Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_031264.1 Length=46877 Score E Sequences producing significant alignments: (Bits) Value seq9520 123 7e-24 seq6145 96.9 1e-15 seq6714 93.3 1e-14 seq7743 87.8 5e-13 >seq9520 Length=52509 Score = 123 bits (136), Expect = 7e-24 Identities = 249/362 (69%), Gaps = 18/362 (5%) Strand=Plus/Plus Query 43227 GATCTGGATGGCGTGATGGCTGATTTTGATGCCTACTTCCCGGCGCTGTTCGGTGTCGAT 43286 ||||| |||||||| ||||| || || || || || || || ||||| || | || Sbjct 40775 GATCTTGATGGCGTAATGGCCGACTTCGACGCGGCATTTCCCGCTCTGTTTGGCCTGGAC 40834 Query 43287 CACCGCGGGATGGCAGATGACGAGATGTGGGCGACGATCAATGCTAACCCGTCATACTTC 43346 ||||||| | | || || || || ||||||| | ||||| ||||||||| ||| Sbjct 40835 CACCGCGTGCTTGCCGACGATGAAATGTGGGGGCACATCAACAGCCACCCGTCATTTTTC 40894 Query 43347 CGCGACAT---GCCTATGTGTCCAGGCGCAAAAATGTTCTTCGACCGGATTGCATGGCTT 43403 |||||| | ||| ||| | ||| ||| ||||||| || | || || ||| Sbjct 40895 CGCGACCTTCCGCCGATG---CAAGGTGCAGTGGAGTTCTTCCACAGCATC-CACCACTT 40950 Query 43404 GATCC-GATCATTCTCACGGCCTGCCCAAGATCGAATTATGCCCATGTGGCAAGACAGAA 43462 || || | | ||||||||||||||||| | ||||| ||| | | | || | ||||| Sbjct 40951 GAACCCGGTGATTCTCACGGCCTGCCCGAAGTCGAACTATCCGCTCGCAGCCATGCAGAA 41010 Query 43463 GCGGGATTGGGTGAGAGAGCACCTTT---CGACCCGGTGCCATATTCTTCCGGTGATGGG 43519 ||| | ||||| | |||||||| | ||||| |||| | | |||||| | || Sbjct 41011 GCGACAGTGGGTTCGTGAGCACCTGTCAGCGACC---TGCCTGGTGTTGCCGGTGCTTGG 41067 Query 43520 CGGTCGCAATAAGCCGCTGTTCATGCATTCCCGC--GGCGACATCCTGATTGACGACTTC 43577 ||| | | ||||| || |||||||| || || |||||| | ||||| ||||| ||| Sbjct 41068 CGGGAGGCACAAGCCTCTTTTCATGCA--CCAGCCGGGCGACGTTCTGATCGACGATTTC 41125 Query 43578 GA 43579 || Sbjct 41126 GA 41127 >seq6145 Length=2096 Score = 96.9 bits (106), Expect = 1e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 5423 ATGCCGGATGTTGCAGCCAATGCGATCCCGGTCATCTTCGGAGACATGGCGCAGGGCTAT 5482 ||||| ||||| || ||||| || |||| || ||||| ||| | | | |||||||| Sbjct 374 ATGCCCGATGTCGCCGCCAACGCCTGCCCGATCGCGTTCGGCGACTTCGAGAAGGGCTAT 433 Query 5483 CGCATCTTTGATCGCCTCGGAGTTCAGGTTCTCCGCGACCCCTACACCAAGAAGCCTTAC 5542 | ||| | || ||| ||| || | ||| || |||||||| ||| | ||||| || Sbjct 434 CTGATCGTCGACCGCGCCGGCGTGCGGGTGCTGCGCGACCCGTACTCGGCCAAGCCGCAC 493 Query 5543 GTGCTGTTCTACACTCGCAAGCGTGTCGGCGGTGGC 5578 |||||||||||||| |||||| |||||||| ||| Sbjct 494 GTGCTGTTCTACACGACCAAGCGCGTCGGCGGCGGC 529 >seq6714 Length=1758414 Score = 93.3 bits (102), Expect = 1e-14 Identities = 126/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 42488 CCGATTATCGGCTGCGCACAGTTGAAGAAGAATACCTTCACTGATTATCGACCGACGATC 42547 |||||| ||| ||||| ||||||||||| || |||||| | || | | | || || Sbjct 819559 CCGATTGTCGTCTGCGTCCAGTTGAAGAAAAACACCTTCGCGGAAAACAAAGGGCCGCTC 819500 Query 42548 AACGAGAAGTTCTTCCATCAGCTTCTATCCAAAAAGCCGCGGTATTCCGACCTGATTGGA 42607 |||||||||||| | | | || | | ||||| |||||||||||||| || || Sbjct 819499 AACGAGAAGTTCCTTAACGACATTATCCGCCGCAAGCCTCGGTATTCCGACCTCATAGGG 819440 Query 42608 GCGATAGAACGCGACGCCGACCATGTACTGATCCCGTTCCGTCCGGTGGTATTCCT 42663 || | ||||| || ||||| || || | || |||||||| || | ||| ||||| Sbjct 819439 GCAGTCGAACGGGATGCCGATCACGTCATCATGCCGTTCCGGCCCGAGGTTTTCCT 819384 >seq7743 Length=219709 Score = 87.8 bits (96), Expect = 5e-13 Identities = 50/51 (98%), Gaps = 0/51 (0%) Strand=Plus/Plus Query 23822 AAAGATTGGTGGGTGATGTAGGGATCGAACCTACGACCCGCTGATTAAGAG 23872 ||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 134164 AAAGATTGGTGGGTGATGTAGGGCTCGAACCTACGACCCGCTGATTAAGAG 134214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 149857996756962