Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_031927.1 Length=216121 Score E Sequences producing significant alignments: (Bits) Value seq2172 145 1e-29 seq13534 87.8 2e-12 seq9910 87.8 2e-12 seq8424 87.8 2e-12 seq7320 87.8 2e-12 seq7282 86.0 9e-12 >seq2172 Length=1301 Score = 145 bits (160), Expect = 1e-29 Identities = 362/550 (66%), Gaps = 10/550 (2%) Strand=Plus/Minus Query 162304 GTTCAACCAGATGAAATATATAACCTAGGGGCTCAGAGTCACGTTAAGGTTTCATTTGAT 162363 || || || || || || || || || | ||| ||||| || || ||| || || || Sbjct 1024 GTGCAGCCGGACGAGATCTACAATCTCGCGGCGCAGAGCCATGTCGCGGTGTCGTTCGAG 965 Query 162364 CAGCCTGAATACACAGCACAGACCGACGCATTGGGCACTCTAAGGGTGCTAGAAGCCGTC 162423 |||| |||||||| || | |||| || |||| | || | |||| || || || Sbjct 964 GAGCCGGAATACACCGCCAATTCCGATGCGCTGGGACCGCTGCGCCTGCTGGAGGCGATC 905 Query 162424 CGTCTTCTTGGTATGGAATCATACGTAAGAA-----TCTACCAAGCGAGCACCAGTGAGC 162478 || |||| || |||| || |||| |||| || ||| ||| || | Sbjct 904 CGGATTCTCGGGCTGGAG-----CGCAAGACGCGGTTCTATCAGGCGTCGACCTCCGAAC 850 Query 162479 TTTATGGGCTAGTTCAGGAGACACCCCAGAAAGAAACCACTCCAATGTATCCACGATCCC 162538 | || || || || |||||| || ||||| || || || || | ||||| || || | Sbjct 849 TGTACGGCCTCGTGCAGGAGGTGCCGCAGAAGGAGACGACGCCGTTCTATCCGCGCTCGC 790 Query 162539 CTTATGGAGTTGCTAAACTATATGGGTTCTGGATCATCAAAAACTACAGGGAAAGCTATG 162598 | |||| || || || || || | | |||||||| ||||| | || ||| | Sbjct 789 CCTATGCGGTCGCCAAGCTCTACGCCTACTGGATCACGGTGAACTATCGTGAGGCCTACG 730 Query 162599 ACATACATGCCTCTAGCGGTATTCTATTCAATCACGAAAGCTCACGCAGAGGAGAGACGT 162658 ||| |||||| | ||| || || ||||| |||||| | | | || ||||| | Sbjct 729 GCATCTATGCCTGCAACGGCATCCTGTTCAACCACGAATCCCCGGTGCGCGGCGAGACCT 670 Query 162659 TCGTCACACGCAAGATCGTCCGAGCCTTGTCCCGAATTAGTGTGGGACTCCAAAGTGATC 162718 |||| || ||||||||| || || || | || || | | || || || | | Sbjct 669 TCGTGACGCGCAAGATCACGCGGGCGCTGGCGCGCATCAAGCTCGGCCTGCAGGACAAGC 610 Query 162719 TACAACTTGGAAACCTCAATGCCCGACGTGACTGGGGACACGCCAAAGACTACGTAGAGG 162778 | | || || |||||||||||||| || |||||||| |||||| ||||| || ||| Sbjct 609 TCTATCTCGGCAACCTCAATGCCCGCCGCGACTGGGGCCACGCCCGCGACTATGTCGAGA 550 Query 162779 CTATGTGGTTGATGCTTCAGCAAGAGAAGCCAGATGATTATGTGATCGCAACTGGTGAGC 162838 |||| ||||||| ||||| || || || || ||||||||||| || || |||| Sbjct 549 TGCAGTGGCTGATGCTGCAGCAGGACGCCCCCGAGGACTATGTGATCGCCACCGGCGAGC 490 Query 162839 AGTATTCTGT 162848 || |||| || Sbjct 489 AGCATTCGGT 480 >seq13534 Length=1158 Score = 87.8 bits (96), Expect = 2e-12 Identities = 129/181 (71%), Gaps = 4/181 (2%) Strand=Plus/Plus Query 162649 GGAGAGACGTTCGTCACACGCAAGATCGTCCGAGCCTTGTCCCGAATTAGTGTGGGACTC 162708 || || || |||||||| ||||||||| ||| || || |||| || | |||||||| Sbjct 22 GGCGAAACCTTCGTCACCCGCAAGATCACCCGCGCACTGGCCCGCATCAAGCTGGGACTC 81 Query 162709 CA--AAGTGATCTACAACTTGGAAACCTCAATGCCCGACGTGACTGGGGACACGCCAAAG 162766 || | | ||||| || || ||||| | || ||||||||||| || ||| | Sbjct 82 CAGGACGCACTCTAC--CTGGGCAACCTGGACGCAAAGCGTGACTGGGGCCATGCCCGTG 139 Query 162767 ACTACGTAGAGGCTATGTGGTTGATGCTTCAGCAAGAGAAGCCAGATGATTATGTGATCG 162826 ||||||| || |||| ||||||| ||||||||| |||| || || | ||||||| Sbjct 140 ACTACGTGGAAATGCAGTGGCTGATGCTGCAGCAAGAGCAGCCCGAAGACTTCGTGATCG 199 Query 162827 C 162827 | Sbjct 200 C 200 >seq9910 Length=308115 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 142792 CGGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAACGGTTCGAG 142851 ||||| |||||||||| ||| ||||| ||||||||||||||||| ||| |||||||| Sbjct 259605 CGGGGGATTAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGGGGTCGTCGGTTCGAT 259546 Query 142852 TCCGTTATTCTCCACCAACCATTGCT 142877 |||| || ||||||||| | || || Sbjct 259545 CCCGTCATCCTCCACCAAGCTTTCCT 259520 >seq8424 Length=263062 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 142800 TAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAACGGTTCGAGTCCGTTAT 142859 |||||||| ||| |||||||||||||||||||||||||||| |||||||| |||| Sbjct 262533 TAGCTCAGCTGGGAGAGCGCCTGCTTTGCAAGCAGGATGTCGTCGGTTCGATCCCGTCCG 262474 Query 142860 TCTCCACCAACCATTG 142875 ||||||||||| ||| Sbjct 262473 GCTCCACCAACCTTTG 262458 >seq7320 Length=4144 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 142793 GGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAACGGTTCGAGT 142852 |||| |||||||||| ||| ||||| ||||||||||||||||| ||| |||||||| Sbjct 1268 GGGGGATTAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGGGGTCGTCGGTTCGATC 1327 Query 142853 CCGTTATTCTCCACCAACCATTG 142875 |||| || ||||||||| | ||| Sbjct 1328 CCGTCATCCTCCACCAAGCTTTG 1350 >seq7282 Length=3089 Score = 86.0 bits (94), Expect = 9e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 142790 TTCGGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAACGGTTCG 142849 || |||| |||||||||| ||| ||||| ||||||||||||||||| ||| ||||||| Sbjct 2455 TTTGGGGGATTAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGGGGTCGTCGGTTCG 2514 Query 142850 AGTCCGTTATTCTCCACCAA 142869 | |||| || ||||||||| Sbjct 2515 ATCCCGTCATCCTCCACCAA 2534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 691329041448840