Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_031917.1 Length=39949 Score E Sequences producing significant alignments: (Bits) Value seq7305 149 2e-31 >seq7305 Length=28244 Score = 149 bits (164), Expect = 2e-31 Identities = 165/214 (77%), Gaps = 6/214 (3%) Strand=Plus/Minus Query 38658 GTTTCAACATCATATCGTGGTGATACCCTGCAATCATTGCACGTTTCTGAGTTTGGCAAG 38717 |||||||| |||| ||||||| || || | ||||| ||||| || ||||| ||| Sbjct 22583 GTTTCAACTTCATTCCGTGGTGGAACGCTATACAGCTTGCATGTTTCAGAATTTGGGAAG 22524 Query 38718 ATATGTAAAAAGTATCCCGATAAAGCAAAAGAGATTGTTACTGGTGCATTTGAAGCTGTA 38777 || ||| |||| |||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 22523 ATTTGTGCAAAGCATCCTGATAAAGCAAAAGAGATTGTTACTGGTGCATTTGAAGCTGT- 22465 Query 38778 CCCGCTGATGGTGGTGTAATTACCCTTGAGTCTACCGCGGAGGGTAAAGAG-GGTTATTT 38836 || || ||||||| ||||| ||||| ||| || || || | || |||||||| Sbjct 22464 TCCACT--TGGTGGTCGGATTACTCTTGAAAGTACTGCAGAAGG-ACGCAGTGGTTATTT 22408 Query 38837 CTATAAGTACAGCGAAGAAGCTAGAAAACTTAAA 38870 |||| | || || |||| ||| ||||| ||||| Sbjct 22407 CTATCAATATTGCCAAGACGCT-GAAAAGTTAAA 22375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127692361249538