Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20vampyrus_20[refseq_20GCF_5F000151845.1_202014-12-05] 36,094 sequences; 2,198,284,804 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq30014 381 2e-103 seq68 104 7e-20 seq100 98.7 3e-18 seq173 89.7 2e-15 seq523 80.6 8e-13 >seq30014 Length=4790 Score = 381 bits (422), Expect = 2e-103 Identities = 422/557 (76%), Gaps = 59/557 (11%) Strand=Plus/Plus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||| | || | |||||| ||||||| ||||| | ||||||||||| Sbjct 3565 ACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTC 3624 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3625 CCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 3684 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 ||||||||||||||||||||||||||||| ||||||||| |||||| | |||||||||| Sbjct 3685 CTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCATGGTAG 3744 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC 241 || |||||||||||||||||||||||||| || ||||| | |||||| | | Sbjct 3745 GCACGGCGACTACCATCGAAAGTTGATAGGGCAGACGTTCGAATGGGTCGTCGCCGCCAC 3804 Query 242 -AAGGCCATGCGAT--TCGTTAAGTTATTATGAATCACCAA-------GGAGCC------ 285 | || | |||||| | | ||||| || ||||||| || ||| Sbjct 3805 GAGGGGCGTGCGATCGGCCCGAGGTTATCTAGAGTCACCAAAGCCGCCGGCGCCCGCCCC 3864 Query 286 ----------CCGAAGG----------GCGTTGGTTTTTTATCTAATAAATACAC----C 321 ||| || | ||||| |||| |||| |||||| ||| | Sbjct 3865 CCGGCCGGGGCCGGGGGGAGGCTGACCGGGTTGG-TTTTGATCTGATAAATGCACGCATC 3923 Query 322 CCTTCCGAAGTCGGGGT-------TTTTAGCATGTATTAGCTCTAGAATTACCACGGTTA 374 || ||| ||||| | |||||||||||||||||||||||||| |||| Sbjct 3924 CCCCCCGCGAGGGGGGTCAGCGCCCGTCGGCATGTATTAGCTCTAGAATTACCACAGTTA 3983 Query 375 TCCATGTAGTA-AG----GTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGC 429 |||| |||| | || | | | |||| ||| ||||||||||||||||||||||||| Sbjct 3984 TCCAAGTAGGAGAGGAGCGAGCGACCAAAGGAACCATAACTGATTTAATGAGCCATTCGC 4043 Query 430 AGTTTCACTGTA-TAG-ATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAG 487 |||||||||||| || ||| ||||||||||||||||||||||||||||||||||| Sbjct 4044 AGTTTCACTGTACCAGCCGTGC--GTACTTAGACATGCATGGCTTAATCTTTGAGACAAG 4101 Query 488 CATATGACTACTGGCAG 504 |||||| |||||||||| Sbjct 4102 CATATG-CTACTGGCAG 4117 >seq68 Length=8909211 Score = 104 bits (114), Expect = 7e-20 Identities = 128/168 (76%), Gaps = 14/168 (8%) Strand=Plus/Minus Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTA----AGGTACTATCAAAT 399 || |||| ||||||||||||||||| |||||| | |||| | || | | | ||| Sbjct 2310640 GCTTGTAGTAGCTCTAGAATTACCA--GTTATCTAAGTAGGACATGAGTAAGCAACCAAT 2310583 Query 400 --AAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTA-TACT 456 |||| ||||||||||||||||||| ||| |||||||| |||| | | | |||| Sbjct 2310582 GGAAAC-ATAACTGATTTAATGAGCCGTTCACAGTTTCATTGTAGC-AGCCATGAGTACT 2310525 Query 457 TAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||| ||||||| |||||||||||| ||| || ||||||| Sbjct 2310524 TAGACATGCGTGGCTTAGTCTTTGAGACAAACAT---GCTCCTGGCAG 2310480 >seq100 Length=3772657 Score = 98.7 bits (108), Expect = 3e-18 Identities = 77/91 (85%), Gaps = 1/91 (1%) Strand=Plus/Plus Query 71 GGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTC 130 ||| |||| ||||||| | ||||||||||||| ||||||||| ||| ||||||||||||| Sbjct 3642019 GGAGTGGG-AATTTGCACACCTGCTGCCTTCCCTGGATGTGGCAGCAGTTTCTCAGGCTC 3642077 Query 131 CCTCTCCGGAATCGAACCCTAATTCCCCGTT 161 ||||||| || | | ||| |||||||||| Sbjct 3642078 CCTCTCCACAACCATATCCTGATTCCCCGTT 3642108 >seq173 Length=3539094 Score = 89.7 bits (98), Expect = 2e-15 Identities = 87/109 (80%), Gaps = 5/109 (5%) Strand=Plus/Plus Query 3 ACTCATTCCAATTACAAGACCCA-AAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||| | | |||||| | | ||| ||||| |||| |||||||| Sbjct 1100292 ACTCATTCCAATTACAGGGCATTGAAAGAGTCATATAT---TATTTTTTGTTACTACCTC 1100348 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGT 110 ||| |||| ||| |||||||||| || |||| |||| ||||||||||| Sbjct 1100349 CCCATGTCAAGAT-GGGTAATTTGTGCACCTGTTGCCATCCTTGGATGT 1100396 >seq523 Length=542872 Score = 80.6 bits (88), Expect = 8e-13 Identities = 109/146 (75%), Gaps = 6/146 (4%) Strand=Plus/Plus Query 76 GGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTC-AGGC--TCCC 132 ||| || |||| ||| |||||||| ||||||||||| ||| || ||| |||| ||| Sbjct 105824 GGGCAAGTTGCATGCCCACTGCCTTCTTTGGATGTGGTGGCCATTCCTCAAGGCAGTCCT 105883 Query 133 T-CTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATC- 190 | ||| ||||| ||||| |||| || || ||| || | |||||||| || || ||| Sbjct 105884 TCCTCTGGAATTGAACCTTAATGCCTTGTCACCTGTGGTCACCATGGTTGG-TACCATCA 105942 Query 191 CTACCATCGAAAGTTGATAGGGCAGA 216 |||||| ||||| | ||| ||||| Sbjct 105943 CTACCAATGAAAGGGGGTAGAGCAGA 105968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1509854836224