Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_031120.1
Length=241147
Score E
Sequences producing significant alignments: (Bits) Value
seq10734 167 4e-36
seq9538 159 5e-34
seq6415 154 2e-32
seq7053 149 1e-30
seq9470 125 1e-23
seq9639 118 2e-21
seq11739 87.8 3e-12
seq646 86.0 1e-11
>seq10734
Length=9239
Score = 167 bits (184), Expect = 4e-36
Identities = 192/256 (75%), Gaps = 2/256 (1%)
Strand=Plus/Plus
Query 196108 CGGCCACGACAAAGCTGACCGTACCGGCACAGGCACTA-CGTCCTATCTCGGCGCACAGA 196166
|||| ||| ||| ||| || |||||||| ||||| | | | | | ||| ||||
Sbjct 1260 CGGCGCCGAGAAAAGTGATCGCACCGGCACCGGCACCCGCAGCGTGTTT-GGCTGGCAGA 1318
Query 196167 TGCGCTTCGATCTGCAAGACGGATTCCCGCTGGTCACCACGAAGAAACTCCATCTGCGTT 196226
|||| ||| | ||| || || ||||||||||||||||| ||||| || || ||||| |
Sbjct 1319 TGCGTTTCAACCTGGCCGAAGGCTTCCCGCTGGTCACCACCAAGAAGCTGCACCTGCGCT 1378
Query 196227 CCATCATTCATGAACTGCTGTGGTTCCTCAACGGGGACACCAACATCAAGTACCTGAATG 196286
| ||||| || || |||||||||||||| || || |||||||||||| |||||||| |
Sbjct 1379 CGATCATCCACGAGCTGCTGTGGTTCCTGAAGGGCGACACCAACATCGGCTACCTGAAGG 1438
Query 196287 ACAACGGTGTCTCTATCTGGAACGAGTGGGCGAACGAACTCGGTAACCTGGGGCCGGTTT 196346
||||| || |||||| |||||||||| |||| || |||| || ||||| |
Sbjct 1439 ACAACCAGGTACGGATCTGGGACGAGTGGGCCGACGACAATGGCGACCTCGGCCCGGTCT 1498
Query 196347 ACGGTAAGCAGTGGCG 196362
|||| |||||||||||
Sbjct 1499 ACGGCAAGCAGTGGCG 1514
Score = 104 bits (114), Expect = 4e-17
Identities = 215/315 (68%), Gaps = 14/315 (4%)
Strand=Plus/Plus
Query 196784 TGTCAGCTGTATCAGCGTAGTGCGGATATGTTCCTCGGTGTACCGTTCAACATCGCGTCT 196843
|| |||||||| ||||| || | || || |||||||| || ||||||||||||||
Sbjct 1703 TGCCAGCTGTACCAGCGCAGCGGCGACATCTTCCTCGGAGTGCCGTTCAACATCGCCAGC 1762
Query 196844 TACGCATTGCTGATTCACATGGTGGCGCA----ACAGGTTAACATGGTACCGGGCGAGTT 196899
||||| |||||| |||||||||||||| || || | ||| |||||| ||
Sbjct 1763 TACGCGCTGCTGACCCACATGGTGGCGCAGGCCACCGG----CCTGGGCGTGGGCGACTT 1818
Query 196900 CGTTTGGACTGGC--GGTGACGTCCACATCTACTCCAATCACATGGAACAGGTAGAAGAA 196957
|| || || || || || | ||| | || || || ||| | || |||| ||
Sbjct 1819 CG--TGCACACGCTGGGCGATGCGCACCTGTATTCGAACCACTTCGAGCAGGCGCGCGAG 1876
Query 196958 CAGCTGTCTCGTAAACCGAAAGCGTTGCCGACGCTGGTTATCAAACGCAAACCGGACAG- 197016
|||||||| ||| ||||| ||| |||||||||| || | ||| | | ||| |
Sbjct 1877 CAGCTGTCGCGTGAACCGCGCGCGCTGCCGACGCT-GTGGTTGAACCCGGAGGTGACCGA 1935
Query 197017 TATCTTCGATTACAAATTCGAAGACTTCGAACTGGTAGGCTACGATCCGCATCCGGCGAT 197076
| |||| | | | ||||| ||| || | | |||||||| ||||| ||||| ||
