Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013- 09-15] 160,500 sequences; 1,926,439,238 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq141577 381 2e-103 seq124273 80.6 8e-13 seq147171 77.0 1e-11 >seq141577 Length=2233 Score = 381 bits (422), Expect = 2e-103 Identities = 422/557 (76%), Gaps = 59/557 (11%) Strand=Plus/Minus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||| | || | |||||| ||||||| ||||| | ||||||||||| Sbjct 692 ACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTC 633 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 632 CCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 573 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 ||||||||||||||||||||||||||||| ||||||||| |||||| | |||||||||| Sbjct 572 CTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCATGGTAG 513 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC 241 || |||||||||||||||||||||||||| || ||||| | |||||| | | Sbjct 512 GCACGGCGACTACCATCGAAAGTTGATAGGGCAGACGTTCGAATGGGTCGTCGCCGCCAC 453 Query 242 -AAGGCCATGCGAT--TCGTTAAGTTATTATGAATCACCAA-------GGAGCC------ 285 || | |||||| | | ||||| || ||||||| || ||| Sbjct 452 GGGGGGCGTGCGATCGGCCCGAGGTTATCTAGAGTCACCAAAGCCGCCGGCGCCCGCCCC 393 Query 286 ----------CCGAAGG----------GCGTTGGTTTTTTATCTAATAAATACAC----C 321 |||| || | ||||| |||| |||| |||||| ||| | Sbjct 392 CCGGCCGGGGCCGAGGGGAGGCTGACCGGGTTGG-TTTTGATCTGATAAATGCACGCATC 334 Query 322 CCTTCCGAAGTCGGGGT-------TTTTAGCATGTATTAGCTCTAGAATTACCACGGTTA 374 || ||| ||||| | |||||||||||||||||||||||||| |||| Sbjct 333 CCCCCCGCGAGGGGGGTCAGCGCCCGTCGGCATGTATTAGCTCTAGAATTACCACAGTTA 274 Query 375 TCCATGTAGTA-AG----GTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGC 429 |||| |||| | || | | | |||| ||| ||||||||||||||||||||||||| Sbjct 273 TCCAAGTAGGAGAGGAGCGAGCGACCAAAGGAACCATAACTGATTTAATGAGCCATTCGC 214 Query 430 AGTTTCACTGTA-TAG-ATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAG 487 |||||||||||| || ||| ||||||||||||||||||||||||||||||||||| Sbjct 213 AGTTTCACTGTACCAGCCGTGC--GTACTTAGACATGCATGGCTTAATCTTTGAGACAAG 156 Query 488 CATATGACTACTGGCAG 504 |||||| |||||||||| Sbjct 155 CATATG-CTACTGGCAG 140 >seq124273 Length=11251 Score = 80.6 bits (88), Expect = 8e-13 Identities = 85/111 (77%), Gaps = 1/111 (1%) Strand=Plus/Plus Query 5 TCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCC 64 ||||| |||||||| | | ||| | ||||||| ||||| |||||||||||||| | Sbjct 10732 TCATTTCAATTACAGGGCATTGAAGTGTCCTGTATTTTTATTTTTTGTCACTACCTCCTC 10791 Query 65 GTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAG 115 |||| || ||||||||||| | |||| |||| |||||||| || ||| Sbjct 10792 ATGTCAAGA-TGGGTAATTTGTGTACCTGTTGCCATCCTTGGACATGATAG 10841 >seq147171 Length=3200 Score = 77.0 bits (84), Expect = 1e-11 Identities = 68/84 (81%), Gaps = 1/84 (1%) Strand=Plus/Minus Query 76 GGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCC-TC 134 ||| ||||||| |||||||||| | | ||||||||| ||| | ||||||||||||| || Sbjct 360 GGGGAATTTGCATGCCTGCTGCCATTCCTGGATGTGGCAGCAGCTTCTCAGGCTCCCTTC 301 Query 135 TCCGGAATCGAACCCTAATTCCCC 158 ||| ||||| | || ||||||| Sbjct 300 TCCAGAATCATATCCGGATTCCCC 277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1507975808000