Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= AAMG01002236.1
Length=287
Score E
Sequences producing significant alignments: (Bits) Value
seq6459 84.2 4e-14
seq1026 82.4 1e-13
seq13865 80.6 4e-13
seq6162 77.0 5e-12
seq4298 75.2 2e-11
>seq6459
Length=5086755
Score = 84.2 bits (92), Expect = 4e-14
Identities = 73/91 (80%), Gaps = 0/91 (0%)
Strand=Plus/Minus
Query 31 TTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGG 90
||||| |||| | || |||| || || || || ||||||| ||||| ||||||||
Sbjct 2125648 TTGGTGTTTGTGCTTGGCTGAGGAGCCAATGGGGCAAAGCTACTATCTGTGGGATTATGA 2125589
Query 91 CTGAACGCCTCTAAGTCAGAATCCATGCCAG 121
||||||||||||||||||||||||| ||||
Sbjct 2125588 CTGAACGCCTCTAAGTCAGAATCCAGCCCAG 2125558
>seq1026
Length=3959167
Score = 82.4 bits (90), Expect = 1e-13
Identities = 78/96 (81%), Gaps = 4/96 (4%)
Strand=Plus/Minus
Query 21 TTCAGA-ATAATTGGTTTT-TGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCT 78
|||||| ||| |||| || || | || |||| || || || |||||||||||||||
Sbjct 3681211 TTCAGACATA--TGGTGTTATGTGCTTGGCTGAGGAGCCAATGGGGCGAAGCTACCATCT 3681154
Query 79 GCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114
| |||||||| ||||||||||||||||||||||||
Sbjct 3681153 GAGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 3681118
>seq13865
Length=4366963
Score = 80.6 bits (88), Expect = 4e-13
Identities = 89/115 (77%), Gaps = 4/115 (3%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACC-GCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAG 59
|||| ||||||||| | || ||||| | ||||| | | | || |||| || ||
Sbjct 2209658 GTACAAGAGGAACCAGAGG--TTCAGGC-ATTTGGTGTATATGCTTGGCTGAGAAGCCAA 2209714
Query 60 TGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114
|| |||||||||||||||| |||||||| || |||||||||||||||||||||
Sbjct 2209715 TGGGGCGAAGCTACCATCTGTGGGATTATGACTAAACGCCTCTAAGTCAGAATCC 2209769
>seq6162
Length=4966695
Score = 77.0 bits (84), Expect = 5e-12
Identities = 87/114 (76%), Gaps = 2/114 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||| ||||||||| |||| |||||| | | ||| | || | || |||| || || |
Sbjct 4938190 GTAGGAGAGGAACTGCGGG-TTCAGAC-ATTCGGTGTATGTGCTTGGCTGAGGAGTCAAT 4938247
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114
| | ||||||||||||| |||||||| ||||| ||||| ||||||||||||
Sbjct 4938248 GGGTCAAAGCTACCATCTGTGGGATTATGACTGAATGCCTCCAAGTCAGAATCC 4938301
>seq4298
Length=981681
Score = 75.2 bits (82), Expect = 2e-11
Identities = 86/113 (76%), Gaps = 2/113 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||| ||||||||||| | |||| | | ||||| | | | || |||| || || |
Sbjct 27282 GTACAAGAGGAACCGCAGG-TTCACAC-ATTTGGTGTACGTGCTTGGCTGAGGAGCCAAT 27339
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113
| |||||||||||||||| ||||||| |||| |||||||||||||||||
Sbjct 27340 GGGGCGAAGCTACCATCTGTGAGATTATGAATGAATGCCTCTAAGTCAGAATC 27392
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 819080491776
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |