Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_031264.1
Length=46877
Score E
Sequences producing significant alignments: (Bits) Value
seq9520 123 7e-24
seq6145 96.9 1e-15
seq6714 93.3 1e-14
seq7743 87.8 5e-13
>seq9520
Length=52509
Score = 123 bits (136), Expect = 7e-24
Identities = 249/362 (69%), Gaps = 18/362 (5%)
Strand=Plus/Plus
Query 43227 GATCTGGATGGCGTGATGGCTGATTTTGATGCCTACTTCCCGGCGCTGTTCGGTGTCGAT 43286
||||| |||||||| ||||| || || || || || || || ||||| || | ||
Sbjct 40775 GATCTTGATGGCGTAATGGCCGACTTCGACGCGGCATTTCCCGCTCTGTTTGGCCTGGAC 40834
Query 43287 CACCGCGGGATGGCAGATGACGAGATGTGGGCGACGATCAATGCTAACCCGTCATACTTC 43346
||||||| | | || || || || ||||||| | ||||| ||||||||| |||
Sbjct 40835 CACCGCGTGCTTGCCGACGATGAAATGTGGGGGCACATCAACAGCCACCCGTCATTTTTC 40894
Query 43347 CGCGACAT---GCCTATGTGTCCAGGCGCAAAAATGTTCTTCGACCGGATTGCATGGCTT 43403
|||||| | ||| ||| | ||| ||| ||||||| || | || || |||
Sbjct 40895 CGCGACCTTCCGCCGATG---CAAGGTGCAGTGGAGTTCTTCCACAGCATC-CACCACTT 40950
Query 43404 GATCC-GATCATTCTCACGGCCTGCCCAAGATCGAATTATGCCCATGTGGCAAGACAGAA 43462
|| || | | ||||||||||||||||| | ||||| ||| | | | || | |||||
Sbjct 40951 GAACCCGGTGATTCTCACGGCCTGCCCGAAGTCGAACTATCCGCTCGCAGCCATGCAGAA 41010
Query 43463 GCGGGATTGGGTGAGAGAGCACCTTT---CGACCCGGTGCCATATTCTTCCGGTGATGGG 43519
||| | ||||| | |||||||| | ||||| |||| | | |||||| | ||
Sbjct 41011 GCGACAGTGGGTTCGTGAGCACCTGTCAGCGACC---TGCCTGGTGTTGCCGGTGCTTGG 41067
Query 43520 CGGTCGCAATAAGCCGCTGTTCATGCATTCCCGC--GGCGACATCCTGATTGACGACTTC 43577
||| | | ||||| || |||||||| || || |||||| | ||||| ||||| |||
Sbjct 41068 CGGGAGGCACAAGCCTCTTTTCATGCA--CCAGCCGGGCGACGTTCTGATCGACGATTTC 41125
Query 43578 GA 43579
||
Sbjct 41126 GA 41127
>seq6145
Length=2096
Score = 96.9 bits (106), Expect = 1e-15
Identities = 115/156 (74%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 5423 ATGCCGGATGTTGCAGCCAATGCGATCCCGGTCATCTTCGGAGACATGGCGCAGGGCTAT 5482
||||| ||||| || ||||| || |||| || ||||| ||| | | | ||||||||
Sbjct 374 ATGCCCGATGTCGCCGCCAACGCCTGCCCGATCGCGTTCGGCGACTTCGAGAAGGGCTAT 433
Query 5483 CGCATCTTTGATCGCCTCGGAGTTCAGGTTCTCCGCGACCCCTACACCAAGAAGCCTTAC 5542
| ||| | || ||| ||| || | ||| || |||||||| ||| | ||||| ||
Sbjct 434 CTGATCGTCGACCGCGCCGGCGTGCGGGTGCTGCGCGACCCGTACTCGGCCAAGCCGCAC 493
Query 5543 GTGCTGTTCTACACTCGCAAGCGTGTCGGCGGTGGC 5578
|||||||||||||| |||||| |||||||| |||
Sbjct 494 GTGCTGTTCTACACGACCAAGCGCGTCGGCGGCGGC 529
>seq6714
Length=1758414
Score = 93.3 bits (102), Expect = 1e-14
Identities = 126/176 (72%), Gaps = 0/176 (0%)
Strand=Plus/Minus
Query 42488 CCGATTATCGGCTGCGCACAGTTGAAGAAGAATACCTTCACTGATTATCGACCGACGATC 42547
|||||| ||| ||||| ||||||||||| || |||||| | || | | | || ||
Sbjct 819559 CCGATTGTCGTCTGCGTCCAGTTGAAGAAAAACACCTTCGCGGAAAACAAAGGGCCGCTC 819500
Query 42548 AACGAGAAGTTCTTCCATCAGCTTCTATCCAAAAAGCCGCGGTATTCCGACCTGATTGGA 42607
|||||||||||| | | | || | | ||||| |||||||||||||| || ||
Sbjct 819499 AACGAGAAGTTCCTTAACGACATTATCCGCCGCAAGCCTCGGTATTCCGACCTCATAGGG 819440
Query 42608 GCGATAGAACGCGACGCCGACCATGTACTGATCCCGTTCCGTCCGGTGGTATTCCT 42663
|| | ||||| || ||||| || || | || |||||||| || | ||| |||||
Sbjct 819439 GCAGTCGAACGGGATGCCGATCACGTCATCATGCCGTTCCGGCCCGAGGTTTTCCT 819384
>seq7743
Length=219709
Score = 87.8 bits (96), Expect = 5e-13
Identities = 50/51 (98%), Gaps = 0/51 (0%)
Strand=Plus/Plus
Query 23822 AAAGATTGGTGGGTGATGTAGGGATCGAACCTACGACCCGCTGATTAAGAG 23872
||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 134164 AAAGATTGGTGGGTGATGTAGGGCTCGAACCTACGACCCGCTGATTAAGAG 134214
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 149857996756962
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |