Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physeter_20catodon_20[refseq_20GCF_5F000472045.1_202013-09-30] 11,711 sequences; 2,280,727,784 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq1197 176 8e-42 seq4902 116 6e-24 seq6807 104 4e-20 seq11566 95.1 2e-17 >seq1197 Length=403637 Score = 176 bits (194), Expect = 8e-42 Identities = 206/275 (75%), Gaps = 15/275 (5%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||||||||| ||||| |||||||||| ||||| || ||||||||||||||||| Sbjct 354689 TCATCAGTAGGGTGAAACTCACCTGTCTCACGACGGAGAAATCCCAGCTCACGTTCCCTG 354630 Query 91 TTAGTGGGTGAACAATCCAACGCTT----ACCGAATTCTGCTTCGGT-----ATGATAGG 141 |||||||||||||||||||| |||| | | || ||||| ||| |||||||| Sbjct 354629 TTAGTGGGTGAACAATCCAATGCTTGGTAAACCAA---TGCTT-GGTAAACAATGATAGG 354574 Query 142 AAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGC 201 ||||||| | | ||||| ||||||| | |||||||||| |||| | ||||||| Sbjct 354573 AAGAGCCAATGGCAAAGGACGGAAAAGCAGCATCGCTATGAATGCTTCGTCACCACAAGT 354514 Query 202 CAGTTA--TCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAA 259 |||||| | || ||| |||||||||| |||||| | | ||| | | || | | Sbjct 354513 CAGTTATGTAGCTCTGGGAACTTTTCTGACACCTCCTACTTAAAACTCAAAAGGTCAGGA 354454 Query 260 GGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 ||| | ||||| |||||||| || |||||||| Sbjct 354453 GGACTGTGAGGCCCCACTTTCACAGTCTGTATTCA 354419 >seq4902 Length=121106 Score = 116 bits (128), Expect = 6e-24 Identities = 148/198 (75%), Gaps = 8/198 (4%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||| ||||||||| | ||||| | || || | |||| ||||| ||| || Sbjct 7377 TCATCAGTCAGGTAAAACTGTTTTATCTCACAATGGCCTGATCCCACCTCACATTCT-TA 7435 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||| | ||||||||||||| || | |||||||| || || ||||||| || Sbjct 7436 TTAGTAGTTGAACAATCCAACACTGGGTAAGGTCTGCTTC---ATAAT--GAAGAGCTGA 7490 Query 151 CATCGAAGGATCAAAAAGCA-ACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209 ||| ||||| ||||||| | || ||||||||| |||||| |||| |||||||| Sbjct 7491 TATCTAAGGACTGAAAAGCAGAAGT-GCTATGAACACTTGGCCAACACATTGCAGTTATC 7549 Query 210 CCTGTGGTAACTTTTCTG 227 | |||||||||||||||| Sbjct 7550 CTTGTGGTAACTTTTCTG 7567 >seq6807 Length=58649 Score = 104 bits (114), Expect = 4e-20 Identities = 79/92 (86%), Gaps = 1/92 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||| | | || ||||||||||||||||||||||||||||| Sbjct 16898 TACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 16957 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 ||||| ||||||||||||||||||||||||| Sbjct 16958 ATGACCATCTAAACCCAGCTCACGTTCCCTAT 16989 >seq11566 Length=2013597 Score = 95.1 bits (104), Expect = 2e-17 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 105 ATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAA 164 ||||||||||| |||||||||||| |||||||||||||||||||||||| |||||| Sbjct 442017 ATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAAGATCAA 441958 Query 165 AAAGCAACGTCG 176 ||||| |||||| Sbjct 441957 AAAGCGACGTCG 441946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854299941216