Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pteropus_20vampyrus_20[refseq_20GCF_5F000151845.1_202014-12-05]
36,094 sequences; 2,198,284,804 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq30014 381 2e-103
seq68 104 7e-20
seq100 98.7 3e-18
seq173 89.7 2e-15
seq523 80.6 8e-13
>seq30014
Length=4790
Score = 381 bits (422), Expect = 2e-103
Identities = 422/557 (76%), Gaps = 59/557 (11%)
Strand=Plus/Plus
Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61
|||||||||||||||| | || | |||||| ||||||| ||||| | |||||||||||
Sbjct 3565 ACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTC 3624
Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3625 CCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 3684
Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181
||||||||||||||||||||||||||||| ||||||||| |||||| | ||||||||||
Sbjct 3685 CTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCATGGTAG 3744
Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC 241
|| |||||||||||||||||||||||||| || ||||| | |||||| | |
Sbjct 3745 GCACGGCGACTACCATCGAAAGTTGATAGGGCAGACGTTCGAATGGGTCGTCGCCGCCAC 3804
Query 242 -AAGGCCATGCGAT--TCGTTAAGTTATTATGAATCACCAA-------GGAGCC------ 285
| || | |||||| | | ||||| || ||||||| || |||
Sbjct 3805 GAGGGGCGTGCGATCGGCCCGAGGTTATCTAGAGTCACCAAAGCCGCCGGCGCCCGCCCC 3864
Query 286 ----------CCGAAGG----------GCGTTGGTTTTTTATCTAATAAATACAC----C 321
||| || | ||||| |||| |||| |||||| ||| |
Sbjct 3865 CCGGCCGGGGCCGGGGGGAGGCTGACCGGGTTGG-TTTTGATCTGATAAATGCACGCATC 3923
Query 322 CCTTCCGAAGTCGGGGT-------TTTTAGCATGTATTAGCTCTAGAATTACCACGGTTA 374
|| ||| ||||| | |||||||||||||||||||||||||| ||||
Sbjct 3924 CCCCCCGCGAGGGGGGTCAGCGCCCGTCGGCATGTATTAGCTCTAGAATTACCACAGTTA 3983
Query 375 TCCATGTAGTA-AG----GTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGC 429
|||| |||| | || | | | |||| ||| |||||||||||||||||||||||||
Sbjct 3984 TCCAAGTAGGAGAGGAGCGAGCGACCAAAGGAACCATAACTGATTTAATGAGCCATTCGC 4043
Query 430 AGTTTCACTGTA-TAG-ATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAG 487
|||||||||||| || ||| |||||||||||||||||||||||||||||||||||
Sbjct 4044 AGTTTCACTGTACCAGCCGTGC--GTACTTAGACATGCATGGCTTAATCTTTGAGACAAG 4101
Query 488 CATATGACTACTGGCAG 504
|||||| ||||||||||
Sbjct 4102 CATATG-CTACTGGCAG 4117
>seq68
Length=8909211
Score = 104 bits (114), Expect = 7e-20
Identities = 128/168 (76%), Gaps = 14/168 (8%)
Strand=Plus/Minus
Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTA----AGGTACTATCAAAT 399
|| |||| ||||||||||||||||| |||||| | |||| | || | | | |||
Sbjct 2310640 GCTTGTAGTAGCTCTAGAATTACCA--GTTATCTAAGTAGGACATGAGTAAGCAACCAAT 2310583
Query 400 --AAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTA-TACT 456
|||| ||||||||||||||||||| ||| |||||||| |||| | | | ||||
Sbjct 2310582 GGAAAC-ATAACTGATTTAATGAGCCGTTCACAGTTTCATTGTAGC-AGCCATGAGTACT 2310525
Query 457 TAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
||||||||| ||||||| |||||||||||| ||| || |||||||
Sbjct 2310524 TAGACATGCGTGGCTTAGTCTTTGAGACAAACAT---GCTCCTGGCAG 2310480
>seq100
Length=3772657
Score = 98.7 bits (108), Expect = 3e-18
Identities = 77/91 (85%), Gaps = 1/91 (1%)
Strand=Plus/Plus
Query 71 GGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTC 130
||| |||| ||||||| | ||||||||||||| ||||||||| ||| |||||||||||||
Sbjct 3642019 GGAGTGGG-AATTTGCACACCTGCTGCCTTCCCTGGATGTGGCAGCAGTTTCTCAGGCTC 3642077
Query 131 CCTCTCCGGAATCGAACCCTAATTCCCCGTT 161
||||||| || | | ||| ||||||||||
Sbjct 3642078 CCTCTCCACAACCATATCCTGATTCCCCGTT 3642108
>seq173
Length=3539094
Score = 89.7 bits (98), Expect = 2e-15
Identities = 87/109 (80%), Gaps = 5/109 (5%)
Strand=Plus/Plus
Query 3 ACTCATTCCAATTACAAGACCCA-AAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61
|||||||||||||||| | | |||||| | | ||| ||||| |||| ||||||||
Sbjct 1100292 ACTCATTCCAATTACAGGGCATTGAAAGAGTCATATAT---TATTTTTTGTTACTACCTC 1100348
Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGT 110
||| |||| ||| |||||||||| || |||| |||| |||||||||||
Sbjct 1100349 CCCATGTCAAGAT-GGGTAATTTGTGCACCTGTTGCCATCCTTGGATGT 1100396
>seq523
Length=542872
Score = 80.6 bits (88), Expect = 8e-13
Identities = 109/146 (75%), Gaps = 6/146 (4%)
Strand=Plus/Plus
Query 76 GGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTC-AGGC--TCCC 132
||| || |||| ||| |||||||| ||||||||||| ||| || ||| |||| |||
Sbjct 105824 GGGCAAGTTGCATGCCCACTGCCTTCTTTGGATGTGGTGGCCATTCCTCAAGGCAGTCCT 105883
Query 133 T-CTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATC- 190
| ||| ||||| ||||| |||| || || ||| || | |||||||| || || |||
Sbjct 105884 TCCTCTGGAATTGAACCTTAATGCCTTGTCACCTGTGGTCACCATGGTTGG-TACCATCA 105942
Query 191 CTACCATCGAAAGTTGATAGGGCAGA 216
|||||| ||||| | ||| |||||
Sbjct 105943 CTACCAATGAAAGGGGGTAGAGCAGA 105968
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1509854836224
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |