Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteronotus_20parnellii_20[genbank_20GCA_5F000465405.1_202013-09-13] 177,401 sequences; 1,960,317,893 total letters Query= NC_031120.1 Length=241147 Score E Sequences producing significant alignments: (Bits) Value seq161904 174 2e-38 seq176166 86.0 1e-11 seq165364 84.2 3e-11 >seq161904 Length=2185 Score = 174 bits (192), Expect = 2e-38 Identities = 184/240 (77%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 196124 GACCGTACCGGCACAGGCACTA-CGTCCTATCTCGGCGCACAGATGCGCTTCGATCTGCA 196182 ||||| ||||| || ||||| | | | | ||||| |||||||||||||| || | Sbjct 839 GACCGCACCGGTACCGGCACCCGCAGCGTGT-TCGGCTGGCAGATGCGCTTCGACCTCAA 897 Query 196183 AGACGGATTCCCGCTGGTCACCACGAAGAAACTCCATCTGCGTTCCATCATTCATGAACT 196242 || || ||||||||||||||||| |||||||| || |||||||| ||||| || || || Sbjct 898 CGAAGGTTTCCCGCTGGTCACCACCAAGAAACTGCACCTGCGTTCGATCATCCACGAGCT 957 Query 196243 GCTGTGGTTCCTCAACGGGGACACCAACATCAAGTACCTGAATGACAACGGTGTCTCTAT 196302 |||||||||||| || || || ||||||||| |||||||| |||||| || || Sbjct 958 GCTGTGGTTCCTGAAAGGCGATACCAACATCGGCTACCTGAAGGACAACCAGGTACGGAT 1017 Query 196303 CTGGAACGAGTGGGCGAACGAACTCGGTAACCTGGGGCCGGTTTACGGTAAGCAGTGGCG 196362 |||| |||| ||||| ||| |||| | || || ||||| ||||| ||||||||||| Sbjct 1018 CTGGGACGAATGGGCCGACGGCAACGGTGATCTTGGCCCGGTGTACGGCAAGCAGTGGCG 1077 >seq176166 Length=10187 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 3797 GTAGTTCAGCTGGTTAGAATACTTGCCTGTCACGCAAGTGGTCGCGGGTTCGATTCCCGT 3856 |||||||||||||||||||| || ||||||||||| | |||||||||||||| |||||| Sbjct 6572 GTAGTTCAGCTGGTTAGAATGCTGGCCTGTCACGCCGGAGGTCGCGGGTTCGAGTCCCGT 6513 Query 3857 CAGTCCTGCCAT 3868 | | | ||||| Sbjct 6512 CCGCTCCGCCAT 6501 Score = 84.2 bits (92), Expect = 3e-11 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 3797 GTAGTTCAGCTGGTTAGAATACTTGCCTGTCACGCAAGTGGTCGCGGGTTCGATTCCCGT 3856 |||||||||||||||||||| || ||||||||||| | |||||||||||||| |||||| Sbjct 6733 GTAGTTCAGCTGGTTAGAATGCTGGCCTGTCACGCCGGAGGTCGCGGGTTCGAGTCCCGT 6674 Query 3857 C 3857 | Sbjct 6673 C 6673 >seq165364 Length=2733 Score = 84.2 bits (92), Expect = 3e-11 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 3797 GTAGTTCAGCTGGTTAGAATACTTGCCTGTCACGCAAGTGGTCGCGGGTTCGATTCCCGT 3856 |||||||||||||||||||| || ||||||||||| | |||||||||||||| |||||| Sbjct 136 GTAGTTCAGCTGGTTAGAATGCTGGCCTGTCACGCCGGAGGTCGCGGGTTCGAGTCCCGT 195 Query 3857 C 3857 | Sbjct 196 C 196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 769831495083720