Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20alecto_20[refseq_20GCF_5F000325575.1_202013-12-04] 65,598 sequences; 1,985,975,446 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq13480 367 4e-99 seq2058 340 6e-91 seq9850 241 4e-61 seq5692 187 8e-45 seq49557 122 3e-25 seq9096 105 2e-20 seq65591 78.8 3e-12 >seq13480 Length=7479994 Score = 367 bits (406), Expect = 4e-99 Identities = 258/293 (88%), Gaps = 1/293 (0%) Strand=Plus/Plus Query 246 ATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTT 305 |||||| || ||||| ||| ||||| | | ||||||||| ||||||||||||||||| Sbjct 2163271 ATTCTATACTTCTCATGTCTCTTCACTGCGCCAGACTAGAGTTAAGCTCAACAGGGTCTT 2163330 Query 306 CTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT 365 |||||||| |||||||| |||||||||||||||||||| ||||||| || |||||| ||| Sbjct 2163331 CTTTCCCCACTGATTCCACCAAGCCCGTTCCCTTGGCTATGGTTTCACTGGATAGTGGAT 2163390 Query 366 AGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 425 | | |||||||||||||| || ||||||||||| || ||| |||||||||||| |||||| Sbjct 2163391 AAGAACAGTGGGAATCTCATTCATCCATTCATGAGCATCAGTAATTAGATGACAAGGCAT 2163450 Query 426 TTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTC 485 ||||||| ||||||||||||||| |||||||| | ||||||||| |||| ||||||||| Sbjct 2163451 TTGGCTATCTTAAGAGAGTCATACTTACTCCCACTGTTTACCCGAGCTTCATTGAATTTC 2163510 Query 486 TTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA-TCAC 537 |||||||||||||||||||||||| ||||||||||||||| ||||||| |||| Sbjct 2163511 TTCACTTTGACATTCAGAGCACTGAGCAGAAATCACATTGTGTCAACACTCAC 2163563 >seq2058 Length=1152404 Score = 340 bits (376), Expect = 6e-91 Identities = 228/253 (90%), Gaps = 5/253 (2%) Strand=Plus/Plus Query 281 CTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTG 340 |||||||||||||||||||| ||||||||||| ||||||||||| |||||| ||| |||| Sbjct 181486 CTAGAGTCAAGCTCAACAGG-TCTTCTTTCCCTGCTGATTCCGCTAAGCCCATTCGCTTG 181544 Query 341 GCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCG 400 |||||||||||||| |||||||| ||||||||||||||||||| || ||||| ||||||| Sbjct 181545 GCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCCTTCATCCAGTCATGCG 181604 Query 401 CGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCC 460 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 181605 TGTCACTAATTAGATGACGAGGCATTTGGCTACCTTA----AGTCATAGTTACTCCCGCC 181660 Query 461 GTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCA 520 |||||| |||||| ||||||||||||||||||| |||||||||||| ||||||| ||| Sbjct 181661 ATTTACCTGCGCTTCATTGAATTTCTTCACTTTGATATTCAGAGCACTAGGCAGAAGTCA 181720 Query 521 CATTGCGTCAACA 533 ||| ||||||| Sbjct 181721 CATCCTGTCAACA 181733 >seq9850 Length=8379546 Score = 241 bits (266), Expect = 4e-61 Identities = 234/298 (79%), Gaps = 5/298 (2%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||||| || ||||||| | | | || | | ||||||| ||||| |||| Sbjct 1186191 CTCCCACTTATTTTATACCTCTCTTGACTCTGCATGT-GCCAGACTAGAATCAAGTTCAA 1186133 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 ||||||||||||||| |||||||| |||||||| |||||||| |||||||||| || Sbjct 1186132 CAGGGTCTTCTTTCCTTACTGATTCCACCAAGCCCATTCCCTTGACTGTGGTTTCACTGA 1186073 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 | || || || |||| ||| ||| | | | || ||||||| | ||||||||||||| Sbjct 1186072 ACAGAAGGCAGAGACAATGGAAATTTTGATCTTCTATTCATGTTTGGCACTAATTAGATG 1186013 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTC---CCGCCGTTTACCCGCGCT 473 | ||||||||||||||||||| |||||||||||| ||| | | | |||| || ||| Sbjct 1186012 AGAAGGCATTTGGCTACCTTAAAAGAGTCATAGTTCCTCTCTCTGACATTTATCCAAGCT 1185953 Query 474 TGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAA 531 | | |||||||||||||||||||| |||||||| |||||||||||||| | |||| Sbjct 1185952 TCACTAAATTTCTTCACTTTGACATTTAGAGCACT-GGCAGAAATCACATCACCTCAA 1185896 >seq5692 Length=25902452 Score = 187 bits (206), Expect = 8e-45 Identities = 221/302 (73%), Gaps = 17/302 (6%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||| ||||||| |||| ||||||| | ||||| | || ||||||||| |||| Sbjct 7397176 CTCTCACTTATCATACATCTCTCAAATATCTTCACTGTTCCAGAATAGAGTCAAACTCAG 7397117 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 || ||| | ||||| || ||||| || ||| | |||| |||||||||||||| ||| | Sbjct 7397116 CAAAGTCATTTTTCCTTGCCGATTCTGCTAAGTCTGTTCTCTTGGCTGTGGTTTTGCTGG 7397057 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||| ||| |||||||| |||| ||| || |||||| || ||||||||||| ||| Sbjct 7397056 ATAGTAGGTAGTTACAGTGGGGATCTTGTTCATTCATTCACGCATGTCACTAATTAAATG 7396997 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476 ||||||| |||||||| |||||| | ||||| || | |||| Sbjct 7396996 ----------------CCTTAAGGGAGTCATAATTACTCTCATCGTTTGCCAGTGCTTCA 7396953 Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA-TC 535 |||||||||| | |||||||||||||| | | || || || ||||| ||||||| || Sbjct 7396952 CTGAATTTCTTTAATTTGACATTCAGAGAAATAGGTAGGTATTACATTCTGTCAACACTC 7396893 Query 536 AC 537 || Sbjct 7396892 AC 7396891 >seq49557 Length=371 Score = 122 bits (134), Expect = 3e-25 Identities = 79/87 (91%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||||||||||||||||| ||| ||||| | | |||||||||||||||||| Sbjct 87 CTCCCACTTATTCTACACCTCTCATGTCTCTTCACCGTGCCAGACTAGAGTCAAGCTCAA 28 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCG 323 ||||||||||||||||||||||||||| Sbjct 27 CAGGGTCTTCTTTCCCCGCTGATTCCG 1 Score = 109 bits (120), Expect = 2e-21 Identities = 93/115 (81%), Gaps = 5/115 (4%) Strand=Plus/Minus Query 20 GGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGTTTAACAGATGT 79 |||| ||||||| |||| |||| | ||||||||||||||||||| |||| |||| ||| Sbjct 370 GGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACCGTTTGACAGGTGT 311 Query 80 GCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATCGGCCCGCG 134 ||||||||| ||||||||||||||| || |||| |||||| ||| |||| Sbjct 310 ACCGCCCCAGTCAAACTCCCCACCTGGCACTGTC-----CCCGGAGCGGGTCGCG 261 >seq9096 Length=24714142 Score = 105 bits (116), Expect = 2e-20 Identities = 144/197 (73%), Gaps = 7/197 (4%) Strand=Plus/Minus Query 323 GCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCT 382 |||||| | |||||| |||||||||||| ||||| || |||||| | ||| | Sbjct 21548297 GCCAAGACA-TTCCCTAGGCTGTGGTTTCATCAGATAACCAGTACAGACAGTAGAAATAT 21548239 Query 383 CGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGA 442 | || | |||||||| | ||| ||| |||| ||| |||||||||| ||||||||| Sbjct 21548238 CATTTACCCATTCATACATGTCCCTAGTTAG----TGAGCCATTTGGCTAACTTAAGAGA 21548183 Query 443 GTCATAGTTACTCCC-GCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCA 501 | ||||||||| ||| | | |||| |||| | ||| || |||||||| |||||| Sbjct 21548182 GACATAGTTACACCCATCAATCTACCTAAGCTTCTGTAAATGTCCTCACTTTGCCATTCA 21548123 Query 502 GAGCACTGGGCAGAAAT 518 || || ||||| |||| Sbjct 21548122 GAACA-TGGGCCAAAAT 21548107 >seq65591 Length=11041708 Score = 78.8 bits (86), Expect = 3e-12 Identities = 83/110 (75%), Gaps = 6/110 (5%) Strand=Plus/Plus Query 347 GTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCAC 406 ||||| || ||| | | |||||||||||| ||||| ||| | |||||| |||||| Sbjct 8800096 GTTTCACTGTATACTGGGTAGGGACAGTGGAAATCTTGTTCTTAGATTCATAGGCGTCAT 8800155 Query 407 TAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCC 456 || | ||| || |||||||||| ||||||| |||||||||| ||| Sbjct 8800156 TATTGAGAGGATGAGGCATTTGACTACCTT------GTCATAGTTATTCC 8800199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634127341504