Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq711 197 4e-48
seq14139 129 2e-27
seq10486 120 9e-25
seq7463 118 3e-24
seq1834 111 5e-22
seq7430 107 6e-21
seq6668 107 6e-21
seq5839 100 9e-19
seq9761 95.1 4e-17
seq5317 95.1 4e-17
seq6184 87.8 5e-15
seq9216 82.4 2e-13
seq8341 82.4 2e-13
seq9886 80.6 8e-13
seq6341 78.8 3e-12
seq13301 75.2 3e-11
seq8776 75.2 3e-11
seq8428 75.2 3e-11
>seq711
Length=9888423
Score = 197 bits (218), Expect = 4e-48
Identities = 180/221 (81%), Gaps = 6/221 (3%)
Strand=Plus/Minus
Query 8 TTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCCGT 66
||||||| ||| | | | ||||| ||||||| ||||| | |||| ||||||||
Sbjct 8650435 TTCCAATGACAGGGTCTCGAAAGAATCCTGTATTGTTATTTTTCATCACGACCTCCCCCC 8650376
Query 67 GTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAG 126
|||||| |||||||||||| | |||||||||||||||||||||||||||| ||||||||
Sbjct 8650375 -TCGGGAGTGGGTAATTTGCACACCTGCTGCCTTCCTTGGATGTGGTAGCCATTTCTCAG 8650317
Query 127 GCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGG-CCA 185
|||||||||| ||||||||||||| ||||||| | |||| | | |||| | |||| ||
Sbjct 8650316 GCTCCCTCTCTGGAATCGAACCCTGATTCCCCATCACCCATGGTGACCAAGATAGGTACA 8650257
Query 186 CT-ATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAAT 225
| || |||||||| ||||||||| |||||| ||||||||
Sbjct 8650256 GTGAT--TACCATCGCAAGTTGATAAGGCAGACATTTGAAT 8650218
>seq14139
Length=1290112
Score = 129 bits (142), Expect = 2e-27
Identities = 96/110 (87%), Gaps = 2/110 (2%)
Strand=Plus/Minus
Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATA 454
|||| ||| ||||||||||||||||||||||||||||||||||||| | | ||
Sbjct 716218 CAAAGGAACCATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTACGGGCCGTGCGTA 716159
Query 455 CTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
|||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 716158 CTTAGACATGCATGGC-TAATCTTTGAGACAAGCATATG-CTACTGGCAG 716111
>seq10486
Length=4687453
Score = 120 bits (132), Expect = 9e-25
Identities = 122/152 (80%), Gaps = 8/152 (5%)
Strand=Plus/Minus
Query 356 TCTAGAATTACCACGGTTATCCATGTAGTAAGGT-ACT-ATCAAATAAACGATAACTGAT 413
||||||||||||| |||||||| | || | || | | | |||| ||| |||||||||
Sbjct 992343 TCTAGAATTACCA--GTTATCCAAGAAGAAGAGTGAGTGACCAAAGGAACCATAACTGAT 992286
Query 414 TTAATGAGCCATTCGCAGTTTCACTGTAT-AGATTGCTTATACTTAGACATGCATGGCTT 472
||||||||| || | ||||||||||||| || || | | ||||||||||||| | ||
Sbjct 992285 TTAATGAGCAATCCACAGTTTCACTGTACCAGCTTACGCA--CTTAGACATGCATAGTTT 992228
Query 473 AATCTTTGAGACAAGCATATGACTACTGGCAG 504
|||||||||||||||||| || || |||||||
Sbjct 992227 AATCTTTGAGACAAGCATGTG-CTGCTGGCAG 992197
>seq7463
Length=1940000
Score = 118 bits (130), Expect = 3e-24
Identities = 89/104 (86%), Gaps = 3/104 (3%)
Strand=Plus/Minus
Query 34 CTGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTG 93
|||||| ||||| ||||||||||||||| | ||| ||| | ||||||||| |||||
Sbjct 1807075 CTGTAT---TATTTTTTGTCACTACCTCCCTGGGTCAGGAGAGAGTAATTTGCCTGCCTG 1807019
Query 94 CTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCC 137
|||||||||||| | ||||||||| |||||||||||||||||||
Sbjct 1807018 CTGCCTTCCTTGAAGGTGGTAGCCATTTCTCAGGCTCCCTCTCC 1806975
>seq1834
Length=4449226
Score = 111 bits (122), Expect = 5e-22
Identities = 64/66 (97%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 75 TGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTC 134
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1035938 TGGGTAATTTGTGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTC 1035879
Query 135 TCCGGA 140
||| ||
Sbjct 1035878 TCCAGA 1035873
>seq7430
Length=5980257
Score = 107 bits (118), Expect = 6e-21
Identities = 93/112 (83%), Gaps = 5/112 (4%)
Strand=Plus/Minus
Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAG--ATTGCTTA 452
||||| | | ||||||||||||||||| || | ||| ||||||||| | | ||| |
Sbjct 5830242 CAAATGAGCCATAACTGATTTAATGAGTTATCCACAGATTCACTGTACTGGGAGTGC--A 5830185
Query 453 TACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
|||||||| ||| ||||||||||||||||||||||||| || ||||||||||
Sbjct 5830184 TACTTAGATATGTATGGCTTAATCTTTGAGACAAGCATGTG-CTACTGGCAG 5830134
>seq6668
Length=3322862
Score = 107 bits (118), Expect = 6e-21
Identities = 94/114 (82%), Gaps = 5/114 (4%)
Strand=Plus/Plus
Query 393 ATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGAT--TGCT 450
|||||| | | ||| |||||||||||||| ||| |||||||||||| | || | |||
Sbjct 665224 ATCAAAGGAGCCATACCTGATTTAATGAGCTATTTGCAGTTTCACTGCACAGTTCATGC- 665282
Query 451 TATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
|||||||| ||| |||||||||| | ||||||||||||||| ||||||||||
Sbjct 665283 -GTACTTAGATATGGATGGCTTAATATGTGAGACAAGCATATG-CTACTGGCAG 665334
>seq5839
Length=677508
Score = 100 bits (110), Expect = 9e-19
Identities = 90/113 (80%), Gaps = 15/113 (13%)
Strand=Plus/Plus
Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCA---CTGTATAGATTGCTT 451
|||| ||| ||||||||||||||||||||| | |||| || ||| |
Sbjct 508943 CAAAGGAACCATAACTGATTTAATGAGCCATCCACAGTACCAGCCCTG-----------T 508991
Query 452 ATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 508992 GTACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 509043
>seq9761
Length=591845
Score = 95.1 bits (104), Expect = 4e-17
Identities = 88/110 (80%), Gaps = 5/110 (5%)
Strand=Plus/Minus
Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATA 454
|||| |||| |||| ||||||||||||| || ||||||||| |||| | | |||
Sbjct 447314 CAAAGAAACCATAATTGATTTAATGAGCTGTTTGCAGTTTCATTGTACTGGCCACACATA 447255
Query 455 CTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 447254 CTTT----TGCATGGCTTAATCTTTGAGACAAGCATATG-TTACTGGCAG 447210
>seq5317
Length=6866741
Score = 95.1 bits (104), Expect = 4e-17
Identities = 75/89 (84%), Gaps = 1/89 (1%)
Strand=Plus/Minus
Query 405 ATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATG 464
||||||| || ||||||| ||| |||||||||||||| | ||| | |||||||||
Sbjct 2739592 ATAACTGCTTGAATGAGCTATTTGCAGTTTCACTGTACTGGTTGTGCGTT-TTAGACATG 2739534
Query 465 CATGGCTTAATCTTTGAGACAAGCATATG 493
||||||||||||||||||| |||||||||
Sbjct 2739533 CATGGCTTAATCTTTGAGATAAGCATATG 2739505
>seq6184
Length=4117727
Score = 87.8 bits (96), Expect = 5e-15
Identities = 105/142 (74%), Gaps = 8/142 (6%)
Strand=Plus/Plus
Query 90 CCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCC 149
|||||||||||||||| |||||| |||| || ||||||||||||||| || || |||||
Sbjct 2709208 CCTGCTGCCTTCCTTGAATGTGGGAGCCATTAATCAGGCTCCCTCTCCTGACTCAAACCC 2709267
Query 150 TAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATA 209
| ||||||| | || | ||| |||| | | |||||||| || | ||||
Sbjct 2709268 TGATTCCCCATCAC----TCATAAGTAGGTATGAGA----ACTACCATCAAAGGCTGATT 2709319
Query 210 GGGCAGAAATTTGAATGAACCA 231
|||| | | ||||||||| ||
Sbjct 2709320 AGGCAAACACTTGAATGAATCA 2709341
>seq9216
Length=6899875
Score = 82.4 bits (90), Expect = 2e-13
Identities = 79/100 (79%), Gaps = 1/100 (1%)
Strand=Plus/Plus
Query 405 ATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATG 464