Sbjct 1936 CCTGTTCGGCTTCCAGTTCGACGACATCCGCATCGACGGCTACGACCCGCACCCGGCCAT 1995
Query 197077 TAAAGCCCCGGTGGC 197091
|| || ||||||||
Sbjct 1996 CAAGGCGCCGGTGGC 2010
>seq9538
Length=646221
Score = 159 bits (176), Expect = 5e-34
Identities = 181/240 (75%), Gaps = 2/240 (1%)
Strand=Plus/Plus
Query 196124 GACCGTACCGGCACAGGCACTACGTCCTATCT-CGGCGCACAGATGCGCTTCGATCTGCA 196182
||||| |||||||| ||||| ||| | | | |||| |||||||| |||||||||
Sbjct 486501 GACCGCACCGGCACCGGCAC-ACGCTCGGTGTTCGGCTATCAGATGCGTTTCGATCTGGC 486559
Query 196183 AGACGGATTCCCGCTGGTCACCACGAAGAAACTCCATCTGCGTTCCATCATTCATGAACT 196242
||||| |||||| || | ||||| |||||||| || ||| || ||||| || |||||
Sbjct 486560 CGACGGCTTCCCGGTGCTTACCACCAAGAAACTGCACCTGAAGTCGATCATCCACGAACT 486619
Query 196243 GCTGTGGTTCCTCAACGGGGACACCAACATCAAGTACCTGAATGACAACGGTGTCTCTAT 196302
|||||||| || ||| || ||||||||||| || ||||| ||| |||| ||| | ||
Sbjct 486620 TCTGTGGTTTCTGGCCGGCGATACCAACATCAAATATCTGAACGACCACGGCGTCACCAT 486679
Query 196303 CTGGAACGAGTGGGCGAACGAACTCGGTAACCTGGGGCCGGTTTACGGTAAGCAGTGGCG 196362
|||| ||||||||||| | | || | || || ||||| || || |||||||||||
Sbjct 486680 CTGGGACGAGTGGGCGGATGCCAAGGGCGATCTCGGCCCGGTCTATGGCAAGCAGTGGCG 486739
Score = 86.0 bits (94), Expect = 1e-11
Identities = 153/220 (70%), Gaps = 10/220 (5%)
Strand=Plus/Plus
Query 196779 TGTCTTGTCAGCTGTATCAGCGTAGTGCGGATATGTTCCTCGGTGTACCGTTCAACATCG 196838
|||| || ||||| || |||||| ||||| || || ||||| || |||||||||||||
Sbjct 486919 TGTCATGCCAGCTCTACCAGCGTTCCGCGGACATCTTTCTCGGCGTGCCGTTCAACATCG 486978
Query 196839 CGTCTTACGCATTGCTGATTCACATGGTGGCGCAACAGGTTA---ACATGGTACCGGGCG 196895
| || || || |||| | ||||||||| ||||| | || ||| ||||
Sbjct 486979 CTTCCTATGCGCTGCTCACCATGATGGTGGCG---CAGGTGACGGGGCTGAAACCCGGCG 487035
Query 196896 AGTTCGTTTGGACTGGC--GGTGACGTCCACATCTACTCCAATCACATGGAACAGGTAGA 196953
| |||| || || || ||||||| |||||||| ||||| || | |||||||
Sbjct 487036 ATTTCG--TGCACACGCTGGGTGACGCGCACATCTATTCCAACCATTTCGAACAGGCGCG 487093
Query 196954 AGAACAGCTGTCTCGTAAACCGAAAGCGTTGCCGACGCTG 196993
|| ||| || || || |||||| | |||||||| ||
Sbjct 487094 CGAGCAGTTGCAGCGCAAGCCGAAAACACTGCCGACGATG 487133
>seq6415
Length=247467
Score = 154 bits (170), Expect = 2e-32
Identities = 182/242 (75%), Gaps = 6/242 (2%)
Strand=Plus/Plus
Query 196124 GACCGTACCGGCACAGGCACTACGTCCTATCTCGGCGCACAGATGCGCTTCGATCTG--C 196181
||||| || ||||| ||||| | | ||||| ||||| |||||||||||| |
Sbjct 52969 GACCGCACGGGCACCGGCACGCTGGGCGTGTTCGGCCGGCAGATCCGCTTCGATCTGGCC 53028
Query 196182 AAGACGGATTCCCGCTGGTCACCACGAAGAAACTCCATCTGCGTTCCATCATTCAT-GAA 196240
||| || |||||| | | ||| | ||||| || || ||||| || |||| |||| ||
Sbjct 53029 AAG--GGCTTCCCGGTTCTGACCTCCAAGAAGCTGCACCTGCGCTCGATCA-TCATCGAG 53085
Query 196241 CTGCTGTGGTTCCTCAACGGGGACACCAACATCAAGTACCTGAATGACAACGGTGTCTCT 196300
|||||||||||||| || || |||||||||||| ||||| || |||||||| ||
Sbjct 53086 CTGCTGTGGTTCCTGAAGGGCGACACCAACATCGCCTACCTCAAGGACAACGGCGTGCGC 53145
Query 196301 ATCTGGAACGAGTGGGCGAACGAACTCGGTAACCTGGGGCCGGTTTACGGTAAGCAGTGG 196360
|||||| |||||||||| ||||| ||| | || || ||||| ||||| |||||||||
Sbjct 53146 ATCTGGGACGAGTGGGCCGACGAAAACGGCGATCTTGGCCCGGTCTACGGCAAGCAGTGG 53205
Query 196361 CG 196362
||
Sbjct 53206 CG 53207
>seq7053
Length=464797
Score = 149 bits (164), Expect = 1e-30
Identities = 179/241 (74%), Gaps = 2/241 (1%)
Strand=Plus/Minus
Query 196124 GACCGTACCGGCACAGGCACTACGTCCTATCT-CGGCGCACAGATGCGCTTCGATCTGCA 196182
||||| |||||||| || || || | ||| ||| |||||||||||||| ||
Sbjct 70840 GACCGCACCGGCACGGGTACG-CGCTCGGTCTTCGGTTACCAGATGCGCTTCGACCTTTC 70782
Query 196183 AGACGGATTCCCGCTGGTCACCACGAAGAAACTCCATCTGCGTTCCATCATTCATGAACT 196242
|| || || ||| | ||||||| ||||| || |||||||| |||||||| |||||| |
Sbjct 70781 CGAAGGTTTTCCGGTTCTCACCACCAAGAAGCTGCATCTGCGCTCCATCATCCATGAATT 70722
Query 196243 GCTGTGGTTCCTCAACGGGGACACCAACATCAAGTACCTGAATGACAACGGTGTCTCTAT 196302
|||||||||||| || || || ||||| ||| || || || || ||||| || || ||
Sbjct 70721 GCTGTGGTTCCTGAAGGGCGATACCAATATCGCCTATCTCAAGGAAAACGGCGTTTCCAT 70662
Query 196303 CTGGAACGAGTGGGCGAACGAACTCGGTAACCTGGGGCCGGTTTACGGTAAGCAGTGGCG 196362
|||| |||| ||||| |||| ||| | || || ||||| || ||| |||||||||
Sbjct 70661 CTGGGACGAATGGGCCGACGAGAACGGCGATCTCGGCCCGGTCTATGGTGCGCAGTGGCG 70602
Query 196363 T 196363
|
Sbjct 70601 T 70601
Score = 89.7 bits (98), Expect = 8e-13
Identities = 125/174 (72%), Gaps = 6/174 (3%)
Strand=Plus/Minus
Query 196779 TGTCTTGTCAGCTGTATCAGCGTAGTGCGGATATGTTCCTCGGTGTACCGTTCAACATCG 196838
|||| || ||||| |||||||| ||| ||||| |||||||| || |||||||||||||
Sbjct 70422 TGTCCTGCCAGCTCTATCAGCGCTCTGCCGATATCTTCCTCGGCGTGCCGTTCAACATCG 70363
Query 196839 CGTCTTACGCATTGCTGATTCACATGGTGGCGCAACAGGTTA---ACATGGTACCGGGCG 196895
| || || || |||||| | ||||||||| ||||| | | || ||||| |
Sbjct 70362 CCTCCTATGCGCTGCTGACACTGATGGTGGCG---CAGGTCACGGGCCTGAAGCCGGGTG 70306
Query 196896 AGTTCGTTTGGACTGGCGGTGACGTCCACATCTACTCCAATCACATGGAACAGG 196949
| |||||| || ||||||| || ||||| ||||||| | || ||||
