Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq8995 230 2e-55
seq13960 120 2e-22
seq608 89.7 4e-13
>seq8995
Length=8301158
Score = 230 bits (254), Expect = 2e-55
Identities = 609/914 (67%), Gaps = 21/914 (2%)
Strand=Plus/Minus
Query 61027 GAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGAT 61086
||||| || || ||| || || || || || || | || || ||||| || | |||
Sbjct 6972278 GAACCACTTCTGAGAGAAAACCCACGCCGCTTTGTCATCTTTCCTATCGAATACCATGAT 6972219
Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146
||||||| ||||| || || || || |||||||| ||||| | |||||||| || |
Sbjct 6972218 ATTTGGCAGATGTATAAGAAAGCTGAGGCTTCCTTTTGGACAGCTGAGGAGGTGGACCTT 6972159
Query 61147 TCCAAAGACATGAATGACTGGGAG--CGTTTATCGAGCGGTGAACAACATTTCATTAAAC 61204
||||| ||||| | ||||||| | | | | | || || | |||| ||| |
Sbjct 6972158 TCCAAGGACATTCAGCACTGGGAAGCCCTGAAGCCTGAGGAGAG--ATATTTTATTTCCC 6972101
Query 61205 ATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG-T 61263
||||| |||| |||||||| || || || || || ||||| || || |||| || |
Sbjct 6972100 ATGTGCTGGCTTTCTTTGCAGCAAGTGATGGCATAGTAAATGAAAACTTGGTGGAGCGGT 6972041
Query 61264 TTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATG 61323
|| || || || || || | | ||||| | ||||||||| |||||||| |||||||||
Sbjct 6972040 TTAGC-CAAGAAGTTCAGATTACCGAGGCTCCTTGTTTCTATGGCTTCCAAATTGCCATG 6971982
Query 61324 GAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCG 61383
|| || | || || || ||||| ||| | ||||| || || ||||| | ||
Sbjct 6971981 GAAAACATACATTCTGAAATGTATAGTCTCCTCATTGACACTTACATTAAAGATTCCAAA 6971922
Query 61384 GAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGAT 61443
||| | ||| | ||||||||||| |||||||| || |||||| ||| || |||
Sbjct 6971921 GAAAGGGAATTTCTCTTCAATGCCATTGAGACGATGCCTTGTGTGAAGAAGAAGGCAGAT 6971862
Query 61444 TGGGCCTTCAATTGGATCACCAGTACAACG--GCTACATTTGGTGAACGATTGCTGGCAT 61501
|||||||| |||| | |||| | ||||||| ||| ||||| || | || |
Sbjct 6971861 TGGGCCTTGCGCTGGA--CTGGGGACAAAGAAGCTACATATGGAGAACGTGTGGTAGCCT 6971804
Query 61502 TTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGA 61561
|||| | || || || | || || || || ||||| | || || ||| | ||||
Sbjct 6971803 TTGCTGCAGTGGAAGGCATCTTCTTTTCCGGTTCTTTTGCGTCTATATTCTGGCTCAAGA 6971744
Query 61562 AACGTGGACTTATGCCCGGTCTGACCTTCAGCAATG-AGTTGATATCACGCGACGAGGGC 61620
|||| ||||| ||||| || || || || ||||| | || || || | || |||||
Sbjct 6971743 AACGAGGACTGATGCCTGGCCTCACGTTTTCCAATGAACTTATTAGCA-GAGATGAGGGT 6971685
Query 61621 ATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAG 61680
|||| ||||| ||| | || | ||||||| | ||| || | || ||| |
Sbjct 6971684 TTGCACTGTGACTTTACCTGCCTGATGTTCAAAC---ACCTGTTGCACAAACCTTCGAAA 6971628
Query 61681 GAGCGTGTGGGTGAGATTGTTCGT-GAGGCGGTAACTATCGAACAGGAATTTCTGACTGA 61739
|| | || || | | |||| | || || | || |||||||| || || || ||
Sbjct 6971627 CAGAGAGTAAAGGA-AATAATCGTCAATGCAGTTAGGATAGAACAGGAGTTCCTTACGGA 6971569
Query 61740 CGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATT 61799
|| |||| || ||||| || |||||||| | ||| |||||| || || ||
Sbjct 6971568 GGCCCTGCCTGTGAAGCTCATTGGGATGAATTGCACTTTGATGAAGCAGTACATCGAGTT 6971509
Query 61800 TGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGC--GGATCTATAATACGAAAAAC 61857
|| || || | || || | || |||| | ||| || | | || | ||||
Sbjct 6971508 CGTGGCAGATAGACTTATGCTGGAGCTGGG-CTTTAGCAAGGTTTTCAAAGTAG-AAAAT 6971451
Query 61858 CCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGT 61917
|| ||||| || ||||| | ||||| ||||| || ||||| || || || ||||| |
Sbjct 6971450 CCGTTTGACTTTATGGAAAATATTTCACTGGAGGGGAAGACTAACTTCTTTGAGAAGAGA 6971391
Query 61918 GTAGGCGACTATCA 61931
||| |||| ||||
Sbjct 6971390 GTAAGCGAGAATCA 6971377
Score = 116 bits (128), Expect = 3e-21
Identities = 356/539 (66%), Gaps = 15/539 (3%)
Strand=Plus/Minus
Query 61399 TTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGG 61458
||||||||||| |||||||| || |||||| ||| || ||||||||||| |||
Sbjct 6969038 TTCAATGCCATTGAGACGATGCCTTGTGTGAAGAAGAAGGCAGATTGGGCCTTGCGCTGG 6968979
Query 61459 ATCACCAGTACAACG--GCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGG 61516
| | |||| | ||||||| ||| ||||| || | || ||||| | || || |
Sbjct 6968978 A--CTGGGGACAAAGAAGCTACATATGGAGAACGTGTGGTAGCCTTTGCTGCAGTGGAAG 6968921
Query 61517 GTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGC 61576
| | || || || || ||||| | || || ||| | |||||||| ||||| ||||
Sbjct 6968920 GCATCTTCTTTTCCGGTTCTTTTGCGTCTATATTCTGGCTCAAGAAACGAGGACTGATGC 6968861
Query 61577 CCGGTCTGACCTTCAGCAATG-AGTTGATATCACGCGACGAGGGCATGCATTGTGATTTT 61635
| || || || || ||||| | || || || | || ||||| |||| ||||| |||
Sbjct 6968860 CTGGCCTCACGTTTTCCAATGAACTTATTAGCA-GAGATGAGGGTTTGCACTGTGACTTT 6968802
Query 61636 GCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAG 61695
| || | ||||||| | ||| || | || ||| | || | || ||
Sbjct 6968801 ACCTGCCTGATGTTCAAAC---ACCTGTTGCACAAACCTTCGAAACAGAGAGTAAAGGA- 6968746
Query 61696 ATTGTTCGT-GAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTC 61754
| | |||| | || || | || |||||||| || || || || || |||| ||
Sbjct 6968745 AATAATCGTCAATGCAGTTAGGATAGAACAGGAGTTCCTTACGGAGGCCCTGCCTGTGAA 6968686
Query 61755 ACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCT 61814
||||| || |||||||| | ||| |||||| || || || || || || | ||
Sbjct 6968685 GCTCATTGGGATGAATTGCACTTTGATGAAGCAGTACATCGAGTTCGTGGCAGATAGACT 6968626
Query 61815 GTTGGTCGATTTGGGTATGAAGC--GGATCTATAATACGAAAAACCCATTTGATTTCATG 61872
|| | || |||| | ||| || | | || | |||| || ||||| || |||
Sbjct 6968625 TATGCTGGAGCTGGG-CTTTAGCAAGGTTTTCAAAGTAG-AAAATCCGTTTGACTTTATG 6968568
Query 61873 GACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931
|| | ||||| ||||| || ||||| || || || ||||| | |||||||| |||||
Sbjct 6968567 GAAAATATTTCACTGGAGGGGAAGACTAACTTCTTTGAGAAGAGAGTAGGCGAGTATCA 6968509
>seq13960
Length=3940437
Score = 120 bits (132), Expect = 2e-22
Identities = 113/144 (78%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108
||||||||| || ||||| |||||||| || ||||| ||||| ||||| ||||| ||
Sbjct 2057894 GGTATACTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTTCCCAAGTTCTGCTG 2057953
Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168
|| ||||| ||||| || | ||| ||||| | ||||||||| || || ||||| ||
Sbjct 2057954 GTTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGGGGTACCTGTCTCTGTCTG 2058013
Query 66169 GGACTCAATGATGGCGTGCCAAAG 66192
|||||||||||||| | ||||||
Sbjct 2058014 AGACTCAATGATGGCATACCAAAG 2058037
>seq608
Length=3558542
Score = 89.7 bits (98), Expect = 4e-13
Identities = 84/107 (79%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329
||||| || || || | ||||| || |||||||| ||||| || ||| ||| ||||||
Sbjct 2083247 CAGGAAGTACAGGTTCCAGAGGCTCGCTGTTTCTATGGCTTTCAAATTCTCATCGAGAAT 2083306
Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376
|| ||||| |||||||||||| | || || || || |||||||| ||
Sbjct 2083307 GTTCACTCAGAGATGTACAGTTTGCTAATAGACACTTACATCAGAGA 2083353
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397495033723760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |