Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20alecto_20[refseq_20GCF_5F000325575.1_202013-12-04] 65,598 sequences; 1,985,975,446 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq62689 284 4e-74 seq46601 178 4e-42 seq65594 109 2e-21 seq5349 93.3 1e-16 seq5818 89.7 2e-15 seq2892 80.6 8e-13 >seq62689 Length=1060 Score = 284 bits (314), Expect = 4e-74 Identities = 217/254 (85%), Gaps = 2/254 (1%) Strand=Plus/Minus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||| | || | |||||| ||||||| ||||| | ||||||||||| Sbjct 330 ACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTC 271 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 270 CCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 211 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 ||||||||||||||||||||||||||||| ||||||||| |||||| | |||||||||| Sbjct 210 CTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCATGGTAG 151 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC 241 || |||||||||||||||||||||||||| || ||||| | |||||| | | Sbjct 150 GCACGGCGACTACCATCGAAAGTTGATAGGGCAGACGTTCGAATGGGTCGTCGCCGCCAC 91 Query 242 -AAGGCCATGCGAT 254 | || | |||||| Sbjct 90 GAGGGGCGTGCGAT 77 >seq46601 Length=319 Score = 178 bits (196), Expect = 4e-42 Identities = 143/168 (85%), Gaps = 10/168 (6%) Strand=Plus/Plus Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTA-----CTATCAAA 398 |||||||||||||||||||||||||| |||||||| |||| | | | | | |||| Sbjct 58 GCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGAGAGGAGCGAGCGACCAAA 117 Query 399 TAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTAT-AGAT-TGCTTATACT 456 ||| ||||||||||||||||||||||||||||||||||||| || ||| || || Sbjct 118 GGAACCATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTACCAGCCGTGCGTA--CT 175 Query 457 TAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 176 TAGACATGCATGGCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 222 >seq65594 Length=21052295 Score = 109 bits (120), Expect = 2e-21 Identities = 129/168 (77%), Gaps = 14/168 (8%) Strand=Plus/Minus Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTA----AGGTACTATCAAAT 399 || |||| ||||||||||||||||| |||||| | |||| | || | | | ||| Sbjct 15337492 GCTTGTAGTAGCTCTAGAATTACCA--GTTATCTAAGTAGGACATGAGTAAGCAACCAAT 15337435 Query 400 --AAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTA-TACT 456 |||| ||||||||||||||||||| ||| |||||||| |||| | | | |||| Sbjct 15337434 GGAAAC-ATAACTGATTTAATGAGCCGTTCACAGTTTCATTGTAGC-AGCCATGAGTACT 15337377 Query 457 TAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||| |||||||||||||||||||| ||| || ||||||| Sbjct 15337376 TAGACATGCGTGGCTTAATCTTTGAGACAAACAT---GCTCCTGGCAG 15337332 >seq5349 Length=6841011 Score = 93.3 bits (102), Expect = 1e-16 Identities = 76/91 (84%), Gaps = 1/91 (1%) Strand=Plus/Minus Query 71 GGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTC 130 ||| |||| ||||||| | |||||||| |||| ||||||||| ||| ||||||||||||| Sbjct 1121014 GGAGTGGG-AATTTGCACACCTGCTGCATTCCCTGGATGTGGCAGCAGTTTCTCAGGCTC 1120956 Query 131 CCTCTCCGGAATCGAACCCTAATTCCCCGTT 161 ||||||| || | | ||| |||||||||| Sbjct 1120955 CCTCTCCACAACCATATCCTGATTCCCCGTT 1120925 >seq5818 Length=23789964 Score = 89.7 bits (98), Expect = 2e-15 Identities = 87/109 (80%), Gaps = 5/109 (5%) Strand=Plus/Plus Query 3 ACTCATTCCAATTACAAGACCCA-AAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||| | | |||||| | | ||| ||||| |||| |||||||| Sbjct 17548830 ACTCATTCCAATTACAGGGCATTGAAAGAGTCATATAT---TATTTTTTGTTACTACCTC 17548886 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGT 110 ||| |||| ||| |||||||||| || |||| |||| ||||||||||| Sbjct 17548887 CCCATGTCAAGAT-GGGTAATTTGTGCACCTGTTGCCATCCTTGGATGT 17548934 >seq2892 Length=865684 Score = 80.6 bits (88), Expect = 8e-13 Identities = 109/146 (75%), Gaps = 6/146 (4%) Strand=Plus/Plus Query 76 GGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTC-AGGC--TCCC 132 ||| || |||| ||| |||||||| ||||||||||| ||| || ||| |||| ||| Sbjct 64894 GGGCAAGTTGCATGCCCACTGCCTTCTTTGGATGTGGTGGCCATTCCTCAAGGCAGTCCT 64953 Query 133 T-CTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATC- 190 | ||| ||||| ||||| |||| || || ||| || | |||||||| || || ||| Sbjct 64954 TCCTCTGGAATTGAACCTTAATGCCTTGTCACCTGTGGTCACCATGGTTGG-TACCATCA 65012 Query 191 CTACCATCGAAAGTTGATAGGGCAGA 216 |||||| ||||| | ||| ||||| Sbjct 65013 CTACCAATGAAAGGGGGTAGAGCAGA 65038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1509409207808