Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physeter_20catodon_20[refseq_20GCF_5F000472045.1_202013-09-30] 11,711 sequences; 2,280,727,784 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq324 387 4e-105 seq5128 307 3e-81 seq1273 194 5e-47 seq207 114 4e-23 seq563 104 8e-20 seq3381 102 3e-19 seq4578 82.4 2e-13 seq4818 75.2 4e-11 >seq324 Length=596510 Score = 387 bits (428), Expect = 4e-105 Identities = 266/298 (89%), Gaps = 3/298 (1%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCAT-TTCACAAAGTCGGACTAGAGTCAAGCTCA 295 ||||||||||||||||| ||||| | || ||||| | | | ||||||||| ||||||| Sbjct 245349 CTCCCACTTATTCTACATTTCTCA--TTATCTTCACCATGCCAGACTAGAGTTAAGCTCA 245292 Query 296 ACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTA 355 |||||||||||||| || ||||||| |||||||| ||||||||||||||| ||| ||| Sbjct 245291 ACAGGGTCTTCTTTATCCTCTGATTCTGCCAAGCCTGTTCCCTTGGCTGTGTTTTTGCTG 245232 Query 356 GATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGAT 415 |||||||| ||||||||||||||||||| || ||||||| ||| ||| |||||||||||| Sbjct 245231 GATAGTAGGTAGGGACAGTGGGAATCTCATTCATCCATTTATGTGCGCCACTAATTAGAT 245172 Query 416 GACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTG 475 ||||||| |||||||||||| ||||||||||||||||||||| || ||||||| ||||| Sbjct 245171 GACGAGGTATTTGGCTACCTGAAGAGAGTCATAGTTACTCCCACCATTTACCCACGCTTC 245112 Query 476 GTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 245111 ATTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 245054 Score = 89.7 bits (98), Expect = 2e-15 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| ||| || ||||||| |||| ||| ||||||||||||||| | ||| Sbjct 245654 CTTCTGCTCCACAAGAAGTTTCTGTCCTCCCTGAACTCCCCTTAGGACACCTACATTACC 245595 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||| |||| ||| | |||||| ||||||||||||||| || |||| Sbjct 245594 ATTTGACAGGTGTAGCACCCCAGTCAAACTCCCCACCTGGCACTGTC 245548 >seq5128 Length=110269 Score = 307 bits (340), Expect = 3e-81 Identities = 247/297 (83%), Gaps = 6/297 (2%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||||||| | |||||| |||| |||||| | | ||||||||| |||||||| Sbjct 75129 CTCCCACTTAT---ATACCTCTTGAGTCTTTTCACTGTGCCAGACTAGAGTGAAGCTCAA 75185 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 | ||| || ||||||| ||||||| ||||| || || ||||||||||||||| ||| | Sbjct 75186 CGGGGACTCATTTCCCCACTGATTCTGCCAAACCTCTTTCCTTGGCTGTGGTTTTGCTGG 75245 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||| ||||||||||||||||||| || |||||||||||| ||| |||||| |||| Sbjct 75246 ATAGTAGGTAGGGACAGTGGGAATCTCATTCATCCATTCATGCATGTCCCTAATTGGATG 75305 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476 || | |||||||||||| ||||||||||| |||||||| || || |||||| | |||| Sbjct 75306 ACAAAGCATTTGGCTACTTTAAGAGAGTCTTAGTTACTTCCACCATTTACCAGAGCTTCA 75365 Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||| |||||||||||||||| |||||| || |||||||||||||| |||||| Sbjct 75366 TTGAAT---TTCACTTTGACATTCACAGCACTAGGTAGAAATCACATTGCATCAACA 75419 >seq1273 Length=389567 Score = 194 bits (214), Expect = 5e-47 Identities = 218/287 (76%), Gaps = 5/287 (2%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTC-GGACTAGAGTCAAGCTCA 295 |||||||||| ||| |||||| || ||||| | | | || || || || | ||| Sbjct 246802 CTCCCACTTAATCTTCACCTCCTGTCTCTCTTCACCATGCCAGGTTTACAGGCAGGTTCA 246743 Query 296 ACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTA 355 |||| |||||||| ||| | |||| ||||| || | ||||||||||| ||||| | Sbjct 246742 ACAG--TCTTCTTTGCCCACAGATTTTGCCAAACCA-TCCCCTTGGCTGTAGTTTCATCA 246686 Query 356 GATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGAT 415 |||| ||| || || ||| ||||| || || |||||||||||| || |||||||||| Sbjct 246685 GATAATAGGTAAAGAGAGTAGGAATATCATTCATCCATTCATGCATATCCCTAATTAGAT 246626 Query 416 GACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCC-GCCGTTTACCCGCGCTT 474 | ||||||| |||||||| ||||||||| |||||||| ||| | ||| || | || | Sbjct 246625 GGTGAGGCATGTGGCTACCCTAAGAGAGTAATAGTTACACCCATCAATTTCCCTGAGCCT 246566 Query 475 GGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCAC 521 ||||||||| || ||||||||||| ||| ||||||| ||||||| Sbjct 246565 CAGTGAATTTCTCCATTTTGACATTCAAAGCCCTGGGCAAAAATCAC 246519 >seq207 Length=654021 Score = 114 bits (126), Expect = 4e-23 Identities = 178/252 (71%), Gaps = 22/252 (9%) Strand=Plus/Minus Query 284 GAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTT--CCCTTGG 341 |||||| ||| |||| |||| || || | |||||| | ||| | | || ||||| | Sbjct 391510 GAGTCATGCTTAACATGGTCCTCCTTGTCAGCTGATCCTCTCAAACTCATTGCCCCTTAG 391451 Query 342 CTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCG- 400 |||| |||| |||| | |||| |||||| | || || ||||| Sbjct 391450 CTGTTGTTTGACTAGGTT------------AGTGAGAATCTTGG----CCGTTAATGCGT 391407 Query 401 -CGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGC 459 | || |||||||||||| ||||||||| ||||||||||||| ||||||||| | | || Sbjct 391406 ACATCTCTAATTAGATGATAAGGCATTTGACTACCTTAAGAGACTCATAGTTAGT-CTGC 391348 Query 460 CGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATC 519 | |||| | ||| ||||||||||| ||| ||| || | | |||||||||||||| Sbjct 391347 CATTTATTTAC-CTTCATTGAATTTCTTTACTCTGATGTTGAAGGTACTGGGCAGAAATC 391289 Query 520 ACATTGCGTCAA 531 |||| | |||| Sbjct 391288 ACATCACATCAA 391277 >seq563 Length=526279 Score = 104 bits (114), Expect = 8e-20 Identities = 116/152 (76%), Gaps = 11/152 (7%) Strand=Plus/Plus Query 305 TCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGA 364 ||||| || |||||||| ||||||| || ||||||| ||| |||| | |||| ||| Sbjct 485180 TCTTTGCCTGCTGATTCTGCCAAGCTAATTGCCTTGGCAGTG-TTTCCATGGATACTAGG 485238 Query 365 TAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCA 424 ||||| ||||||| | || | |||| || |||||| |||||||| || ||| Sbjct 485239 TAGGGGCAGTGGGGGTT--GT------AGTCATAGGCATCACTATTTAGATGATGAAGCA 485290 Query 425 TTTGGCTACCTTAAGAGAGTCATAGTTACTCC 456 |||||||| |||| ||||||||||||||||| Sbjct 485291 TTTGGCTATCTTA--AGAGTCATAGTTACTCC 485320 >seq3381 Length=195216 Score = 102 bits (112), Expect = 3e-19 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 432 ACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACT 491 ||||||| |||| |||||||||||| || ||||||| | |||| ||||||||||||||| Sbjct 49857 ACCTTAACAGAGGCATAGTTACTCCTGCTGTTTACCTGTGCTTCCTTGAATTTCTTCACT 49916 Query 492 TTGACATTCAGAGCAC 507 |||||||||||||||| Sbjct 49917 TTGACATTCAGAGCAC 49932 >seq4578 Length=133363 Score = 82.4 bits (90), Expect = 2e-13 Identities = 77/98 (79%), Gaps = 4/98 (4%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||| | || || ||||||||| |||| |||| || ||||||||||||||| ||| Sbjct 60203 CTTCTGCCCCACGGGGGATTTCTGTCCTCCCTGAGGCCGCCTTAGGACACCTGCATTACC 60144 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCT 104 ||| || | ||| ||||| ||||||||||||||| Sbjct 60143 ATTTGACGGGTGTACCGCC----CCAAACTCCCCACCT 60110 >seq4818 Length=123614 Score = 75.2 bits (82), Expect = 4e-11 Identities = 49/54 (91%), Gaps = 0/54 (0%) Strand=Plus/Minus Query 304 TTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGA 357 ||||||||| ||||||||||||||| || |||||||||||||||||| ||| || Sbjct 79162 TTCTTTCCCTGCTGATTCCGCCAAGGCCTTTCCCTTGGCTGTGGTTTTGCTGGA 79109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635008501728