Sbjct 70305 ATTTCGTTCATACGCTGGGTGACGCGCATATCTATGCCAATCATTTCGAGCAGG 70252
>seq9470
Length=127963
Score = 125 bits (138), Expect = 1e-23
Identities = 171/239 (72%), Gaps = 0/239 (0%)
Strand=Plus/Minus
Query 196124 GACCGTACCGGCACAGGCACTACGTCCTATCTCGGCGCACAGATGCGCTTCGATCTGCAA 196183
||||| |||||||| ||||| | | ||||| |||||||||||||| |||
Sbjct 53204 GACCGCACCGGCACCGGCACCCTGGGCGTCTTCGGCCGCCAGATGCGCTTCGACCTGGCG 53145
Query 196184 GACGGATTCCCGCTGGTCACCACGAAGAAACTCCATCTGCGTTCCATCATTCATGAACTG 196243
|| || |||||| | ||||| ||||| || || ||||| || ||||| || ||
Sbjct 53144 CGGGGCTTTCCGCTGCTGACCACCAAGAAGCTGCACCTGCGCTCGATCATCGTCGAGCTT 53085
Query 196244 CTGTGGTTCCTCAACGGGGACACCAACATCAAGTACCTGAATGACAACGGTGTCTCTATC 196303
||||||||||| ||| || ||||||||| | ||||| |||||||| ||| |||
Sbjct 53084 CTGTGGTTCCTGCGCGGCGAGACCAACATCGCCTGGCTGAAGGACAACGGGGTCAGCATC 53025
Query 196304 TGGAACGAGTGGGCGAACGAACTCGGTAACCTGGGGCCGGTTTACGGTAAGCAGTGGCG 196362
||| |||| ||||| ||| || | || || ||||| ||||| |||||||||||
Sbjct 53024 TGGGACGAATGGGCCGACGCCGAGGGCGAGCTCGGTCCGGTCTACGGCAAGCAGTGGCG 52966
>seq9639
Length=103419
Score = 118 bits (130), Expect = 2e-21
Identities = 211/308 (69%), Gaps = 0/308 (0%)
Strand=Plus/Minus
Query 196784 TGTCAGCTGTATCAGCGTAGTGCGGATATGTTCCTCGGTGTACCGTTCAACATCGCGTCT 196843
|| |||||||| ||||| || ||||| || ||||| || || || |||||||||||
Sbjct 3871 TGCCAGCTGTACCAGCGCAGCGCGGACATCTTCCTGGGCGTTCCCTTCAACATCGCCAGC 3812
Query 196844 TACGCATTGCTGATTCACATGGTGGCGCAACAGGTTAACATGGTACCGGGCGAGTTCGTT 196903
||||| |||||| |||||| |||| || || || ||| |||||| ||| |
Sbjct 3811 TACGCGCTGCTGACCCACATGCTGGCCCAGCAATGCGACCTGGAGGTGGGCGACTTCATC 3752
Query 196904 TGGACTGGCGGTGACGTCCACATCTACTCCAATCACATGGAACAGGTAGAAGAACAGCTG 196963
||||| ||||| ||| |||||||||| ||| ||| | ||||| || ||||||
Sbjct 3751 TGGACCGGCGGCGACTGCCACATCTACAACAACCACTTCACCCAGGTCGAGACCCAGCTG 3692
Query 196964 TCTCGTAAACCGAAAGCGTTGCCGACGCTGGTTATCAAACGCAAACCGGACAGTATCTTC 197023
| || | || || | |||||||| ||||| ||| || ||| ||||||
Sbjct 3691 GCGCGCCAGCCCTTCGCCTACCCGACGCTTCAGATCAAGCGCCGGCCCGACTCCATCTTC 3632
Query 197024 GATTACAAATTCGAAGACTTCGAACTGGTAGGCTACGATCCGCATCCGGCGATTAAAGCC 197083
| ||| | | ||| |||||||| | || |||||| | | || | | || || |||
Sbjct 3631 GGCTACGAGTACGAGGACTTCGAGGTCGTCGGCTACCAGCACCACGAGCCCATCAAGGCC 3572
Query 197084 CCGGTGGC 197091
|| |||||
Sbjct 3571 CCCGTGGC 3564
Score = 105 bits (116), Expect = 1e-17
Identities = 169/240 (70%), Gaps = 2/240 (1%)
Strand=Plus/Minus
Query 196124 GACCGTACCGGCACAGGCACTA-CGTCCTATCTCGGCGCACAGATGCGCTTCGATCTGCA 196182
|||||||||||||| ||||| | | | | ||||| |||||||||||||| |||
Sbjct 4294 GACCGTACCGGCACGGGCACGCGCAGCGTGT-TCGGCCACCAGATGCGCTTCGACCTGTC 4236
Query 196183 AGACGGATTCCCGCTGGTCACCACGAAGAAACTCCATCTGCGTTCCATCATTCATGAACT 196242
|| || || |||||||||||||| ||||| | || || |||||||| | |||||
Sbjct 4235 CGAAGGCTTTCCGCTGGTCACCACCAAGAAGGTGCACCTCAAGTCCATCATCCTGGAACT 4176
Query 196243 GCTGTGGTTCCTCAACGGGGACACCAACATCAAGTACCTGAATGACAACGGTGTCTCTAT 196302
|||||||||||| ||| |||| ||| | | ||| | || ||| | | ||
Sbjct 4175 GCTGTGGTTCCTGCGCGGCGACAGCAATGTGCGCTGGCTGCAGGAGCGCGGCTGCACCAT 4116
Query 196303 CTGGAACGAGTGGGCGAACGAACTCGGTAACCTGGGGCCGGTTTACGGTAAGCAGTGGCG 196362
|||| |||| ||||| ||| ||| ||||||| ||||| || || ||| |||||
Sbjct 4115 CTGGGACGAATGGGCCCGCGAGGACGGCGACCTGGGCCCGGTCTATGGCGTGCAATGGCG 4056
>seq11739
Length=237542
Score = 87.8 bits (96), Expect = 3e-12
Identities = 127/177 (72%), Gaps = 2/177 (1%)
Strand=Plus/Minus
Query 196115 GACAAAGCTGACCGTACCGGCACAGGCACTACGTCCTATCTCGGCGCA-CAGATGCGCTT 196173
||||||| ||| ||||| || ||||| ||| ||| || | | | || || ||||| ||
Sbjct 9430 GACAAAGGTGATCGTACTGGTACAGGTACT-CGTTCTGTATTTGGTCATCAAATGCGTTT 9372
Query 196174 CGATCTGCAAGACGGATTCCCGCTGGTCACCACGAAGAAACTCCATCTGCGTTCCATCAT 196233
|| || | | || || ||||| | ||||| || ||| | ||| | || ||||| |
Sbjct 9371 TGACTTGTCAAAAGGGTTTCCGCTACTAACCACTAAAAAAATTCATTTCCGCTCCATTGT 9312
Query 196234 TCATGAACTGCTGTGGTTCCTCAACGGGGACACCAACATCAAGTACCTGAATGACAA 196290
|||||||||||||||||| || || ||||||||| | | || || || |||||
Sbjct 9311 GATTGAACTGCTGTGGTTCCTAAAAGGCGACACCAACGTTCAATATCTTAAAGACAA 9255
>seq646
Length=687
Score = 86.0 bits (94), Expect = 1e-11
Identities = 124/174 (71%), Gaps = 6/174 (3%)
Strand=Plus/Minus
Query 196779 TGTCTTGTCAGCTGTATCAGCGTAGTGCGGATATGTTCCTCGGTGTACCGTTCAACATCG 196838
|||| || ||||| || ||||| |||||| |||||||||| || || ||||||||||
Sbjct 353 TGTCCTGCCAGCTCTACCAGCGCTCGGCGGATGTGTTCCTCGGCGTGCCCTTCAACATCG 294
Query 196839 CGTCTTACGCATTGCTGATTCACATGGTGGCGCAACAGGT---TAACATGGTACCGGGCG 196895
|||| || || |||||| ||||| ||| ||||| | | || || ||||
Sbjct 293 CGTCCTATGCCCTGCTGACCATGATGGTCGCG---CAGGTCACTGGCCTGAAGCCCGGCG 237
Query 196896 AGTTCGTTTGGACTGGCGGTGACGTCCACATCTACTCCAATCACATGGAACAGG 196949
||||||| || |||||||| ||| |||| |||||||| | || ||||
Sbjct 236 AGTTCGTGCATACCCTCGGTGACGCGCACCTCTATTCCAATCATCTCGAGCAGG 183
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 771397166787480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |