Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_031120.1 Length=241147 Score E Sequences producing significant alignments: (Bits) Value seq10734 167 4e-36 seq9538 159 5e-34 seq6415 154 2e-32 seq7053 149 1e-30 seq9470 125 1e-23 seq9639 118 2e-21 seq11739 87.8 3e-12 seq646 86.0 1e-11 >seq10734 Length=9239 Score = 167 bits (184), Expect = 4e-36 Identities = 192/256 (75%), Gaps = 2/256 (1%) Strand=Plus/Plus Query 196108 CGGCCACGACAAAGCTGACCGTACCGGCACAGGCACTA-CGTCCTATCTCGGCGCACAGA 196166 |||| ||| ||| ||| || |||||||| ||||| | | | | | ||| |||| Sbjct 1260 CGGCGCCGAGAAAAGTGATCGCACCGGCACCGGCACCCGCAGCGTGTTT-GGCTGGCAGA 1318 Query 196167 TGCGCTTCGATCTGCAAGACGGATTCCCGCTGGTCACCACGAAGAAACTCCATCTGCGTT 196226 |||| ||| | ||| || || ||||||||||||||||| ||||| || || ||||| | Sbjct 1319 TGCGTTTCAACCTGGCCGAAGGCTTCCCGCTGGTCACCACCAAGAAGCTGCACCTGCGCT 1378 Query 196227 CCATCATTCATGAACTGCTGTGGTTCCTCAACGGGGACACCAACATCAAGTACCTGAATG 196286 | ||||| || || |||||||||||||| || || |||||||||||| |||||||| | Sbjct 1379 CGATCATCCACGAGCTGCTGTGGTTCCTGAAGGGCGACACCAACATCGGCTACCTGAAGG 1438 Query 196287 ACAACGGTGTCTCTATCTGGAACGAGTGGGCGAACGAACTCGGTAACCTGGGGCCGGTTT 196346 ||||| || |||||| |||||||||| |||| || |||| || ||||| | Sbjct 1439 ACAACCAGGTACGGATCTGGGACGAGTGGGCCGACGACAATGGCGACCTCGGCCCGGTCT 1498 Query 196347 ACGGTAAGCAGTGGCG 196362 |||| ||||||||||| Sbjct 1499 ACGGCAAGCAGTGGCG 1514 Score = 104 bits (114), Expect = 4e-17 Identities = 215/315 (68%), Gaps = 14/315 (4%) Strand=Plus/Plus Query 196784 TGTCAGCTGTATCAGCGTAGTGCGGATATGTTCCTCGGTGTACCGTTCAACATCGCGTCT 196843 || |||||||| ||||| || | || || |||||||| || |||||||||||||| Sbjct 1703 TGCCAGCTGTACCAGCGCAGCGGCGACATCTTCCTCGGAGTGCCGTTCAACATCGCCAGC 1762 Query 196844 TACGCATTGCTGATTCACATGGTGGCGCA----ACAGGTTAACATGGTACCGGGCGAGTT 196899 ||||| |||||| |||||||||||||| || || | ||| |||||| || Sbjct 1763 TACGCGCTGCTGACCCACATGGTGGCGCAGGCCACCGG----CCTGGGCGTGGGCGACTT 1818 Query 196900 CGTTTGGACTGGC--GGTGACGTCCACATCTACTCCAATCACATGGAACAGGTAGAAGAA 196957 || || || || || || | ||| | || || || ||| | || |||| || Sbjct 1819 CG--TGCACACGCTGGGCGATGCGCACCTGTATTCGAACCACTTCGAGCAGGCGCGCGAG 1876 Query 196958 CAGCTGTCTCGTAAACCGAAAGCGTTGCCGACGCTGGTTATCAAACGCAAACCGGACAG- 197016 |||||||| ||| ||||| ||| |||||||||| || | ||| | | ||| | Sbjct 1877 CAGCTGTCGCGTGAACCGCGCGCGCTGCCGACGCT-GTGGTTGAACCCGGAGGTGACCGA 1935 Query 197017 TATCTTCGATTACAAATTCGAAGACTTCGAACTGGTAGGCTACGATCCGCATCCGGCGAT 197076 | |||| | | | ||||| ||| || | | |||||||| ||||| ||||| || Sbjct 1936 CCTGTTCGGCTTCCAGTTCGACGACATCCGCATCGACGGCTACGACCCGCACCCGGCCAT 1995 Query 197077 TAAAGCCCCGGTGGC 197091 || || |||||||| Sbjct 1996 CAAGGCGCCGGTGGC 2010 >seq9538 Length=646221 Score = 159 bits (176), Expect = 5e-34 Identities = 181/240 (75%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 196124 GACCGTACCGGCACAGGCACTACGTCCTATCT-CGGCGCACAGATGCGCTTCGATCTGCA 196182 ||||| |||||||| ||||| ||| | | | |||| |||||||| ||||||||| Sbjct 486501 GACCGCACCGGCACCGGCAC-ACGCTCGGTGTTCGGCTATCAGATGCGTTTCGATCTGGC 486559 Query 196183 AGACGGATTCCCGCTGGTCACCACGAAGAAACTCCATCTGCGTTCCATCATTCATGAACT 196242 ||||| |||||| || | ||||| |||||||| || ||| || ||||| || ||||| Sbjct 486560 CGACGGCTTCCCGGTGCTTACCACCAAGAAACTGCACCTGAAGTCGATCATCCACGAACT 486619 Query 196243 GCTGTGGTTCCTCAACGGGGACACCAACATCAAGTACCTGAATGACAACGGTGTCTCTAT 196302 |||||||| || ||| || ||||||||||| || ||||| ||| |||| ||| | || Sbjct 486620 TCTGTGGTTTCTGGCCGGCGATACCAACATCAAATATCTGAACGACCACGGCGTCACCAT 486679 Query 196303 CTGGAACGAGTGGGCGAACGAACTCGGTAACCTGGGGCCGGTTTACGGTAAGCAGTGGCG 196362 |||| ||||||||||| | | || | || || ||||| || || ||||||||||| Sbjct 486680 CTGGGACGAGTGGGCGGATGCCAAGGGCGATCTCGGCCCGGTCTATGGCAAGCAGTGGCG 486739 Score = 86.0 bits (94), Expect = 1e-11 Identities = 153/220 (70%), Gaps = 10/220 (5%) Strand=Plus/Plus Query 196779 TGTCTTGTCAGCTGTATCAGCGTAGTGCGGATATGTTCCTCGGTGTACCGTTCAACATCG 196838 |||| || ||||| || |||||| ||||| || || ||||| || ||||||||||||| Sbjct 486919 TGTCATGCCAGCTCTACCAGCGTTCCGCGGACATCTTTCTCGGCGTGCCGTTCAACATCG 486978 Query 196839 CGTCTTACGCATTGCTGATTCACATGGTGGCGCAACAGGTTA---ACATGGTACCGGGCG 196895 | || || || |||| | ||||||||| ||||| | || ||| |||| Sbjct 486979 CTTCCTATGCGCTGCTCACCATGATGGTGGCG---CAGGTGACGGGGCTGAAACCCGGCG 487035 Query 196896 AGTTCGTTTGGACTGGC--GGTGACGTCCACATCTACTCCAATCACATGGAACAGGTAGA 196953 | |||| || || || ||||||| |||||||| ||||| || | ||||||| Sbjct 487036 ATTTCG--TGCACACGCTGGGTGACGCGCACATCTATTCCAACCATTTCGAACAGGCGCG 487093 Query 196954 AGAACAGCTGTCTCGTAAACCGAAAGCGTTGCCGACGCTG 196993 || ||| || || || |||||| | |||||||| || Sbjct 487094 CGAGCAGTTGCAGCGCAAGCCGAAAACACTGCCGACGATG 487133 >seq6415 Length=247467 Score = 154 bits (170), Expect = 2e-32 Identities = 182/242 (75%), Gaps = 6/242 (2%) Strand=Plus/Plus Query 196124 GACCGTACCGGCACAGGCACTACGTCCTATCTCGGCGCACAGATGCGCTTCGATCTG--C 196181 ||||| || ||||| ||||| | | ||||| ||||| |||||||||||| | Sbjct 52969 GACCGCACGGGCACCGGCACGCTGGGCGTGTTCGGCCGGCAGATCCGCTTCGATCTGGCC 53028 Query 196182 AAGACGGATTCCCGCTGGTCACCACGAAGAAACTCCATCTGCGTTCCATCATTCAT-GAA 196240 ||| || |||||| | | ||| | ||||| || || ||||| || |||| |||| || Sbjct 53029 AAG--GGCTTCCCGGTTCTGACCTCCAAGAAGCTGCACCTGCGCTCGATCA-TCATCGAG 53085 Query 196241 CTGCTGTGGTTCCTCAACGGGGACACCAACATCAAGTACCTGAATGACAACGGTGTCTCT 196300 |||||||||||||| || || |||||||||||| ||||| || |||||||| || Sbjct 53086 CTGCTGTGGTTCCTGAAGGGCGACACCAACATCGCCTACCTCAAGGACAACGGCGTGCGC 53145 Query 196301 ATCTGGAACGAGTGGGCGAACGAACTCGGTAACCTGGGGCCGGTTTACGGTAAGCAGTGG 196360 |||||| |||||||||| ||||| ||| | || || ||||| ||||| ||||||||| Sbjct 53146 ATCTGGGACGAGTGGGCCGACGAAAACGGCGATCTTGGCCCGGTCTACGGCAAGCAGTGG 53205 Query 196361 CG 196362 || Sbjct 53206 CG 53207 >seq7053 Length=464797 Score = 149 bits (164), Expect = 1e-30 Identities = 179/241 (74%), Gaps = 2/241 (1%) Strand=Plus/Minus Query 196124 GACCGTACCGGCACAGGCACTACGTCCTATCT-CGGCGCACAGATGCGCTTCGATCTGCA 196182 ||||| |||||||| || || || | ||| ||| |||||||||||||| || Sbjct 70840 GACCGCACCGGCACGGGTACG-CGCTCGGTCTTCGGTTACCAGATGCGCTTCGACCTTTC 70782 Query 196183 AGACGGATTCCCGCTGGTCACCACGAAGAAACTCCATCTGCGTTCCATCATTCATGAACT 196242 || || || ||| | ||||||| ||||| || |||||||| |||||||| |||||| | Sbjct 70781 CGAAGGTTTTCCGGTTCTCACCACCAAGAAGCTGCATCTGCGCTCCATCATCCATGAATT 70722 Query 196243 GCTGTGGTTCCTCAACGGGGACACCAACATCAAGTACCTGAATGACAACGGTGTCTCTAT 196302 |||||||||||| || || || ||||| ||| || || || || ||||| || || || Sbjct 70721 GCTGTGGTTCCTGAAGGGCGATACCAATATCGCCTATCTCAAGGAAAACGGCGTTTCCAT 70662 Query 196303 CTGGAACGAGTGGGCGAACGAACTCGGTAACCTGGGGCCGGTTTACGGTAAGCAGTGGCG 196362 |||| |||| ||||| |||| ||| | || || ||||| || ||| ||||||||| Sbjct 70661 CTGGGACGAATGGGCCGACGAGAACGGCGATCTCGGCCCGGTCTATGGTGCGCAGTGGCG 70602 Query 196363 T 196363 | Sbjct 70601 T 70601 Score = 89.7 bits (98), Expect = 8e-13 Identities = 125/174 (72%), Gaps = 6/174 (3%) Strand=Plus/Minus Query 196779 TGTCTTGTCAGCTGTATCAGCGTAGTGCGGATATGTTCCTCGGTGTACCGTTCAACATCG 196838 |||| || ||||| |||||||| ||| ||||| |||||||| || ||||||||||||| Sbjct 70422 TGTCCTGCCAGCTCTATCAGCGCTCTGCCGATATCTTCCTCGGCGTGCCGTTCAACATCG 70363 Query 196839 CGTCTTACGCATTGCTGATTCACATGGTGGCGCAACAGGTTA---ACATGGTACCGGGCG 196895 | || || || |||||| | ||||||||| ||||| | | || ||||| | Sbjct 70362 CCTCCTATGCGCTGCTGACACTGATGGTGGCG---CAGGTCACGGGCCTGAAGCCGGGTG 70306 Query 196896 AGTTCGTTTGGACTGGCGGTGACGTCCACATCTACTCCAATCACATGGAACAGG 196949 | |||||| || ||||||| || ||||| ||||||| | || |||| Sbjct 70305 ATTTCGTTCATACGCTGGGTGACGCGCATATCTATGCCAATCATTTCGAGCAGG 70252 >seq9470 Length=127963 Score = 125 bits (138), Expect = 1e-23 Identities = 171/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 196124 GACCGTACCGGCACAGGCACTACGTCCTATCTCGGCGCACAGATGCGCTTCGATCTGCAA 196183 ||||| |||||||| ||||| | | ||||| |||||||||||||| ||| Sbjct 53204 GACCGCACCGGCACCGGCACCCTGGGCGTCTTCGGCCGCCAGATGCGCTTCGACCTGGCG 53145 Query 196184 GACGGATTCCCGCTGGTCACCACGAAGAAACTCCATCTGCGTTCCATCATTCATGAACTG 196243 || || |||||| | ||||| ||||| || || ||||| || ||||| || || Sbjct 53144 CGGGGCTTTCCGCTGCTGACCACCAAGAAGCTGCACCTGCGCTCGATCATCGTCGAGCTT 53085 Query 196244 CTGTGGTTCCTCAACGGGGACACCAACATCAAGTACCTGAATGACAACGGTGTCTCTATC 196303 ||||||||||| ||| || ||||||||| | ||||| |||||||| ||| ||| Sbjct 53084 CTGTGGTTCCTGCGCGGCGAGACCAACATCGCCTGGCTGAAGGACAACGGGGTCAGCATC 53025 Query 196304 TGGAACGAGTGGGCGAACGAACTCGGTAACCTGGGGCCGGTTTACGGTAAGCAGTGGCG 196362 ||| |||| ||||| ||| || | || || ||||| ||||| ||||||||||| Sbjct 53024 TGGGACGAATGGGCCGACGCCGAGGGCGAGCTCGGTCCGGTCTACGGCAAGCAGTGGCG 52966 >seq9639 Length=103419 Score = 118 bits (130), Expect = 2e-21 Identities = 211/308 (69%), Gaps = 0/308 (0%) Strand=Plus/Minus Query 196784 TGTCAGCTGTATCAGCGTAGTGCGGATATGTTCCTCGGTGTACCGTTCAACATCGCGTCT 196843 || |||||||| ||||| || ||||| || ||||| || || || ||||||||||| Sbjct 3871 TGCCAGCTGTACCAGCGCAGCGCGGACATCTTCCTGGGCGTTCCCTTCAACATCGCCAGC 3812 Query 196844 TACGCATTGCTGATTCACATGGTGGCGCAACAGGTTAACATGGTACCGGGCGAGTTCGTT 196903 ||||| |||||| |||||| |||| || || || ||| |||||| ||| | Sbjct 3811 TACGCGCTGCTGACCCACATGCTGGCCCAGCAATGCGACCTGGAGGTGGGCGACTTCATC 3752 Query 196904 TGGACTGGCGGTGACGTCCACATCTACTCCAATCACATGGAACAGGTAGAAGAACAGCTG 196963 ||||| ||||| ||| |||||||||| ||| ||| | ||||| || |||||| Sbjct 3751 TGGACCGGCGGCGACTGCCACATCTACAACAACCACTTCACCCAGGTCGAGACCCAGCTG 3692 Query 196964 TCTCGTAAACCGAAAGCGTTGCCGACGCTGGTTATCAAACGCAAACCGGACAGTATCTTC 197023 | || | || || | |||||||| ||||| ||| || ||| |||||| Sbjct 3691 GCGCGCCAGCCCTTCGCCTACCCGACGCTTCAGATCAAGCGCCGGCCCGACTCCATCTTC 3632 Query 197024 GATTACAAATTCGAAGACTTCGAACTGGTAGGCTACGATCCGCATCCGGCGATTAAAGCC 197083 | ||| | | ||| |||||||| | || |||||| | | || | | || || ||| Sbjct 3631 GGCTACGAGTACGAGGACTTCGAGGTCGTCGGCTACCAGCACCACGAGCCCATCAAGGCC 3572 Query 197084 CCGGTGGC 197091 || ||||| Sbjct 3571 CCCGTGGC 3564 Score = 105 bits (116), Expect = 1e-17 Identities = 169/240 (70%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 196124 GACCGTACCGGCACAGGCACTA-CGTCCTATCTCGGCGCACAGATGCGCTTCGATCTGCA 196182 |||||||||||||| ||||| | | | | ||||| |||||||||||||| ||| Sbjct 4294 GACCGTACCGGCACGGGCACGCGCAGCGTGT-TCGGCCACCAGATGCGCTTCGACCTGTC 4236 Query 196183 AGACGGATTCCCGCTGGTCACCACGAAGAAACTCCATCTGCGTTCCATCATTCATGAACT 196242 || || || |||||||||||||| ||||| | || || |||||||| | ||||| Sbjct 4235 CGAAGGCTTTCCGCTGGTCACCACCAAGAAGGTGCACCTCAAGTCCATCATCCTGGAACT 4176 Query 196243 GCTGTGGTTCCTCAACGGGGACACCAACATCAAGTACCTGAATGACAACGGTGTCTCTAT 196302 |||||||||||| ||| |||| ||| | | ||| | || ||| | | || Sbjct 4175 GCTGTGGTTCCTGCGCGGCGACAGCAATGTGCGCTGGCTGCAGGAGCGCGGCTGCACCAT 4116 Query 196303 CTGGAACGAGTGGGCGAACGAACTCGGTAACCTGGGGCCGGTTTACGGTAAGCAGTGGCG 196362 |||| |||| ||||| ||| ||| ||||||| ||||| || || ||| ||||| Sbjct 4115 CTGGGACGAATGGGCCCGCGAGGACGGCGACCTGGGCCCGGTCTATGGCGTGCAATGGCG 4056 >seq11739 Length=237542 Score = 87.8 bits (96), Expect = 3e-12 Identities = 127/177 (72%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 196115 GACAAAGCTGACCGTACCGGCACAGGCACTACGTCCTATCTCGGCGCA-CAGATGCGCTT 196173 ||||||| ||| ||||| || ||||| ||| ||| || | | | || || ||||| || Sbjct 9430 GACAAAGGTGATCGTACTGGTACAGGTACT-CGTTCTGTATTTGGTCATCAAATGCGTTT 9372 Query 196174 CGATCTGCAAGACGGATTCCCGCTGGTCACCACGAAGAAACTCCATCTGCGTTCCATCAT 196233 || || | | || || ||||| | ||||| || ||| | ||| | || ||||| | Sbjct 9371 TGACTTGTCAAAAGGGTTTCCGCTACTAACCACTAAAAAAATTCATTTCCGCTCCATTGT 9312 Query 196234 TCATGAACTGCTGTGGTTCCTCAACGGGGACACCAACATCAAGTACCTGAATGACAA 196290 |||||||||||||||||| || || ||||||||| | | || || || ||||| Sbjct 9311 GATTGAACTGCTGTGGTTCCTAAAAGGCGACACCAACGTTCAATATCTTAAAGACAA 9255 >seq646 Length=687 Score = 86.0 bits (94), Expect = 1e-11 Identities = 124/174 (71%), Gaps = 6/174 (3%) Strand=Plus/Minus Query 196779 TGTCTTGTCAGCTGTATCAGCGTAGTGCGGATATGTTCCTCGGTGTACCGTTCAACATCG 196838 |||| || ||||| || ||||| |||||| |||||||||| || || |||||||||| Sbjct 353 TGTCCTGCCAGCTCTACCAGCGCTCGGCGGATGTGTTCCTCGGCGTGCCCTTCAACATCG 294 Query 196839 CGTCTTACGCATTGCTGATTCACATGGTGGCGCAACAGGT---TAACATGGTACCGGGCG 196895 |||| || || |||||| ||||| ||| ||||| | | || || |||| Sbjct 293 CGTCCTATGCCCTGCTGACCATGATGGTCGCG---CAGGTCACTGGCCTGAAGCCCGGCG 237 Query 196896 AGTTCGTTTGGACTGGCGGTGACGTCCACATCTACTCCAATCACATGGAACAGG 196949 ||||||| || |||||||| ||| |||| |||||||| | || |||| Sbjct 236 AGTTCGTGCATACCCTCGGTGACGCGCACCTCTATTCCAATCATCTCGAGCAGG 183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 771397166787480