Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physeter_20catodon_20[refseq_20GCF_5F000472045.1_202013-09-30] 11,711 sequences; 2,280,727,784 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq2118 107 4e-21 seq11543 77.0 6e-12 >seq2118 Length=284119 Score = 107 bits (118), Expect = 4e-21 Identities = 179/255 (70%), Gaps = 3/255 (1%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 ||||||||| |||| | ||| | |||| || | ||||| |||||||||||||| | Sbjct 252048 CTTCTTAGAAGGACAAGTGGCATTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGCG 251991 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||| ||||| |||| |||||| | ||||||| | | || || || | | Sbjct 251990 ATGCCCTTAGCTGTTCGGGGCTGCACGCAAGATACACTGGCGGGCTCAGCGTGTGCCTAG 251931 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 | | ||| | ||| ||||| | || | | ||||| |||||| | || | Sbjct 251930 CATACGCCAGCAGGCTCCGGTAACCCATGGAACCCCATTCGTGATGGGGACCAGGGATAG 251871 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||| | | | | ||| |||||| || ||| || || ||||| || ||| ||||| Sbjct 251870 CAATTACTACCCATGAACAAGGAATTCCCAGTGAGTGCAGGTCATAAGTTTGCGGTGATT 251811 Query 311 ACGTCCCTGCCCTTT 325 | ||||||||||||| Sbjct 251810 AAGTCCCTGCCCTTT 251796 >seq11543 Length=868531 Score = 77.0 bits (84), Expect = 6e-12 Identities = 80/101 (79%), Gaps = 3/101 (3%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 156883 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 156940 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGAC 171 || |||||||||| | ||| ||||| |||||||||||| Sbjct 156941 ATTACCTTAGATGTCCATGGCTACACGCACGCTACACTGAC 156981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947089073408