Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_007189.1 Length=6907 Score E Sequences producing significant alignments: (Bits) Value seq10043 1061 0.0 >seq10043 Length=66076 Score = 1061 bits (1176), Expect = 0.0 Identities = 706/785 (90%), Gaps = 6/785 (1%) Strand=Plus/Minus Query 26 CCAGTTGACAGCGGCCTCTGCCGAGACTTCGACGTGCTTACGAATCGTGCGCAGCCGGGT 85 ||| | || | |||| || | ||| ||| || ||||| | | ||||||||| || || Sbjct 37481 CCACTCGATACCGGCTTCGACAGAGGTTTCCACTTGCTTTTGCAGCGTGCGCAGTCGCGT 37422 Query 86 GCACACGCCCTTGATGAGGTCTTGCAACGCGCTGTACGAACCGCGCAGGTACGCGCCCGG 145 |||||||||| | ||||||| ||||| ||||| |||||||||||||| ||||||||||| Sbjct 37421 GCACACGCCCGTAATGAGGTTCTGCAAGGCGCTATACGAACCGCGCAGATACGCGCCCGG 37362 Query 146 GTTCAACAGCACATCGAGTGGGATTTCCATGTGCTTGCCGTACAGTCGCACTTCTGCGCG 205 |||||||||||||||||| |||||||||||||||||||| |||| |||||||||||||| Sbjct 37361 GTTCAACAGCACATCGAGCGGGATTTCCATGTGCTTGCCATACAAACGCACTTCTGCGCG 37302 Query 206 CACCCAGCGCGAGGACGGCAGGCCCTCGGCTTTGCCTTTCTCGTACACGCACAGTTCCTT 265 |||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||| Sbjct 37301 CACCCAGCGCGATGACGGCAGGCCCTCGGCCTTGCCCTTCTCGTACACGCACAGTTCCTT 37242 Query 266 GTGGCCTTTGCCGCCGACATACAGCGTGCAGCCGGTGTTGTGGCCTTCGTCGGAAATGAA 325 |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| Sbjct 37241 GTGGCCTTTGCCGCCGACGTACAGCGTGCAGCCGGTGTTGTGGCCTTCATCGGAAATGAA 37182 Query 326 GCGGTGGCGCGGAGGGCATCCGCCCTCGGTAAAGCCGCCCTGCGCGGCAACCTCGCGGAG 385 |||||| || || ||||| ||||| ||||||||||||||||| || |||||||||||||| Sbjct 37181 GCGGTGACGGGGCGGGCAACCGCCTTCGGTAAAGCCGCCCTGAGCTGCAACCTCGCGGAG 37122 Query 386 CGCATGCACGTCCAGGCGTTCGCCCTCGTAGTCGTCGTGCGCGCAGTCAACACGGGTGAT 445 |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| || Sbjct 37121 CGCATGCACGTCCAGGCGTTCGCCTTCGTAGTCGTCGTGCGCGCAGTCAACGCGGGTAAT 37062 Query 446 CTTGGCATCGAGCATGGCGCACTGCTTGTAGACGCGTGCCCAGTCACGAATCCACTTACA 505 |||||| || ||||||||||||||||||||||| || |||||||||||||||||||| || Sbjct 37061 CTTGGCGTCCAGCATGGCGCACTGCTTGTAGACACGCGCCCAGTCACGAATCCACTTGCA 37002 Query 506 GCCCATGCCGGTGAGGCTCAAGCACACGGTGCTTTTCTTGCCCCCGATGCCGACACGGCC 565 |||||||||||||||||||| ||||||||||||||||||||| || ||||||||||| || Sbjct 37001 GCCCATGCCGGTGAGGCTCAGGCACACGGTGCTTTTCTTGCCGCCAATGCCGACACGCCC 36942 Query 566 AACCACCT------CGTTTTCCCGGTCGATCAGCACCGCCGACTGCTCGTAGAAGTTCCA 619 || |||| ||||| ||||| || || | ||||||||||||||||||||||||| Sbjct 36941 GACAACCTCGCCCCCGTTTCCCCGGCCGCCCACCCCCGCCGACTGCTCGTAGAAGTTCCA 36882 Query 620 GTTCTTCTCGCGAATCGCACCAGCAACAACCTCGCCACGGAAGCCGAAGATGCGGAACAG 679 ||||||||| ||||||||||| ||||| || |||||||| || ||||||||||||||||| Sbjct 36881 GTTCTTCTCACGAATCGCACCGGCAACCACTTCGCCACGAAAACCGAAGATGCGGAACAG 36822 Query 680 CAACAGGTCCAGCTTCTTGCAGTTCACTTCTTCAAGGGCGGAGAGCGGGACCACAATGGT 739 ||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||| Sbjct 36821 CAAGAGGTCCAGCTTCTTGCAGTTAACTTCTTCAAGGGCAGAGAGCGGGACCACAATGGT 36762 Query 740 CAGGTAGTCGATGATTGCGTCCTGCTGACCCTTTTGGCCCGTGTTACTCCCCGGGCCAAT 799 || ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct 36761 CAAGTAGTCGATGATTTCGTCTTGCTGACCCTTTTGGCCCGTGTTACTCCCCGGGCCAAT 36702 Query 800 CTCCG 804 ||||| Sbjct 36701 CTCCG 36697 Score = 509 bits (564), Expect = 7e-141 Identities = 371/424 (88%), Gaps = 7/424 (2%) Strand=Plus/Minus Query 6486 CCATGGCTTAGGCCTTCGCCGCCACTGGCAACG-CCTTGGCCGAAAGCGGAACGAGGTCC 6544 |||||||||| | |||||||| | ||| || |||| ||| ||||||||||||||| Sbjct 37925 CCATGGCTTACGGCTTCGCCGGTGC-GGCTGCGGCCTTCGCCTGCAGCGGAACGAGGTCC 37867 Query 6545 ACGTAACGCTTCAGGATCAGGTCGCCGTACTGGCTCAGCGCGAACGACTGCGGGTCAATG 6604 ||||||||||||||||||||||| |||||||||||||| ||||||||||| || |||||| Sbjct 37866 ACGTAACGCTTCAGGATCAGGTCCCCGTACTGGCTCAGTGCGAACGACTGGGGATCAATG 37807 Query 6605 TCGTACTCGCCCGGGGGGTACGGCGGGCGCGAGCCCAGGCCCACACGGAACGGCAGCTCG 6664 |||||||||||||||||| || ||| | ||||| ||||| |||||||||||||| ||| Sbjct 37806 TCGTACTCGCCCGGGGGG---GGGGGGGGGGAGCCGAGGCCGACACGGAACGGCAGTTCG 37750 Query 6665 AAGCCGTTGCCGAAGTCGAGGCCGACCATCTGGGAGCGGATGATGGAGTTGGTCTTGCTG 6724 |||||||||||||| ||||| ||||||||||| || |||||||| ||||||||||||||| Sbjct 37749 AAGCCGTTGCCGAAATCGAGACCGACCATCTGAGAACGGATGATCGAGTTGGTCTTGCTG 37690 Query 6725 TTGTGCCGTTCTTCGACGGCGGCGGACTTTACGCGGCAGATAGGCATAGTTCTTCTCTCA 6784 |||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||| Sbjct 37689 TTGTGCCGTTCTTCGACGGCAGCGGACTTCACGCGGCAGATAGGCATAGTTCTTCCCTCA 37630 Query 6785 CATAGCGATGGAGTGGTTCACCCTTGGCAATACCGCGAAAACGTCCGGGGTGACCATCAC 6844 |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| Sbjct 37629 CATAGCGATGGAGTGGTTCACCCTTGGCAATACCGCGAAACCGTCCGGGGTGACCGTCAC 37570 Query 6845 GGACGACGCGCGCCAGCAG-GAAGTCGGTGAACGAATCACCGAACGCTCCGTGCAGGACA 6903 ||| || ||| || | | |||||||| | ||||| |||| ||||||| | ||||| Sbjct 37569 GGAGGATGCG-GCTCTCTGCGAAGTCGGCCCATGAATCGCCGAGCGCTCCGCGAAGGACG 37511 Query 6904 TTGA 6907 |||| Sbjct 37510 TTGA 37507 Score = 197 bits (218), Expect = 6e-47 Identities = 279/387 (72%), Gaps = 34/387 (9%) Strand=Plus/Minus Query 2215 TGACCGGCCCTTGGGCCGGTTTTTCTTTCCTCGGTGATCGTCTGATCACGCCCGAAGGCC 2274 ||||||||||||||||||||||||| || | || || ||| |||||||||| || | Sbjct 42964 TGACCGGCCCTTGGGCCGGTTTTTCGTTTAAGGCTGGCCGACTGGTCACGCCCGAGGGTC 42905 Query 2275 GCGAGCTACTTCCTGAAGATCTGGCCTGGCTGTCACTCACCGCCTGC-CAAGCGCAGGAA 2333 ||||||| || | ||||| || |||||| | |||||||| ||| |||||||||||| Sbjct 42904 GCGAGCTGGAACCGCAGGATCTCGCATGGCTGGCGCTCACCGC-TGCACAAGCGCAGGAA 42846 Query 2334 TGGCGCCGGATGATGGA-AGCTGCACGCTCGGTGCCGTCGATCGACAGTTCCAAGCGTGG 2392 |||||||| |||||||| ||| || || || |||||| || || Sbjct 42845 TGGCGCCGAATGATGGAGAGCGGC-----CG----CG-CGATCGGCAAGCCCC------- 42803 Query 2393 TGGCAATCTTCCTGCAGTAACGTGGGATCGTCCTGCCACTGTCGTCAA--TCTGCGG-GA 2449 || || | | | | |||| | |||| || || || ||| || | Sbjct 42802 -GGAAACCCTTGTCCTTCAACG----------CCGCCAGCGTGGTGAACCTCTCCGATGC 42754 Query 2450 CGTGGTGAGCCGGCGCAAACAGCGGTCGGCGGTGGCGATGGCTGGCCCTGACGCCGAGCC 2509 | ||| || || || ||||||| || |||||||||||||||| ||||||||||| Sbjct 42753 CTTGGCACATCGCCGGGAAAAGCGGTCATCGATGGCGATGGCTGGCCCCGACGCCGAGCC 42694 Query 2510 ACCAGCGGTAGACCTGCCGATACTGGGGCCCATGCCTCGCCAGCGCGTGTGAGGCGCTTC 2569 || |||| || ||| ||| ||| |||||| | | ||||||||||||||||||||||| Sbjct 42693 GCCCGCGGCAGTCCTACCGGTACCGGGGCCGAAACGCCGCCAGCGCGTGTGAGGCGCTTC 42634 Query 2570 CGTAGGGGCGCTGCCCCTACACCCCGG 2596 ||||||||||| ||||||||||||||| Sbjct 42633 CGTAGGGGCGCCGCCCCTACACCCCGG 42607 Score = 165 bits (182), Expect = 4e-37 Identities = 182/239 (76%), Gaps = 10/239 (4%) Strand=Plus/Minus Query 1075 TCACCCATGGCAGCCACCTTGGCGATCGGACTGGTAACGGTCCTCGTCCTGAGCGGTCCA 1134 ||| ||||| | ||||||||| || |||||||| | |||||||| |||||||||| Sbjct 36493 TCAGCCATGACGGCCACCTTGACGGCGTGACTGGTAGTCGACCTCGTCCCGAGCGGTCCA 36434 Query 1135 GCCCGAGGCGGCCAGTTCGGCGCGTGCCTGGGCGACGATGGCCGCTTCCTTAGCGCGCTG 1194 ||||| |||||||||||||||||||||||||||||||||||| ||||| ||| || Sbjct 36433 GCCCGTGGCGGCCAGTTCGGCGCGTGCCTGGGCGACGATGGCTGCTTC----GCGTGCAC 36378 Query 1195 GACGGCGGCACGA----TCACGCCGGTC-CAGCAGCCACGACACGATGCGAGCGGCACCG 1249 ||| ||| || |||||||||| |||| |||||| |||| ||| || Sbjct 36377 TACGACGGGCAGACTCCCCACGCCGGTCGAAGCA-CCACGAAACGAGTTTGGCGCTGCCA 36319 Query 1250 ATGGAGACGACCGCAATGGACGCAAGCAGCACGAAGGTAATCAACGGGTCGATCATGCC 1308 || || ||| || | ||| ||| ||||||||||||| ||| ||||| |||||||| || Sbjct 36318 ATCGAAACGGCCACGATGACCGCCAGCAGCACGAAGGCAATGAACGGATCGATCATCCC 36260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 21983475065996