Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013-
09-15] 160,500 sequences; 1,926,439,238 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq138012 347 2e-93
seq158649 205 2e-50
seq61508 197 2e-48
seq110288 122 1e-25
seq4153 100 5e-19
>seq138012
Length=1780
Score = 347 bits (384), Expect = 2e-93
Identities = 254/294 (86%), Gaps = 1/294 (0%)
Strand=Plus/Minus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59
|||| ||| | |||||||| | | || |||||||||||||||||||||||||||||
Sbjct 1085 TACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 1026
Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1025 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 966
Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 965 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 906
Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 905 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCT 846
Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293
| ||| | || | |||||||| ||||| | |||||| ||| |||||||
Sbjct 845 TAAAACCCAAAAGGTCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTC 792
>seq158649
Length=9679
Score = 205 bits (226), Expect = 2e-50
Identities = 198/251 (79%), Gaps = 9/251 (4%)
Strand=Plus/Plus
Query 47 ACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAAT 106
|||||||||||||| ||||||||| |||||||||| |||||||||||||| |||||||
Sbjct 5510 ACTAACCTGTCTCACAACGGTCTAATCCCAGCTCACATTCCCTATTAGTGGTTGAACAAC 5569
Query 107 CCAACGCTT----ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATC 162
|||| ||| | ||||||| |||| |||| ||||||||||||||||||||||||
Sbjct 5570 TCAACACTTGGTGAGTGAATTCTTCTTCACAATGACAGGAAGAGCCGACATCGAAGGATC 5629
Query 163 AAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTT 222
| ||||| |||||||||||||| |||||| |||||||||| |||| || ||| ||||
Sbjct 5630 ATAAAGCGACGTCGCTATGAACACTTGGCCACCACAAGCCATTTAT--CTCTGGAGACTT 5687
Query 223 TTCTGGCACCT-CTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCA 281
||||| ||||| ||| || ||| | | | |||||| | ||||| | ||||||
Sbjct 5688 TTCTGACACCTCCTA--CTTAAACCCAAAAAGTCAGAAGGATTGTGAGGCCCCGCTTTCA 5745
Query 282 TGGTTTGTATT 292
|| ||||||
Sbjct 5746 CTGTCTGTATT 5756
>seq61508
Length=66671
Score = 197 bits (218), Expect = 2e-48
Identities = 215/283 (76%), Gaps = 3/283 (1%)
Strand=Plus/Plus
Query 12 ATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAA 71
|||||||| | |||| ||||| |||||||||| |||||| ||||| |||||||||
Sbjct 54095 ATTACCATGGCTACGACA--CATCAATAGGGTAAAAGTAACCTATCTCACCACGGTCTAA 54152
Query 72 ACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCG 131
|||| |||| |||||||| || ||||||||| ||||| | | ||||| ||||||
Sbjct 54153 TCCCAACTCATGTTCCCTAATATTGGGTGAACTGTCCAATGGCTGGTGAATTTTGCTTCA 54212
Query 132 GTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGC 191
||||||| |||| || ||| ||||||||||||| ||| || | ||||||| || ||
Sbjct 54213 AAATGATAGTAAGAACCAACACAGAAGGATCAAAAAACAAACTCACCATGAACGTTTTGC 54272
Query 192 TGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAG 251
| ||||||||||||||||||||||||||||||||| ||||| | | ||| |
Sbjct 54273 AGTCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGATACCTCCTGTTTAAAACCAAAAA 54332
Query 252 GGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294
|| | ||| ||| ||||| |||||||| | ||||||||
Sbjct 54333 GGTCAGAAGAATC-TGAGGCCCCACTTTCACTGCCTGTATTCA 54374
>seq110288
Length=31712
Score = 122 bits (134), Expect = 1e-25
Identities = 150/203 (74%), Gaps = 8/203 (4%)
Strand=Plus/Plus
Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90
|||||||||| |||||||| ||| ||||||| | |||| ||||||||| ||| ||
Sbjct 29175 TCATCAGTAGAGTAAAACTGTCCT--CTCATGATTGCCTAATCCCAGCTCATGTTTTTTA 29232
Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150
||||||||||||||||||||| ||| ||| |||||||| | | ||| ||||
Sbjct 29233 TTAGTGGGTGAACAATCCAACACTTGATGAAGTCTGCTTC-----AAAATGAAAAGCCAG 29287
Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210
|| ||||| |||| | || ||||| || ||||| | ||||| || ||||||
Sbjct 29288 TGTCTAAGGACTGAAAAATAGAGTTCCTATG-ACACTTGGTTACCACAGTACATTTATCC 29346
Query 211 CTGTGGTAACTTTTCTGGCACCT 233
|| |||||||||||| |||||
Sbjct 29347 CTCCAGTAACTTTTCTGACACCT 29369
>seq4153
Length=8259
Score = 100 bits (110), Expect = 5e-19
Identities = 114/154 (74%), Gaps = 8/154 (5%)
Strand=Plus/Minus
Query 89 TATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGAT--------AG 140
||||||||| ||||||||| ||||||| |||||||||||| |||| |
Sbjct 7158 TATTAGTGGATGAACAATCTAACGCTTCATGAATTCTGCTTCACAATGACTTTTCACAAT 7099
Query 141 GAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAG 200
|||||| ||||| ||||||| | ||| || | |||||| | |||| ||||| |||
Sbjct 7098 GAAGAGTCGACACTGAAGGATTAGAAAAGGACATTACTATGAGGGATTGGATGCCATAAG 7039
Query 201 CCAGTTATCCCTGTGGTAACTTTTCTGGCACCTC 234
||| ||||||||||| | ||||||| ||||||
Sbjct 7038 TCAGCTATCCCTGTGGCGATTTTTCTGACACCTC 7005
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 853028688000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |