Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_031940.1 Length=77375 Score E Sequences producing significant alignments: (Bits) Value seq7304 150 9e-32 >seq7304 Length=19908 Score = 150 bits (166), Expect = 9e-32 Identities = 545/834 (65%), Gaps = 28/834 (3%) Strand=Plus/Minus Query 38617 TGTTGCCACACACCAAGGGGGAGTGGGCATTCAAACGGATGCCCATCACGCTGGAGCCGT 38676 ||||||| ||||| || || ||||||||| | ||| | ||| | | || ||||| | Sbjct 14382 TGTTGCCCCACACAAAAGGTGAGTGGGCAATGAAAAGAATGAAGCTAAGACTAGAGCCTT 14323 Query 38677 GGCAGCTCTTTGTGATCTGCT-GCGCGTTTGGCTGGGTCAATAAA--GGCTCCCGGCTGC 38733 ||||| |||| || |||| | | || |||||||| |||| || | || | Sbjct 14322 GGCAGAAATTTGGAAT-TGCTTGTACTTTCGGCTGGGTTCGTAAAAAGGATG--GGTACC 14266 Query 38734 GCCGCTTCCGGGAGGTGTATACCGAAATCCCCCGTAAGAACGGCAAATCGGCAATCTCTG 38793 | || ||| ||||| ||| ||||| || ||||| || || || || ||||| | | Sbjct 14265 GTCGATTCAGGGAGTCTTATTGGGAAATTCCTCGTAAAAATGGTAAGTCAGCAATTGCAG 14206 Query 38794 CCGGTGTTGCCCTGTATTGTTTTGCCTGTGATAACGAGTTTGGCGCGGAAGTGTATTCCG 38853 | |||||||| || || ||||| |||| || | ||| || || || | | Sbjct 14205 CTGGTGTTGCTCTCAATATGTTTGCTAATGATGGTGAATCGGGCAGCGAGGTTTACGCTG 14146 Query 38854 GTGCCACGACAGAGAAACAGGCGTGGGAAGTCTTTCGCCCGGCGCGACTGATGTGTAAAC 38913 |||| || || || ||||| || |||||||| ||| || || ||| | ||| | Sbjct 14145 GTGCGACCACCGAAAAACAAGCATGGGAAGTATTTAAACCAGCTCGATTAATGGCAGTGC 14086 Query 38914 GCACACCCA----TGCTGACGGAAGCGTTCGGGATTGAGGTTAACGCCT-CAAACATGAA 38968 | |||| || ||| || ||| || || || | || || || | |||| Sbjct 14085 GTTCACCTGATTTTGTTGA-GGCAGCT---GGAATACAGATAAATGCTGGCAGTCTTGAA 14030 Query 38969 CCGTCCGGAGGATGGCGCGCGGTTTGAACCGCTGATCGGTAACCCCGGTGATGGTTCATC 39028 || || |||||| | |||||| | | | || | || |||||| || Sbjct 14029 ATA-CCTGAAGATGGCTCATTATTTGAAACTATTGTAGGCGATCCGCCTGATGGACAGTC 13971 Query 39029 ACCCCACTGTGCTGTGGTGGATGAATATCACGAGCATGCCACAGATGCACTTTACACCAC 39088 ||| || ||||| | | |||||||||||||||||| ||| |||||| ||| ||| Sbjct 13970 ACCGCATTGTGCAATTATTGATGAATATCACGAGCATCAAACAAATGCACAGTACGACAC 13911 Query 39089 GATGCTTACCGGGATGGGCGCGCGACGTCAGCCACTGATGTGGGCCATCACCACCGCCGG 39148 |||| || || ||||| ||||| ||||||||| |||||| | || || || | || Sbjct 13910 TATGCAAACGGGTATGGGGGCGCGTCGTCAGCCATTGATGTTTGTTATTACAACATCAGG 13851 Query 39149 GTACAACATTGAGGGGCCGTGCTACGACAAGCG-GCGGGAAGTCATCGAGATGCTCAACG 39207 | ||| ||||| || || || ||||| ||| | | ||| || ||| | | Sbjct 13850 TTTCAATATTGATGGTCCTTGTCACGACTTGCGTTTACGTATTCA-AGACATGTTGCTTG 13792 Query 39208 GCTCGGTGCCTAACGATGAACTGTTCGGGATCATCTATACCGTTGATGAAGGTGACGACT 39267 | | ||||| | ||||| ||||| || |||| ||| ||||||| ||||| || | Sbjct 13791 GTACAGTGCCAGATGATGAGCTGTTTGGATATATCTGGACCATTGATGAGGGTGATGAGT 13732 Query 39268 GGACCGACCCGCAGGTGCTGGAAAAAGCCAATCCAAATATTGGCGTGTCGGTTTATCGCG 39327 |||| || || |||| | | || |||||||||||| | || || |||||| ||| Sbjct 13731 GGACAGATCCTAAGGTATTAGCCAAGGCCAATCCAAATTACGATGTTTCTGTTTATGGCG 13672 Query 39328 AATTTTTGTTAAGTCAGCAGCAGCGT---GCGAAAAATAACGCCCGTCT-GGCAAACGTC 39383 | || || ||||| ||||| ||| || | |||||| || ||| | |||| | Sbjct 13671 A--TTACCTTGAGTCA-CAGCAACGTAAGGCAATAAATAA--TCCATCTCGTCAAAATAC 13617 Query 39384 -TTTAAAACAAAACACCTCAATATCTGGGTGTCGGCGCGTTCGGCGTATTTCAA 39436 || || || || || | || || ||||| || |||||| | ||| ||||| Sbjct 13616 ATTCAAGACTAAGCATTTAAACATTTGGGTTTCTGCGCGTGAGCAGTACTTCAA 13563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 247429780489864