Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_031922.1 Length=174830 Score E Sequences producing significant alignments: (Bits) Value seq9429 152 6e-32 >seq9429 Length=202388 Score = 152 bits (168), Expect = 6e-32 Identities = 296/432 (69%), Gaps = 19/432 (4%) Strand=Plus/Plus Query 146805 GCTTTGATGAAGTCTATCAATTTGCTGCAGACATGGGTGGCGCAGGTTACATCTTTACTG 146864 ||||||| || || ||||| | || || || ||||| || || ||||| || ||||| | Sbjct 3103 GCTTTGACGAGGTTTATCAGCTCGCAGCGGATATGGGCGGTGCCGGTTATATTTTTACCG 3162 Query 146865 ATGAACACTCTGCAGACATCATGCATAATTCTGCCACAATCAATCTAAATCTTTTGGATG 146924 |||||| || ||||| |||||||| ||||| || || || || ||| | || | Sbjct 3163 GCGAACACGACGCCGACATAATGCATAACTCTGCGACGATTAACCTCAATATCGCTGACG 3222 Query 146925 CGATTGTGAAGACCAAAGGTATGGGACGTAAAGTTCCTAAGATTTTCTATTCATCTTCTG 146984 ||| | ||| |||||| | ||| |||||||||| || || | Sbjct 3223 ---TTGCCAG----AAA--------ACGTAATATCAAAAAGGTTTTCTATTCGTCGTCCG 3267 Query 146985 CTTGCATTTATCCTTC-TACAATCCAAGAAGATACGGATAATCCTGGTTTGC-GTGAAGA 147042 | ||||| ||||| | || |||| | ||||| | |||||||| | |||| ||||||| Sbjct 3268 CCTGCATGTATCCAGCGTATAATC-AGGAAGACCCAGATAATCC-GAATTGCAGTGAAGA 3325 Query 147043 GTATGCATATCCAGCTAACCCAGACTCTGAATATGGATGGGAAAAACTTTTCTCTGAAAG 147102 || || ||||| || || |||||||||||||| |||||||| || ||||| || | Sbjct 3326 GTCGGCTTATCCCGCAGCGCCTGACTCTGAATATGGTTGGGAAAAGCTGTTCTCGGAGCG 3385 Query 147103 ACTTTATCTTGCATACGGGCGTAACTACAATCTGGATATTAGGATTGCTCGTTACCATAA 147162 | ||||| || || || |||||| ||| | || | ||| | || ||||| Sbjct 3386 TTTGTATCTCGCTTATAACCGCAACTACGGCATGGCGAACCGGGTGGCTAGATATCATAA 3445 Query 147163 CATTTATGGACCTGAAGGAACCTGGGACGGTGGAAAGGAGAAAGCTCCCGCAGCTATGTG 147222 |||| ||| || || || || ||| | || ||||| || || |||||||| || | || Sbjct 3446 TATTTTTGGCCCAGAGGGGACGTGGCAGGGCGGAAAAGAAAAGGCTCCCGCGGCAGTCTG 3505 Query 147223 TCGAAAGGTTGC 147234 || ||||| || Sbjct 3506 CCGTAAGGTGGC 3517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559222713495600