|||||||||||||| ||| ||| |||||||| |||| | | |||||||||||
Sbjct 2611200 ATAACTGATTTAATTAGCTGTTCACAGTTTCAGTGTACTGGCCATATGTACTTAGACATT 2611259
Query 465 CATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
||| |||||||||||||||||| ||||| |||||| ||
Sbjct 2611260 CATAGCTTAATCTTTGAGACAAATATATG-TTACTGGTAG 2611298
>seq8341
Length=6108915
Score = 82.4 bits (90), Expect = 2e-13
Identities = 87/111 (78%), Gaps = 9/111 (8%)
Strand=Plus/Minus
Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTA-TAGATTGCTTAT 453
|||| ||| |||||||||| |||||| | |||||||||||||| || ||
Sbjct 29969 CAAAGGAACTGTAACTGATTTGATGAGCTAAATGCAGTTTCACTGTACCAG---GC---- 29917
Query 454 ACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
| | |||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 29916 AGGCATACATGCATGGCTTAATCTTTGAGACAAGCATA-GGCTACTGGCAG 29867
>seq9886
Length=2633639
Score = 80.6 bits (88), Expect = 8e-13
Identities = 79/100 (79%), Gaps = 3/100 (3%)
Strand=Plus/Plus
Query 405 ATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATG 464
||| |||||| ||||||| ||| || |||||||| | || | ||| || ||||
Sbjct 2301500 ATAGCTGATTCAATGAGCTATTAGCTGTTTCACTACTGGCAGTG--TGTACCTACACATA 2301557
Query 465 CATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
| ||||||||||| ||||||||||||||| ||||||||||
Sbjct 2301558 CCTGGCTTAATCTCTGAGACAAGCATATG-CTACTGGCAG 2301596
>seq6341
Length=883307
Score = 78.8 bits (86), Expect = 3e-12
Identities = 86/113 (76%), Gaps = 1/113 (1%)
Strand=Plus/Minus
Query 5 TCATTCCAATTACAAGACCCA-AAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCC 63
||| ||||| |||| | || |||||| | | ||| ||||| ||||||||||||
Sbjct 570409 TCAATCCAACTACAGGGCCTTGAAAGAGTCTTATATTGTTATTTTCCATCACTACCTCCC 570350
Query 64 CGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGC 116
| ||| || ||||||||||| | | ||||| |||||||||||||||||||
Sbjct 570349 CTGGTCAAGAGTGGGTAATTTGTACTCTTGCTGTCTTCCTTGGATGTGGTAGC 570297
>seq13301
Length=3398151
Score = 75.2 bits (82), Expect = 3e-11
Identities = 58/69 (84%), Gaps = 0/69 (0%)
Strand=Plus/Plus
Query 425 TTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGAC 484
||| ||||||||||||| | | |||||||||| ||||||||||||||||||||||
Sbjct 21167 TTCCCAGTTTCACTGTACTGGCCGTGCATACTTAGACGTGCATGGCTTAATCTTTGAGAC 21226
Query 485 AAGCATATG 493
||||| |||
Sbjct 21227 AAGCACATG 21235
>seq8776
Length=1066516
Score = 75.2 bits (82), Expect = 3e-11
Identities = 76/96 (79%), Gaps = 6/96 (6%)
Strand=Plus/Minus
Query 409 CTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATG 468
|||| ||||||||| || ||||||||| |||| ||| |||| || |||||||
Sbjct 101121 CTGACTTAATGAGCTATCTGCAGTTTCATTGTAC----TGCC-ATACATACTTATGCATG 101067
Query 469 GCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
|||||||||||||| |||||||||| | |||||||
Sbjct 101066 GCTTAATCTTTGAGGCAAGCATATG-TTGCTGGCAG 101032
>seq8428
Length=3043144
Score = 75.2 bits (82), Expect = 3e-11
Identities = 79/99 (80%), Gaps = 5/99 (5%)
Strand=Plus/Minus
Query 405 ATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTAT-AGAT-TGCTTATACTTAGACA 462
|||| ||||||||| ||| || ||||| ||||| | || | ||| || | |||||
Sbjct 89483 ATAAATGATTTAATAAGCTATCTACAGTTACACTGCACCAGCTGTGCACATCC--AGACA 89426
Query 463 TGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGG 501
||||| |||||||||||||||||||||||| | ||||||
Sbjct 89425 TGCATAGCTTAATCTTTGAGACAAGCATAT-ATTACTGG 89388
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1510172548864
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |