||||| Sbjct 1390 ------TTATCTTCCCGCACAAAAGAGCTTTACAACCC-TAGGGCCTTCATCACTCACGC 1338 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | ||||||| |||| | | |||||| |||||||||| |||||||||||||||||| Sbjct 1337 GGCATGGCTGGATCAGGGTTGCCCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAG 1278 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAA-TGTGGGGGACCTTCCTCTCAGAACCCCTATCCA 239 |||||||| ||||||| |||| |||| ||||| || | |||||||||| | ||| | Sbjct 1277 GAGTTTGGGCCGTGTC-CAGTCCCAATTGTGGCTGATCATCCTCTCAGACCAGCTACTGA 1219 Query 240 TCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 |||| | || |||| ||| ||||| | || |||| ||||| Sbjct 1218 TCGTCGCCTTGGTGAGCCTTTACCTCACCAACTAGCTAAT 1179 Score = 131 bits (144), Expect = 4e-28 Identities = 126/162 (78%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 152 CCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGG 211 |||||||||| |||||||||||||||||||||| ||| |||||||||||| ||| ||||| Sbjct 907 CCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGG 848 Query 212 GGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTAC 271 || | |||||||||| | ||| ||||| | || |||| ||| ||||| | || || Sbjct 847 CTGATCATCCTCTCAGACCAGCTACTGATCGTCGCCTTGGTGAGCCATTACCTCACCAAC 788 Query 272 TACCTAATGGAACGCATCCCCATCGTACACCGATGAATCTTT 313 || ||||| |||| || ||| | | |||| ||||||| Sbjct 787 TAGCTAATCAGACGCGGGCCGATCTTTCGGCGATAAATCTTT 746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068639049408