Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013- 09-15] 160,500 sequences; 1,926,439,238 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq138012 473 4e-131 seq85610 298 2e-78 seq18501 295 2e-77 seq4153 273 7e-71 seq68379 255 2e-65 seq85200 145 2e-32 seq158649 86.0 2e-14 seq77438 80.6 9e-13 seq66940 75.2 4e-11 >seq138012 Length=1780 Score = 473 bits (524), Expect = 4e-131 Identities = 283/297 (95%), Gaps = 0/297 (0%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||||||||||||||||| ||| ||||| | | |||||||||||||||||| Sbjct 462 CTCCCACTTATTCTACACCTCTCATGTCTCTTCACCGTGCCAGACTAGAGTCAAGCTCAA 403 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 402 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGG 343 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 342 ATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAATTAGATG 283 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 282 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCA 223 Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 222 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATCGCGTCAACA 166 Score = 118 bits (130), Expect = 3e-24 Identities = 103/128 (80%), Gaps = 5/128 (4%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || |||| ||||||| |||| |||| | ||||||||||||||||||| Sbjct 758 CTTCTGCTCCACGGGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACC 699 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||| |||| ||| ||||||||| ||||||||||||||| || |||| |||||| | Sbjct 698 GTTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGGCACTGTC-----CCCGGAGC 644 Query 127 GGCCCGCG 134 || |||| Sbjct 643 GGGTCGCG 636 >seq85610 Length=15333 Score = 298 bits (330), Expect = 2e-78 Identities = 252/312 (81%), Gaps = 14/312 (4%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||||||| ||||||||| ||| ||||| | | ||| |||| ||||||| Sbjct 1955 CTCCCACTTATTCTGCACCTCTCATGTCTCTTCACGGTGCCCTACTGGAGTTAAGCTCAG 1896 Query 297 CAGGGTCTTCTTTCCCCG------------CTGATTCCGCCAAGCCCGTTCCCTTGGCTG 344 |||||||||||||||| |||||||| ||||| || ||| |||||||| Sbjct 1895 CAGGGTCTTCTTTCCCNNNNNNNNNNNCTACTGATTCCACCAAGGCCATTCACTTGGCTG 1836 Query 345 TGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTC 404 ||||||| || |||||| | |||||||||||||||||| ||| | |||||||||| | || Sbjct 1835 TGGTTTCCCTGGATAGTGGGTAGGGACAGTGGGAATCTGGTTCACCCATTCATGCACCTC 1776 Query 405 ACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTT 464 ||||||| | |||||| ||||||| ||||||| |||||||||||||||| |||| ||| Sbjct 1775 ACTAATTGGGTGACGACGCATTTGACTACCTT--GAGAGTCATAGTTACTTTCGCCATTT 1718 Query 465 ACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATT 524 || || ||| |||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1717 ACTGGCCCTTCATTGAATTTTCTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATC 1658 Query 525 GCGTCAACATCA 536 | |||||| || Sbjct 1657 ACATCAACACCA 1646 >seq18501 Length=25746 Score = 295 bits (326), Expect = 2e-77 Identities = 245/297 (82%), Gaps = 3/297 (1%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||| |||||||||||||||| ||| ||||| | | || |||| ||| | || Sbjct 17269 CTCCCACGTATTCTACACCTCTCATGTCTCTTCACTGTGCCAGAGCAGAGAAAAGTTGAA 17210 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||| |||||||||| || |||||| |||||||| ||| ||||| | | | || | | | Sbjct 17209 CAGG--CTTCTTTCCCTGCCGATTCCACCAAGCCCATTCTCTTGGATATAGGTTTGATGG 17152 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||| ||||||||||||||||||||| |||||||||||| | |||||| ||||| | Sbjct 17151 ATAGTAGGCAGGGACAGTGGGAATCTCGTTCATCCATTCATGCACATCACTACTTAGAAG 17092 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476 | |||| | ||| || |||||||||| |||||||||||||| || |||||| |||||| Sbjct 17091 ATGAGGTACTTGTCTGCCTTAAGAGAATCATAGTTACTCCC-CCATTTACCAGCGCTTCA 17033 Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||| ||||| |||| | ||||||||||||||||||||| ||||||||| Sbjct 17032 TTGAATTTCTTCGCTTTGGCATTTAAAGCACTGGGCAGAAATCACATCGCGTCAACA 16976 >seq4153 Length=8259 Score = 273 bits (302), Expect = 7e-71 Identities = 243/303 (80%), Gaps = 7/303 (2%) Strand=Plus/Minus Query 238 TCCCACTTATTCTACACCTCTCAAGTCATTTCACAA---AGTCGGACTAGAGTCAAGCTC 294 ||||||||||||||||||| | | ||| ||||| || || ||||||||||||| Sbjct 6621 TCCCACTTATTCTACACCTTTAATGTCTCTTCACTTGCCAGACGAGATAGAGTCAAGCTC 6562 Query 295 AACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCT 354 ||||||||| | |||| ||||||||| |||| ||| ||||||||||||||||||| || Sbjct 