Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_031927.1
Length=216121
Score E
Sequences producing significant alignments: (Bits) Value
seq2172 145 1e-29
seq13534 87.8 2e-12
seq9910 87.8 2e-12
seq8424 87.8 2e-12
seq7320 87.8 2e-12
seq7282 86.0 9e-12
>seq2172
Length=1301
Score = 145 bits (160), Expect = 1e-29
Identities = 362/550 (66%), Gaps = 10/550 (2%)
Strand=Plus/Minus
Query 162304 GTTCAACCAGATGAAATATATAACCTAGGGGCTCAGAGTCACGTTAAGGTTTCATTTGAT 162363
|| || || || || || || || || | ||| ||||| || || ||| || || ||
Sbjct 1024 GTGCAGCCGGACGAGATCTACAATCTCGCGGCGCAGAGCCATGTCGCGGTGTCGTTCGAG 965
Query 162364 CAGCCTGAATACACAGCACAGACCGACGCATTGGGCACTCTAAGGGTGCTAGAAGCCGTC 162423
|||| |||||||| || | |||| || |||| | || | |||| || || ||
Sbjct 964 GAGCCGGAATACACCGCCAATTCCGATGCGCTGGGACCGCTGCGCCTGCTGGAGGCGATC 905
Query 162424 CGTCTTCTTGGTATGGAATCATACGTAAGAA-----TCTACCAAGCGAGCACCAGTGAGC 162478
|| |||| || |||| || |||| |||| || ||| ||| || |
Sbjct 904 CGGATTCTCGGGCTGGAG-----CGCAAGACGCGGTTCTATCAGGCGTCGACCTCCGAAC 850
Query 162479 TTTATGGGCTAGTTCAGGAGACACCCCAGAAAGAAACCACTCCAATGTATCCACGATCCC 162538
| || || || || |||||| || ||||| || || || || | ||||| || || |
Sbjct 849 TGTACGGCCTCGTGCAGGAGGTGCCGCAGAAGGAGACGACGCCGTTCTATCCGCGCTCGC 790
Query 162539 CTTATGGAGTTGCTAAACTATATGGGTTCTGGATCATCAAAAACTACAGGGAAAGCTATG 162598
| |||| || || || || || | | |||||||| ||||| | || ||| |
Sbjct 789 CCTATGCGGTCGCCAAGCTCTACGCCTACTGGATCACGGTGAACTATCGTGAGGCCTACG 730
Query 162599 ACATACATGCCTCTAGCGGTATTCTATTCAATCACGAAAGCTCACGCAGAGGAGAGACGT 162658
||| |||||| | ||| || || ||||| |||||| | | | || ||||| |
Sbjct 729 GCATCTATGCCTGCAACGGCATCCTGTTCAACCACGAATCCCCGGTGCGCGGCGAGACCT 670
Query 162659 TCGTCACACGCAAGATCGTCCGAGCCTTGTCCCGAATTAGTGTGGGACTCCAAAGTGATC 162718
|||| || ||||||||| || || || | || || | | || || || | |
Sbjct 669 TCGTGACGCGCAAGATCACGCGGGCGCTGGCGCGCATCAAGCTCGGCCTGCAGGACAAGC 610
Query 162719 TACAACTTGGAAACCTCAATGCCCGACGTGACTGGGGACACGCCAAAGACTACGTAGAGG 162778
| | || || |||||||||||||| || |||||||| |||||| ||||| || |||
Sbjct 609 TCTATCTCGGCAACCTCAATGCCCGCCGCGACTGGGGCCACGCCCGCGACTATGTCGAGA 550
Query 162779 CTATGTGGTTGATGCTTCAGCAAGAGAAGCCAGATGATTATGTGATCGCAACTGGTGAGC 162838
|||| ||||||| ||||| || || || || ||||||||||| || || ||||
Sbjct 549 TGCAGTGGCTGATGCTGCAGCAGGACGCCCCCGAGGACTATGTGATCGCCACCGGCGAGC 490
Query 162839 AGTATTCTGT 162848
|| |||| ||
Sbjct 489 AGCATTCGGT 480
>seq13534
Length=1158
Score = 87.8 bits (96), Expect = 2e-12
Identities = 129/181 (71%), Gaps = 4/181 (2%)
Strand=Plus/Plus
Query 162649 GGAGAGACGTTCGTCACACGCAAGATCGTCCGAGCCTTGTCCCGAATTAGTGTGGGACTC 162708
|| || || |||||||| ||||||||| ||| || || |||| || | ||||||||
