Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq711 197 4e-48 seq14139 129 2e-27 seq10486 120 9e-25 seq7463 118 3e-24 seq1834 111 5e-22 seq7430 107 6e-21 seq6668 107 6e-21 seq5839 100 9e-19 seq9761 95.1 4e-17 seq5317 95.1 4e-17 seq6184 87.8 5e-15 seq9216 82.4 2e-13 seq8341 82.4 2e-13 seq9886 80.6 8e-13 seq6341 78.8 3e-12 seq13301 75.2 3e-11 seq8776 75.2 3e-11 seq8428 75.2 3e-11 >seq711 Length=9888423 Score = 197 bits (218), Expect = 4e-48 Identities = 180/221 (81%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 8 TTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCCGT 66 ||||||| ||| | | | ||||| ||||||| ||||| | |||| |||||||| Sbjct 8650435 TTCCAATGACAGGGTCTCGAAAGAATCCTGTATTGTTATTTTTCATCACGACCTCCCCCC 8650376 Query 67 GTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAG 126 |||||| |||||||||||| | |||||||||||||||||||||||||||| |||||||| Sbjct 8650375 -TCGGGAGTGGGTAATTTGCACACCTGCTGCCTTCCTTGGATGTGGTAGCCATTTCTCAG 8650317 Query 127 GCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGG-CCA 185 |||||||||| ||||||||||||| ||||||| | |||| | | |||| | |||| || Sbjct 8650316 GCTCCCTCTCTGGAATCGAACCCTGATTCCCCATCACCCATGGTGACCAAGATAGGTACA 8650257 Query 186 CT-ATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAAT 225 | || |||||||| ||||||||| |||||| |||||||| Sbjct 8650256 GTGAT--TACCATCGCAAGTTGATAAGGCAGACATTTGAAT 8650218 >seq14139 Length=1290112 Score = 129 bits (142), Expect = 2e-27 Identities = 96/110 (87%), Gaps = 2/110 (2%) Strand=Plus/Minus Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATA 454 |||| ||| ||||||||||||||||||||||||||||||||||||| | | || Sbjct 716218 CAAAGGAACCATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTACGGGCCGTGCGTA 716159 Query 455 CTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||| |||||||||||||||||||||| |||||||||| Sbjct 716158 CTTAGACATGCATGGC-TAATCTTTGAGACAAGCATATG-CTACTGGCAG 716111 >seq10486 Length=4687453 Score = 120 bits (132), Expect = 9e-25 Identities = 122/152 (80%), Gaps = 8/152 (5%) Strand=Plus/Minus Query 356 TCTAGAATTACCACGGTTATCCATGTAGTAAGGT-ACT-ATCAAATAAACGATAACTGAT 413 ||||||||||||| |||||||| | || | || | | | |||| ||| ||||||||| Sbjct 992343 TCTAGAATTACCA--GTTATCCAAGAAGAAGAGTGAGTGACCAAAGGAACCATAACTGAT 992286 Query 414 TTAATGAGCCATTCGCAGTTTCACTGTAT-AGATTGCTTATACTTAGACATGCATGGCTT 472 ||||||||| || | ||||||||||||| || || | | ||||||||||||| | || Sbjct 992285 TTAATGAGCAATCCACAGTTTCACTGTACCAGCTTACGCA--CTTAGACATGCATAGTTT 992228 Query 473 AATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||| || || ||||||| Sbjct 992227 AATCTTTGAGACAAGCATGTG-CTGCTGGCAG 992197 >seq7463 Length=1940000 Score = 118 bits (130), Expect = 3e-24 Identities = 89/104 (86%), Gaps = 3/104 (3%) Strand=Plus/Minus Query 34 CTGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTG 93 |||||| ||||| ||||||||||||||| | ||| ||| | ||||||||| ||||| Sbjct 1807075 CTGTAT---TATTTTTTGTCACTACCTCCCTGGGTCAGGAGAGAGTAATTTGCCTGCCTG 1807019 Query 94 CTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCC 137 |||||||||||| | ||||||||| ||||||||||||||||||| Sbjct 1807018 CTGCCTTCCTTGAAGGTGGTAGCCATTTCTCAGGCTCCCTCTCC 1806975 >seq1834 Length=4449226 Score = 111 bits (122), Expect = 5e-22 Identities = 64/66 (97%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 75 TGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTC 134 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1035938 TGGGTAATTTGTGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTC 1035879 Query 135 TCCGGA 140 ||| || Sbjct 1035878 TCCAGA 1035873 >seq7430 Length=5980257 Score = 107 bits (118), Expect = 6e-21 Identities = 93/112 (83%), Gaps = 5/112 (4%) Strand=Plus/Minus Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAG--ATTGCTTA 452 ||||| | | ||||||||||||||||| || | ||| ||||||||| | | ||| | Sbjct 5830242 CAAATGAGCCATAACTGATTTAATGAGTTATCCACAGATTCACTGTACTGGGAGTGC--A 5830185 Query 453 TACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||| ||| ||||||||||||||||||||||||| || |||||||||| Sbjct 5830184 TACTTAGATATGTATGGCTTAATCTTTGAGACAAGCATGTG-CTACTGGCAG 5830134 >seq6668 Length=3322862 Score = 107 bits (118), Expect = 6e-21 Identities = 94/114 (82%), Gaps = 5/114 (4%) Strand=Plus/Plus Query 393 ATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGAT--TGCT 450 |||||| | | ||| |||||||||||||| ||| |||||||||||| | || | ||| Sbjct 665224 ATCAAAGGAGCCATACCTGATTTAATGAGCTATTTGCAGTTTCACTGCACAGTTCATGC- 665282 Query 451 TATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||| ||| |||||||||| | ||||||||||||||| |||||||||| Sbjct 665283 -GTACTTAGATATGGATGGCTTAATATGTGAGACAAGCATATG-CTACTGGCAG 665334 >seq5839 Length=677508 Score = 100 bits (110), Expect = 9e-19 Identities = 90/113 (80%), Gaps = 15/113 (13%) Strand=Plus/Plus Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCA---CTGTATAGATTGCTT 451 |||| ||| ||||||||||||||||||||| | |||| || ||| | Sbjct 508943 CAAAGGAACCATAACTGATTTAATGAGCCATCCACAGTACCAGCCCTG-----------T 508991 Query 452 ATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 508992 GTACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 509043 >seq9761 Length=591845 Score = 95.1 bits (104), Expect = 4e-17 Identities = 88/110 (80%), Gaps = 5/110 (5%) Strand=Plus/Minus Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATA 454 |||| |||| |||| ||||||||||||| || ||||||||| |||| | | ||| Sbjct 447314 CAAAGAAACCATAATTGATTTAATGAGCTGTTTGCAGTTTCATTGTACTGGCCACACATA 447255 Query 455 CTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||| ||||||||||||||||||||||||||||||| ||||||||| Sbjct 447254 CTTT----TGCATGGCTTAATCTTTGAGACAAGCATATG-TTACTGGCAG 447210 >seq5317 Length=6866741 Score = 95.1 bits (104), Expect = 4e-17 Identities = 75/89 (84%), Gaps = 1/89 (1%) Strand=Plus/Minus Query 405 ATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATG 464 ||||||| || ||||||| ||| |||||||||||||| | ||| | ||||||||| Sbjct 2739592 ATAACTGCTTGAATGAGCTATTTGCAGTTTCACTGTACTGGTTGTGCGTT-TTAGACATG 2739534 Query 465 CATGGCTTAATCTTTGAGACAAGCATATG 493 ||||||||||||||||||| ||||||||| Sbjct 2739533 CATGGCTTAATCTTTGAGATAAGCATATG 2739505 >seq6184 Length=4117727 Score = 87.8 bits (96), Expect = 5e-15 Identities = 105/142 (74%), Gaps = 8/142 (6%) Strand=Plus/Plus Query 90 CCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCC 149 |||||||||||||||| |||||| |||| || ||||||||||||||| || || ||||| Sbjct 2709208 CCTGCTGCCTTCCTTGAATGTGGGAGCCATTAATCAGGCTCCCTCTCCTGACTCAAACCC 2709267 Query 150 TAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATA 209 | ||||||| | || | ||| |||| | | |||||||| || | |||| Sbjct 2709268 TGATTCCCCATCAC----TCATAAGTAGGTATGAGA----ACTACCATCAAAGGCTGATT 2709319 Query 210 GGGCAGAAATTTGAATGAACCA 231 |||| | | ||||||||| || Sbjct 2709320 AGGCAAACACTTGAATGAATCA 2709341 >seq9216 Length=6899875 Score = 82.4 bits (90), Expect = 2e-13 Identities = 79/100 (79%), Gaps = 1/100 (1%) Strand=Plus/Plus Query 405 ATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATG 464 |||||||||||||| ||| ||| |||||||| |||| | | ||||||||||| Sbjct 2611200 ATAACTGATTTAATTAGCTGTTCACAGTTTCAGTGTACTGGCCATATGTACTTAGACATT 2611259 Query 465 CATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||| |||||||||||||||||| ||||| |||||| || Sbjct 2611260 CATAGCTTAATCTTTGAGACAAATATATG-TTACTGGTAG 2611298 >seq8341 Length=6108915 Score = 82.4 bits (90), Expect = 2e-13 Identities = 87/111 (78%), Gaps = 9/111 (8%) Strand=Plus/Minus Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTA-TAGATTGCTTAT 453 |||| ||| |||||||||| |||||| | |||||||||||||| || || Sbjct 29969 CAAAGGAACTGTAACTGATTTGATGAGCTAAATGCAGTTTCACTGTACCAG---GC---- 29917 Query 454 ACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 | | |||||||||||||||||||||||||||||||| | |||||||||| Sbjct 29916 AGGCATACATGCATGGCTTAATCTTTGAGACAAGCATA-GGCTACTGGCAG 29867 >seq9886 Length=2633639 Score = 80.6 bits (88), Expect = 8e-13 Identities = 79/100 (79%), Gaps = 3/100 (3%) Strand=Plus/Plus Query 405 ATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATG 464 ||| |||||| ||||||| ||| || |||||||| | || | ||| || |||| Sbjct 2301500 ATAGCTGATTCAATGAGCTATTAGCTGTTTCACTACTGGCAGTG--TGTACCTACACATA 2301557 Query 465 CATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 | ||||||||||| ||||||||||||||| |||||||||| Sbjct 2301558 CCTGGCTTAATCTCTGAGACAAGCATATG-CTACTGGCAG 2301596 >seq6341 Length=883307 Score = 78.8 bits (86), Expect = 3e-12 Identities = 86/113 (76%), Gaps = 1/113 (1%) Strand=Plus/Minus Query 5 TCATTCCAATTACAAGACCCA-AAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCC 63 ||| ||||| |||| | || |||||| | | ||| ||||| |||||||||||| Sbjct 570409 TCAATCCAACTACAGGGCCTTGAAAGAGTCTTATATTGTTATTTTCCATCACTACCTCCC 570350 Query 64 CGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGC 116 | ||| || ||||||||||| | | ||||| ||||||||||||||||||| Sbjct 570349 CTGGTCAAGAGTGGGTAATTTGTACTCTTGCTGTCTTCCTTGGATGTGGTAGC 570297 >seq13301 Length=3398151 Score = 75.2 bits (82), Expect = 3e-11 Identities = 58/69 (84%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 425 TTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGAC 484 ||| ||||||||||||| | | |||||||||| |||||||||||||||||||||| Sbjct 21167 TTCCCAGTTTCACTGTACTGGCCGTGCATACTTAGACGTGCATGGCTTAATCTTTGAGAC 21226 Query 485 AAGCATATG 493 ||||| ||| Sbjct 21227 AAGCACATG 21235 >seq8776 Length=1066516 Score = 75.2 bits (82), Expect = 3e-11 Identities = 76/96 (79%), Gaps = 6/96 (6%) Strand=Plus/Minus Query 409 CTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATG 468 |||| ||||||||| || ||||||||| |||| ||| |||| || ||||||| Sbjct 101121 CTGACTTAATGAGCTATCTGCAGTTTCATTGTAC----TGCC-ATACATACTTATGCATG 101067 Query 469 GCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||| |||||||||| | ||||||| Sbjct 101066 GCTTAATCTTTGAGGCAAGCATATG-TTGCTGGCAG 101032 >seq8428 Length=3043144 Score = 75.2 bits (82), Expect = 3e-11 Identities = 79/99 (80%), Gaps = 5/99 (5%) Strand=Plus/Minus Query 405 ATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTAT-AGAT-TGCTTATACTTAGACA 462 |||| ||||||||| ||| || ||||| ||||| | || | ||| || | ||||| Sbjct 89483 ATAAATGATTTAATAAGCTATCTACAGTTACACTGCACCAGCTGTGCACATCC--AGACA 89426 Query 463 TGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGG 501 ||||| |||||||||||||||||||||||| | |||||| Sbjct 89425 TGCATAGCTTAATCTTTGAGACAAGCATAT-ATTACTGG 89388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510172548864