6561 AACAGGGTCCACGTTCCTAGCTGATTCCTCCAACCCCATTCCCTTGGCTGTGGTTTCACT 6502 Query 355 AGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGA 414 || || || || | ||||||||||| || || |||||||||||| | ||||||||||| Sbjct 6501 GGAGAGAAGGTAAGTACAGTGGGAATATCATTTATCCATTCATGCAGGGCACTAATTAGA 6442 Query 415 TGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACT----CCCGCCGTTTACCCGC 470 ||| |||||| ||||| ||||| ||||||| |||||| | || ||| || || | | Sbjct 6441 TGAGGAGGCACTTGGCCTCCTTAGGAGAGTCCTAGTTATTCCTGCCTGCCATTCACTCAC 6382 Query 471 GCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCA 530 ||| |||||||||||||| |||| |||||||||||||||||||||||||| | ||| Sbjct 6381 GCTGCACTGAATTTCTTCACTCTGACCTTCAGAGCACTGGGCAGAAATCACATCACATCA 6322 Query 531 ACA 533 ||| Sbjct 6321 ACA 6319 >seq68379 Length=10300 Score = 255 bits (282), Expect = 2e-65 Identities = 233/295 (79%), Gaps = 13/295 (4%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||||| |||||||||| |||| |||| | || |||||||||||||| Sbjct 2596 CTCCCACTTATTATACACCTCTCGAGTCTCTTCATTGTTCCAGAATAGAGTCAAGCTCAG 2655 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 || || || ||||| | ||||||| ||||| | ||||||| ||||||||||| ||| | Sbjct 2656 CAAAGTATTTTTTCCTCACTGATTCTGCCAAATCTGTTCCCTCGGCTGTGGTTTTGCTGG 2715 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||| |||||||||| ||||||| ||| ||| |||||||| |||| ||| |||||| Sbjct 2716 ATAGTAGGTAGGGACAGTAGGAATCTTGTTCATCTATTCATGCATGTCAGTAA-TAGATG 2774 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476 ||||||||||||||||||||||| |||| | |||||| || | |||||| | |||| Sbjct 2775 ACGAGGCATTTGGCTACCTTAAGGGAGTTAGAGTTACGTCCATCATTTACCTGTGCTTCA 2834 Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAA 531 |||||||| |||||||||||| || |||||||||| |||||||| Sbjct 2835 TTGAATTT------------ATTCAGAGCACTAGGTAGAAATCACACTGCGTCAA 2877 >seq85200 Length=33114 Score = 145 bits (160), Expect = 2e-32 Identities = 207/286 (72%), Gaps = 8/286 (3%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTC-GGACTAGAGTCAAGCTCA 295 ||||| |||| |||| || || ||| ||||| | | | || || ||||| | ||| Sbjct 19599 CTCCCGCTTAATCTATACTTCCTGTGTCTCTTCACCATGCCAGGTTTACAGTCAGGTTCA 19658 Query 296 ACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTA 355 | || || |||||| ||| ||||| |||||||| ||||||||||||||||||| | Sbjct 19659 AGAGAGTGTTCTTTGCCCAAAGATTCTGCCAAGCCA-TTCCCTTGGCTGTGGTTTCATCA 19717 Query 356 GATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGAT 415 | || | | |||| | | ||| || | | | ||||| | ||| ||||| ||| Sbjct 19718 GGTAATGAA----GACAATAGCAATATCACTCAGCTATTCACACATGTCCTTAATTCGAT 19773 Query 416 GACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCC-GCCGTTTACCCGCGCTT 474 | ||| ||| || |||||||||||||||||||||||| ||| | ||||| |||| Sbjct 19774 GT-GAGACATATGACTACCTTAAGAGAGTCATAGTTACACCCATCAATTTACTTAAGCTT 19832 Query 475 GGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCA 520 | ||| ||| |||||||||||||| | ||||||||| |||||| Sbjct 19833 CTGTAAATATCTCCACTTTGACATTCACATCACTGGGCAAAAATCA 19878 >seq158649 Length=9679 Score = 86.0 bits (94), Expect = 2e-14 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || ||| ||||||| |||| |||| | ||||| | |||||||| || Sbjct 5790 CTTCTGCTCCACGCGAGGTTTCTGTCCTCCCTGAGCTCACCTTAAGGCACCTGCGATACC 5849 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||| |||| ||||||||||| |||||||||||||| || |||| Sbjct 5850 GTTGGACAGGTGTGCCGCCCCCATGAAACTCCCCACCTGGCACTGTC 5896 >seq77438 Length=24637 Score = 80.6 bits (88), Expect = 9e-13 Identities = 95/124 (77%), Gaps = 6/124 (5%) Strand=Plus/Plus Query 286 GTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCC-GCCAAGCCCGTTCCCTTGGCTG 344 || ||||||||| |||||| |||| |||||| | ||| ||| ||| || ||| || Sbjct 18992 GTTAAGCTCAACCAGGTCTT---TCCCTGCTGATAACTGCCCAGCTAGTTACCGTGGTTG 19048 Query 345 TGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTC 404 | |||| | ||| ||| ||||||||||||||||||| || |||||||| || || || Sbjct 19049 TA-TTTCA-TGGATCCTAGCTAGGGACAGTGGGAATCTCCTTCATCCATTCGTGGGCATC 19106 Query 405 ACTA 408 |||| Sbjct 19107 ACTA 19110 >seq66940 Length=41180 Score = 75.2 bits (82), Expect = 4e-11 Identities = 50/56 (89%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 478 TGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||| |||||| |||||||||||||| ||||||| |||||| | ||||||| Sbjct 18697 TGAATTTCTGCACTTTAACATTCAGAGCACTAGGCAGAATTCACATAGTGTCAACA 18752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1632575504000