Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_031906.1
Length=198190
Score E
Sequences producing significant alignments: (Bits) Value
seq8237 87.8 2e-12
seq9956 86.0 8e-12
seq7835 86.0 8e-12
>seq8237
Length=506431
Score = 87.8 bits (96), Expect = 2e-12
Identities = 78/95 (82%), Gaps = 6/95 (6%)
Strand=Plus/Minus
Query 165728 CGCA-ATGGAAGAGTGGCAGAGTGGTTGATTGCATCAGTCTTGAAAACTGAC----GTGT 165782
|||| ||||||| ||||||||| |||| | |||| | ||||||||||| ||| ||||
Sbjct 133642 CGCACATGGAAGCGTGGCAGAGCGGTTTAATGCACCGGTCTTGAAAACGGACGAGGGTGT 133583
Query 165783 TAGTAGCACCGTGAGTTCGAATCTCACCTCTTCCG 165817
||| | |||||||||||||||||||| ||||||
Sbjct 133582 GAGT-CCTCCGTGAGTTCGAATCTCACCGCTTCCG 133549
>seq9956
Length=123604
Score = 86.0 bits (94), Expect = 8e-12
Identities = 72/88 (82%), Gaps = 3/88 (3%)
Strand=Plus/Minus
Query 165733 TGGAAGAGTGGCAGAGTGGTTGATTGCATCAGTCTTGAAAACTGACGTG---TTAGTAGC 165789
|||||||||||||||| |||| | ||| ||||||||||||||| || | | | |
Sbjct 93378 TGGAAGAGTGGCAGAGCGGTTTAATGCTACAGTCTTGAAAACTGTCGAGGGTTCACGCCC 93319
Query 165790 ACCGTGAGTTCGAATCTCACCTCTTCCG 165817
|||||||||||||||||||||||||||
Sbjct 93318 TCCGTGAGTTCGAATCTCACCTCTTCCG 93291
Score = 86.0 bits (94), Expect = 8e-12
Identities = 64/75 (85%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 19528 ATTCCTCTATAGCTCAATCGGCAGAGCATCTGACTGTTAATCAGAGGGTTCCTGGTTCGA 19587
||||||| |||||||| |||| |||||| | ||||||||||| | | || ||||||||||
Sbjct 116395 ATTCCTCGATAGCTCAGTCGGTAGAGCAACGGACTGTTAATCCGTGTGTCCCTGGTTCGA 116454
Query 19588 GTCCAGGTGGAGGAG 19602
| |||||| ||||||
Sbjct 116455 GCCCAGGTCGAGGAG 116469
>seq7835
Length=204203
Score = 86.0 bits (94), Expect = 8e-12
Identities = 75/92 (82%), Gaps = 5/92 (5%)
Strand=Plus/Plus
Query 165730 CAATGGAAGAGTGGCAGAGTGGTTGATTGCATCAGTCTTGAAAACTGAC----GTGTTAG 165785
|| |||||| ||||||||| |||| | |||| | ||||||||||| ||| |||| ||
Sbjct 60561 CATTGGAAGCGTGGCAGAGCGGTTTAATGCACCGGTCTTGAAAACCGACGAGGGTGTGAG 60620
Query 165786 TAGCACCGTGAGTTCGAATCTCACCTCTTCCG 165817
| | |||||||||||||||||||| ||||||
Sbjct 60621 T-CCTCCGTGAGTTCGAATCTCACCGCTTCCG 60651
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633960642366000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |