Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physeter_20catodon_20[refseq_20GCF_5F000472045.1_202013-09-30] 11,711 sequences; 2,280,727,784 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq2192 98.7 2e-18 seq11543 95.1 2e-17 seq2118 93.3 7e-17 >seq2192 Length=273845 Score = 98.7 bits (108), Expect = 2e-18 Identities = 92/116 (79%), Gaps = 7/116 (6%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | | ||||| |||| ||| ||||||||||||||||| ||||| | Sbjct 244611 CTAGTTAGCATGCCAGAGTCTCATTCGGTATAGGAATTAACCAGACAAACGTTTCCACTA 244670 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGT 257 | |||||| ||||| |||||||| |||||||||||||||||||||| |||| Sbjct 244671 ATTAAGAA------TGCAC-ACCACCCACAGAATCAAGAAAGAGCTATCAACCTGT 244719 >seq11543 Length=868531 Score = 95.1 bits (104), Expect = 2e-17 Identities = 83/101 (82%), Gaps = 2/101 (2%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 |||||||||||| ||||| ||| | |||||||||| |||||||||||||||||| || Sbjct 156981 GTCAGTGTAGCGTGCGTGTAGCCATGGACATCTAAGGTAATCACAGACCTGTTATTG-CT 156923 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115 ||| | || |||||| | |||| | |||||||||||||| Sbjct 156922 CAATC-TCGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAG 156883 >seq2118 Length=284119 Score = 93.3 bits (102), Expect = 7e-17 Identities = 84/103 (82%), Gaps = 2/103 (2%) Strand=Plus/Plus Query 13 CCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 72 ||| ||||||| | |||||| |||| ||||| ||||||||||| |||||||||||||| Sbjct 251948 CCGCCAGTGTATCTTGCGTGCAGCCCCGAACAGCTAAGGGCATCGCAGACCTGTTATTG- 252006 Query 73 CTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115 ||||| | || |||||| | |||| | |||| ||||||||| Sbjct 252007 CTCAATC-TCGGGTGGCTGAATGCCACTTGTCCTTCTAAGAAG 252048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796709602791