Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq8237 87.8 2e-12 seq9956 86.0 8e-12 seq7835 86.0 8e-12 >seq8237 Length=506431 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/95 (82%), Gaps = 6/95 (6%) Strand=Plus/Minus Query 165728 CGCA-ATGGAAGAGTGGCAGAGTGGTTGATTGCATCAGTCTTGAAAACTGAC----GTGT 165782 |||| ||||||| ||||||||| |||| | |||| | ||||||||||| ||| |||| Sbjct 133642 CGCACATGGAAGCGTGGCAGAGCGGTTTAATGCACCGGTCTTGAAAACGGACGAGGGTGT 133583 Query 165783 TAGTAGCACCGTGAGTTCGAATCTCACCTCTTCCG 165817 ||| | |||||||||||||||||||| |||||| Sbjct 133582 GAGT-CCTCCGTGAGTTCGAATCTCACCGCTTCCG 133549 >seq9956 Length=123604 Score = 86.0 bits (94), Expect = 8e-12 Identities = 72/88 (82%), Gaps = 3/88 (3%) Strand=Plus/Minus Query 165733 TGGAAGAGTGGCAGAGTGGTTGATTGCATCAGTCTTGAAAACTGACGTG---TTAGTAGC 165789 |||||||||||||||| |||| | ||| ||||||||||||||| || | | | | Sbjct 93378 TGGAAGAGTGGCAGAGCGGTTTAATGCTACAGTCTTGAAAACTGTCGAGGGTTCACGCCC 93319 Query 165790 ACCGTGAGTTCGAATCTCACCTCTTCCG 165817 ||||||||||||||||||||||||||| Sbjct 93318 TCCGTGAGTTCGAATCTCACCTCTTCCG 93291 Score = 86.0 bits (94), Expect = 8e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 19528 ATTCCTCTATAGCTCAATCGGCAGAGCATCTGACTGTTAATCAGAGGGTTCCTGGTTCGA 19587 ||||||| |||||||| |||| |||||| | ||||||||||| | | || |||||||||| Sbjct 116395 ATTCCTCGATAGCTCAGTCGGTAGAGCAACGGACTGTTAATCCGTGTGTCCCTGGTTCGA 116454 Query 19588 GTCCAGGTGGAGGAG 19602 | |||||| |||||| Sbjct 116455 GCCCAGGTCGAGGAG 116469 >seq7835 Length=204203 Score = 86.0 bits (94), Expect = 8e-12 Identities = 75/92 (82%), Gaps = 5/92 (5%) Strand=Plus/Plus Query 165730 CAATGGAAGAGTGGCAGAGTGGTTGATTGCATCAGTCTTGAAAACTGAC----GTGTTAG 165785 || |||||| ||||||||| |||| | |||| | ||||||||||| ||| |||| || Sbjct 60561 CATTGGAAGCGTGGCAGAGCGGTTTAATGCACCGGTCTTGAAAACCGACGAGGGTGTGAG 60620 Query 165786 TAGCACCGTGAGTTCGAATCTCACCTCTTCCG 165817 | | |||||||||||||||||||| |||||| Sbjct 60621 T-CCTCCGTGAGTTCGAATCTCACCGCTTCCG 60651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633960642366000