Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq8995 230 2e-55 seq13960 120 2e-22 seq608 89.7 4e-13 >seq8995 Length=8301158 Score = 230 bits (254), Expect = 2e-55 Identities = 609/914 (67%), Gaps = 21/914 (2%) Strand=Plus/Minus Query 61027 GAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGAT 61086 ||||| || || ||| || || || || || || | || || ||||| || | ||| Sbjct 6972278 GAACCACTTCTGAGAGAAAACCCACGCCGCTTTGTCATCTTTCCTATCGAATACCATGAT 6972219 Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 ||||||| ||||| || || || || |||||||| ||||| | |||||||| || | Sbjct 6972218 ATTTGGCAGATGTATAAGAAAGCTGAGGCTTCCTTTTGGACAGCTGAGGAGGTGGACCTT 6972159 Query 61147 TCCAAAGACATGAATGACTGGGAG--CGTTTATCGAGCGGTGAACAACATTTCATTAAAC 61204 ||||| ||||| | ||||||| | | | | | || || | |||| ||| | Sbjct 6972158 TCCAAGGACATTCAGCACTGGGAAGCCCTGAAGCCTGAGGAGAG--ATATTTTATTTCCC 6972101 Query 61205 ATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG-T 61263 ||||| |||| |||||||| || || || || || ||||| || || |||| || | Sbjct 6972100 ATGTGCTGGCTTTCTTTGCAGCAAGTGATGGCATAGTAAATGAAAACTTGGTGGAGCGGT 6972041 Query 61264 TTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATG 61323 || || || || || || | | ||||| | ||||||||| |||||||| ||||||||| Sbjct 6972040 TTAGC-CAAGAAGTTCAGATTACCGAGGCTCCTTGTTTCTATGGCTTCCAAATTGCCATG 6971982 Query 61324 GAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCG 61383 || || | || || || ||||| ||| | ||||| || || ||||| | || Sbjct 6971981 GAAAACATACATTCTGAAATGTATAGTCTCCTCATTGACACTTACATTAAAGATTCCAAA 6971922 Query 61384 GAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGAT 61443 ||| | ||| | ||||||||||| |||||||| || |||||| ||| || ||| Sbjct 6971921 GAAAGGGAATTTCTCTTCAATGCCATTGAGACGATGCCTTGTGTGAAGAAGAAGGCAGAT 6971862 Query 61444 TGGGCCTTCAATTGGATCACCAGTACAACG--GCTACATTTGGTGAACGATTGCTGGCAT 61501 |||||||| |||| | |||| | ||||||| ||| ||||| || | || | Sbjct 6971861 TGGGCCTTGCGCTGGA--CTGGGGACAAAGAAGCTACATATGGAGAACGTGTGGTAGCCT 6971804 Query 61502 TTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGA 61561 |||| | || || || | || || || || ||||| | || || ||| | |||| Sbjct 6971803 TTGCTGCAGTGGAAGGCATCTTCTTTTCCGGTTCTTTTGCGTCTATATTCTGGCTCAAGA 6971744 Query 61562 AACGTGGACTTATGCCCGGTCTGACCTTCAGCAATG-AGTTGATATCACGCGACGAGGGC 61620 |||| ||||| ||||| || || || || ||||| | || || || | || ||||| Sbjct 6971743 AACGAGGACTGATGCCTGGCCTCACGTTTTCCAATGAACTTATTAGCA-GAGATGAGGGT 6971685 Query 61621 ATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAG 61680 |||| ||||| ||| | || | ||||||| | ||| || | || ||| | Sbjct 6971684 TTGCACTGTGACTTTACCTGCCTGATGTTCAAAC---ACCTGTTGCACAAACCTTCGAAA 6971628 Query 61681 GAGCGTGTGGGTGAGATTGTTCGT-GAGGCGGTAACTATCGAACAGGAATTTCTGACTGA 61739 || | || || | | |||| | || || | || |||||||| || || || || Sbjct 6971627 CAGAGAGTAAAGGA-AATAATCGTCAATGCAGTTAGGATAGAACAGGAGTTCCTTACGGA 6971569 Query 61740 CGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATT 61799 || |||| || ||||| || |||||||| | ||| |||||| || || || Sbjct 6971568 GGCCCTGCCTGTGAAGCTCATTGGGATGAATTGCACTTTGATGAAGCAGTACATCGAGTT 6971509 Query 61800 TGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGC--GGATCTATAATACGAAAAAC 61857 || || || | || || | || |||| | ||| || | | || | |||| Sbjct 6971508 CGTGGCAGATAGACTTATGCTGGAGCTGGG-CTTTAGCAAGGTTTTCAAAGTAG-AAAAT 6971451 Query 61858 CCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGT 61917 || ||||| || ||||| | ||||| ||||| || ||||| || || || ||||| | Sbjct 6971450 CCGTTTGACTTTATGGAAAATATTTCACTGGAGGGGAAGACTAACTTCTTTGAGAAGAGA 6971391 Query 61918 GTAGGCGACTATCA 61931 ||| |||| |||| Sbjct 6971390 GTAAGCGAGAATCA 6971377 Score = 116 bits (128), Expect = 3e-21 Identities = 356/539 (66%), Gaps = 15/539 (3%) Strand=Plus/Minus Query 61399 TTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGG 61458 ||||||||||| |||||||| || |||||| ||| || ||||||||||| ||| Sbjct 6969038 TTCAATGCCATTGAGACGATGCCTTGTGTGAAGAAGAAGGCAGATTGGGCCTTGCGCTGG 6968979 Query 61459 ATCACCAGTACAACG--GCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGG 61516 | | |||| | ||||||| ||| ||||| || | || ||||| | || || | Sbjct 6968978 A--CTGGGGACAAAGAAGCTACATATGGAGAACGTGTGGTAGCCTTTGCTGCAGTGGAAG 6968921 Query 61517 GTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGC 61576 | | || || || || ||||| | || || ||| | |||||||| ||||| |||| Sbjct 6968920 GCATCTTCTTTTCCGGTTCTTTTGCGTCTATATTCTGGCTCAAGAAACGAGGACTGATGC 6968861 Query 61577 CCGGTCTGACCTTCAGCAATG-AGTTGATATCACGCGACGAGGGCATGCATTGTGATTTT 61635 | || || || || ||||| | || || || | || ||||| |||| ||||| ||| Sbjct 6968860 CTGGCCTCACGTTTTCCAATGAACTTATTAGCA-GAGATGAGGGTTTGCACTGTGACTTT 6968802 Query 61636 GCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAG 61695 | || | ||||||| | ||| || | || ||| | || | || || Sbjct 6968801 ACCTGCCTGATGTTCAAAC---ACCTGTTGCACAAACCTTCGAAACAGAGAGTAAAGGA- 6968746 Query 61696 ATTGTTCGT-GAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTC 61754 | | |||| | || || | || |||||||| || || || || || |||| || Sbjct 6968745 AATAATCGTCAATGCAGTTAGGATAGAACAGGAGTTCCTTACGGAGGCCCTGCCTGTGAA 6968686 Query 61755 ACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCT 61814 ||||| || |||||||| | ||| |||||| || || || || || || | || Sbjct 6968685 GCTCATTGGGATGAATTGCACTTTGATGAAGCAGTACATCGAGTTCGTGGCAGATAGACT 6968626 Query 61815 GTTGGTCGATTTGGGTATGAAGC--GGATCTATAATACGAAAAACCCATTTGATTTCATG 61872 || | || |||| | ||| || | | || | |||| || ||||| || ||| Sbjct 6968625 TATGCTGGAGCTGGG-CTTTAGCAAGGTTTTCAAAGTAG-AAAATCCGTTTGACTTTATG 6968568 Query 61873 GACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931 || | ||||| ||||| || ||||| || || || ||||| | |||||||| ||||| Sbjct 6968567 GAAAATATTTCACTGGAGGGGAAGACTAACTTCTTTGAGAAGAGAGTAGGCGAGTATCA 6968509 >seq13960 Length=3940437 Score = 120 bits (132), Expect = 2e-22 Identities = 113/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||||||||| || ||||| |||||||| || ||||| ||||| ||||| ||||| || Sbjct 2057894 GGTATACTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTTCCCAAGTTCTGCTG 2057953 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 || ||||| ||||| || | ||| ||||| | ||||||||| || || ||||| || Sbjct 2057954 GTTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGGGGTACCTGTCTCTGTCTG 2058013 Query 66169 GGACTCAATGATGGCGTGCCAAAG 66192 |||||||||||||| | |||||| Sbjct 2058014 AGACTCAATGATGGCATACCAAAG 2058037 >seq608 Length=3558542 Score = 89.7 bits (98), Expect = 4e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 ||||| || || || | ||||| || |||||||| ||||| || ||| ||| |||||| Sbjct 2083247 CAGGAAGTACAGGTTCCAGAGGCTCGCTGTTTCTATGGCTTTCAAATTCTCATCGAGAAT 2083306 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376 || ||||| |||||||||||| | || || || || |||||||| || Sbjct 2083307 GTTCACTCAGAGATGTACAGTTTGCTAATAGACACTTACATCAGAGA 2083353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397495033723760