Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_011356.1 Length=54896 Score E Sequences producing significant alignments: (Bits) Value seq8065 105 2e-18 seq9795 93.3 1e-14 seq659 91.5 5e-14 >seq8065 Length=27066 Score = 105 bits (116), Expect = 2e-18 Identities = 115/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 6655 AAAGTCCATGCCATCAAACTGCTGGTTTTCATTGATGATGCGGGACCAGCCATCAACGCC 6714 ||| |||| ||||||||| | || | ||| | |||||| |||||||||||||| || Sbjct 26813 AAATTCCAAGCCATCAAAATTAGGGCTACTATTTACGATGCGCGACCAGCCATCAACACC 26754 Query 6715 CACCACCGGAACGATGCCGTTCTGCTTATCAGGGAAGGCGTAAATTTCTTTCGTCCACGG 6774 || || || | || || || | ||||||||||| || || |||||||| |||||||| Sbjct 26753 AACAACAGGGATTATCCCTTTATTTTTATCAGGGAAAGCATATATTTCTTTGGTCCACGG 26694 Query 6775 ATTAAGGCCGTACTGGTTGGCGACGATCAACAA 6807 |||||| || ||| || ||||||||||| Sbjct 26693 ATTAAGCTTATATTGGCCTGCAACGATCAACAA 26661 >seq9795 Length=220374 Score = 93.3 bits (102), Expect = 1e-14 Identities = 112/152 (74%), Gaps = 3/152 (2%) Strand=Plus/Minus Query 6655 AAAGTCCATGCCATCAAACTGCTGGTTTTCATTGATGATGCGGGACCAGCCATCAACGCC 6714 ||| ||||||||||| || ||| | | ||| || |||||||| | ||||||||| || || Sbjct 198543 AAACTCCATGCCATCGAATTGCGGATGTTCGTTCATGATGCGTGTCCAGCCATCTACACC 198484 Query 6715 CACCACCGGAACGATGCCGTTCTGCTTATCAGGGAAGGCGTAAATTTCTTTCGTCCACGG 6774 || |||||||| |||||| |||||| || |||||||||| ||||| | || Sbjct 198483 AACAACCGGAACAATGCCG---CCCTTATCTGGATAGGCGTAAATCTCTTTAACAAAGGG 198427 Query 6775 ATTAAGGCCGTACTGGTTGGCGACGATCAACA 6806 ||| | || || | ||| || || |||| || Sbjct 198426 ATTTAATCCATATTCGTTTGCAACAATCATCA 198395 >seq659 Length=6232 Score = 91.5 bits (100), Expect = 5e-14 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 6655 AAAGTCCATGCCATCAAACTGCTGGTTTTCATTGATGATGCGGGACCAGCCATCAACGCC 6714 ||| |||| ||||||||| | | | ||| | ||||| ||||| |||||||| || Sbjct 866 AAATTCCAAGCCATCAAAGTTAGGACTACTATTTACAATGCGTGACCAACCATCAACACC 925 Query 6715 CACCACCGGAACGATGCCGTTCTGCTTATCAGGGAAGGCGTAAATTTCTTTCGTCCACGG 6774 || || || | ||| || || | ||||||||||||||||| || || || ||||| || Sbjct 926 AACAACAGGTATGATTCCTTTATTTTTATCAGGGAAGGCGTATATCTCCTTAGTCCAAGG 985 Query 6775 ATTAAGGCCGTACTGGTTGGCGACGATCAACAA 6807 |||||| || ||| || ||||||||||| Sbjct 986 ATTAAGCTTATATTGGCCTGCAACGATCAACAA 1018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 175514207948364