Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq6459 84.2 4e-14 seq1026 82.4 1e-13 seq13865 80.6 4e-13 seq6162 77.0 5e-12 seq4298 75.2 2e-11 >seq6459 Length=5086755 Score = 84.2 bits (92), Expect = 4e-14 Identities = 73/91 (80%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 31 TTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGG 90 ||||| |||| | || |||| || || || || ||||||| ||||| |||||||| Sbjct 2125648 TTGGTGTTTGTGCTTGGCTGAGGAGCCAATGGGGCAAAGCTACTATCTGTGGGATTATGA 2125589 Query 91 CTGAACGCCTCTAAGTCAGAATCCATGCCAG 121 ||||||||||||||||||||||||| |||| Sbjct 2125588 CTGAACGCCTCTAAGTCAGAATCCAGCCCAG 2125558 >seq1026 Length=3959167 Score = 82.4 bits (90), Expect = 1e-13 Identities = 78/96 (81%), Gaps = 4/96 (4%) Strand=Plus/Minus Query 21 TTCAGA-ATAATTGGTTTT-TGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCT 78 |||||| ||| |||| || || | || |||| || || || ||||||||||||||| Sbjct 3681211 TTCAGACATA--TGGTGTTATGTGCTTGGCTGAGGAGCCAATGGGGCGAAGCTACCATCT 3681154 Query 79 GCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||| |||||||||||||||||||||||| Sbjct 3681153 GAGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 3681118 >seq13865 Length=4366963 Score = 80.6 bits (88), Expect = 4e-13 Identities = 89/115 (77%), Gaps = 4/115 (3%) Strand=Plus/Plus Query 1 GTACGAGAGGAACC-GCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAG 59 |||| ||||||||| | || ||||| | ||||| | | | || |||| || || Sbjct 2209658 GTACAAGAGGAACCAGAGG--TTCAGGC-ATTTGGTGTATATGCTTGGCTGAGAAGCCAA 2209714 Query 60 TGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 || |||||||||||||||| |||||||| || ||||||||||||||||||||| Sbjct 2209715 TGGGGCGAAGCTACCATCTGTGGGATTATGACTAAACGCCTCTAAGTCAGAATCC 2209769 >seq6162 Length=4966695 Score = 77.0 bits (84), Expect = 5e-12 Identities = 87/114 (76%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||| ||||||||| |||| |||||| | | ||| | || | || |||| || || | Sbjct 4938190 GTAGGAGAGGAACTGCGGG-TTCAGAC-ATTCGGTGTATGTGCTTGGCTGAGGAGTCAAT 4938247 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | | ||||||||||||| |||||||| ||||| ||||| |||||||||||| Sbjct 4938248 GGGTCAAAGCTACCATCTGTGGGATTATGACTGAATGCCTCCAAGTCAGAATCC 4938301 >seq4298 Length=981681 Score = 75.2 bits (82), Expect = 2e-11 Identities = 86/113 (76%), Gaps = 2/113 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||| ||||||||||| | |||| | | ||||| | | | || |||| || || | Sbjct 27282 GTACAAGAGGAACCGCAGG-TTCACAC-ATTTGGTGTACGTGCTTGGCTGAGGAGCCAAT 27339 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 | |||||||||||||||| ||||||| |||| ||||||||||||||||| Sbjct 27340 GGGGCGAAGCTACCATCTGTGAGATTATGAATGAATGCCTCTAAGTCAGAATC 27392 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819080491776