Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013- 09-15] 160,500 sequences; 1,926,439,238 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq138012 347 2e-93 seq158649 205 2e-50 seq61508 197 2e-48 seq110288 122 1e-25 seq4153 100 5e-19 >seq138012 Length=1780 Score = 347 bits (384), Expect = 2e-93 Identities = 254/294 (86%), Gaps = 1/294 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||| | | || ||||||||||||||||||||||||||||| Sbjct 1085 TACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 1026 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1025 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 966 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 965 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 906 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| ||||||||||||||||||||||||||||||||||| |||||| || Sbjct 905 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCT 846 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | ||| | || | |||||||| ||||| | |||||| ||| ||||||| Sbjct 845 TAAAACCCAAAAGGTCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTC 792 >seq158649 Length=9679 Score = 205 bits (226), Expect = 2e-50 Identities = 198/251 (79%), Gaps = 9/251 (4%) Strand=Plus/Plus Query 47 ACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAAT 106 |||||||||||||| ||||||||| |||||||||| |||||||||||||| ||||||| Sbjct 5510 ACTAACCTGTCTCACAACGGTCTAATCCCAGCTCACATTCCCTATTAGTGGTTGAACAAC 5569 Query 107 CCAACGCTT----ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATC 162 |||| ||| | ||||||| |||| |||| |||||||||||||||||||||||| Sbjct 5570 TCAACACTTGGTGAGTGAATTCTTCTTCACAATGACAGGAAGAGCCGACATCGAAGGATC 5629 Query 163 AAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTT 222 | ||||| |||||||||||||| |||||| |||||||||| |||| || ||| |||| Sbjct 5630 ATAAAGCGACGTCGCTATGAACACTTGGCCACCACAAGCCATTTAT--CTCTGGAGACTT 5687 Query 223 TTCTGGCACCT-CTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCA 281 ||||| ||||| ||| || ||| | | | |||||| | ||||| | |||||| Sbjct 5688 TTCTGACACCTCCTA--CTTAAACCCAAAAAGTCAGAAGGATTGTGAGGCCCCGCTTTCA 5745 Query 282 TGGTTTGTATT 292 || |||||| Sbjct 5746 CTGTCTGTATT 5756 >seq61508 Length=66671 Score = 197 bits (218), Expect = 2e-48 Identities = 215/283 (76%), Gaps = 3/283 (1%) Strand=Plus/Plus Query 12 ATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAA 71 |||||||| | |||| ||||| |||||||||| |||||| ||||| ||||||||| Sbjct 54095 ATTACCATGGCTACGACA--CATCAATAGGGTAAAAGTAACCTATCTCACCACGGTCTAA 54152 Query 72 ACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCG 131 |||| |||| |||||||| || ||||||||| ||||| | | ||||| |||||| Sbjct 54153 TCCCAACTCATGTTCCCTAATATTGGGTGAACTGTCCAATGGCTGGTGAATTTTGCTTCA 54212 Query 132 GTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGC 191 ||||||| |||| || ||| ||||||||||||| ||| || | ||||||| || || Sbjct 54213 AAATGATAGTAAGAACCAACACAGAAGGATCAAAAAACAAACTCACCATGAACGTTTTGC 54272 Query 192 TGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAG 251 | ||||||||||||||||||||||||||||||||| ||||| | | ||| | Sbjct 54273 AGTCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGATACCTCCTGTTTAAAACCAAAAA 54332 Query 252 GGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 || | ||| ||| ||||| |||||||| | |||||||| Sbjct 54333 GGTCAGAAGAATC-TGAGGCCCCACTTTCACTGCCTGTATTCA 54374 >seq110288 Length=31712 Score = 122 bits (134), Expect = 1e-25 Identities = 150/203 (74%), Gaps = 8/203 (4%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||| |||||||| ||| ||||||| | |||| ||||||||| ||| || Sbjct 29175 TCATCAGTAGAGTAAAACTGTCCT--CTCATGATTGCCTAATCCCAGCTCATGTTTTTTA 29232 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||||||||||| ||| ||| |||||||| | | ||| |||| Sbjct 29233 TTAGTGGGTGAACAATCCAACACTTGATGAAGTCTGCTTC-----AAAATGAAAAGCCAG 29287 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 || ||||| |||| | || ||||| || ||||| | ||||| || |||||| Sbjct 29288 TGTCTAAGGACTGAAAAATAGAGTTCCTATG-ACACTTGGTTACCACAGTACATTTATCC 29346 Query 211 CTGTGGTAACTTTTCTGGCACCT 233 || |||||||||||| ||||| Sbjct 29347 CTCCAGTAACTTTTCTGACACCT 29369 >seq4153 Length=8259 Score = 100 bits (110), Expect = 5e-19 Identities = 114/154 (74%), Gaps = 8/154 (5%) Strand=Plus/Minus Query 89 TATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGAT--------AG 140 ||||||||| ||||||||| ||||||| |||||||||||| |||| | Sbjct 7158 TATTAGTGGATGAACAATCTAACGCTTCATGAATTCTGCTTCACAATGACTTTTCACAAT 7099 Query 141 GAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAG 200 |||||| ||||| ||||||| | ||| || | |||||| | |||| ||||| ||| Sbjct 7098 GAAGAGTCGACACTGAAGGATTAGAAAAGGACATTACTATGAGGGATTGGATGCCATAAG 7039 Query 201 CCAGTTATCCCTGTGGTAACTTTTCTGGCACCTC 234 ||| ||||||||||| | ||||||| |||||| Sbjct 7038 TCAGCTATCCCTGTGGCGATTTTTCTGACACCTC 7005 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 853028688000