Sbjct 22 GGCGAAACCTTCGTCACCCGCAAGATCACCCGCGCACTGGCCCGCATCAAGCTGGGACTC 81
Query 162709 CA--AAGTGATCTACAACTTGGAAACCTCAATGCCCGACGTGACTGGGGACACGCCAAAG 162766
|| | | ||||| || || ||||| | || ||||||||||| || ||| |
Sbjct 82 CAGGACGCACTCTAC--CTGGGCAACCTGGACGCAAAGCGTGACTGGGGCCATGCCCGTG 139
Query 162767 ACTACGTAGAGGCTATGTGGTTGATGCTTCAGCAAGAGAAGCCAGATGATTATGTGATCG 162826
||||||| || |||| ||||||| ||||||||| |||| || || | |||||||
Sbjct 140 ACTACGTGGAAATGCAGTGGCTGATGCTGCAGCAAGAGCAGCCCGAAGACTTCGTGATCG 199
Query 162827 C 162827
|
Sbjct 200 C 200
>seq9910
Length=308115
Score = 87.8 bits (96), Expect = 2e-12
Identities = 71/86 (83%), Gaps = 0/86 (0%)
Strand=Plus/Minus
Query 142792 CGGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAACGGTTCGAG 142851
||||| |||||||||| ||| ||||| ||||||||||||||||| ||| ||||||||
Sbjct 259605 CGGGGGATTAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGGGGTCGTCGGTTCGAT 259546
Query 142852 TCCGTTATTCTCCACCAACCATTGCT 142877
|||| || ||||||||| | || ||
Sbjct 259545 CCCGTCATCCTCCACCAAGCTTTCCT 259520
>seq8424
Length=263062
Score = 87.8 bits (96), Expect = 2e-12
Identities = 65/76 (86%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 142800 TAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAACGGTTCGAGTCCGTTAT 142859
|||||||| ||| |||||||||||||||||||||||||||| |||||||| ||||
Sbjct 262533 TAGCTCAGCTGGGAGAGCGCCTGCTTTGCAAGCAGGATGTCGTCGGTTCGATCCCGTCCG 262474
Query 142860 TCTCCACCAACCATTG 142875
||||||||||| |||
Sbjct 262473 GCTCCACCAACCTTTG 262458
>seq7320
Length=4144
Score = 87.8 bits (96), Expect = 2e-12
Identities = 69/83 (83%), Gaps = 0/83 (0%)
Strand=Plus/Plus
Query 142793 GGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAACGGTTCGAGT 142852
|||| |||||||||| ||| ||||| ||||||||||||||||| ||| ||||||||
Sbjct 1268 GGGGGATTAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGGGGTCGTCGGTTCGATC 1327
Query 142853 CCGTTATTCTCCACCAACCATTG 142875
|||| || ||||||||| | |||
Sbjct 1328 CCGTCATCCTCCACCAAGCTTTG 1350
>seq7282
Length=3089
Score = 86.0 bits (94), Expect = 9e-12
Identities = 67/80 (84%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 142790 TTCGGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAACGGTTCG 142849
|| |||| |||||||||| ||| ||||| ||||||||||||||||| ||| |||||||
Sbjct 2455 TTTGGGGGATTAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGGGGTCGTCGGTTCG 2514
Query 142850 AGTCCGTTATTCTCCACCAA 142869
| |||| || |||||||||
Sbjct 2515 ATCCCGTCATCCTCCACCAA 2534
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 691329041448840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |