Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013-
09-15] 160,500 sequences; 1,926,439,238 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq141577 381 2e-103
seq124273 80.6 8e-13
seq147171 77.0 1e-11
>seq141577
Length=2233
Score = 381 bits (422), Expect = 2e-103
Identities = 422/557 (76%), Gaps = 59/557 (11%)
Strand=Plus/Minus
Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61
|||||||||||||||| | || | |||||| ||||||| ||||| | |||||||||||
Sbjct 692 ACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTC 633
Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 632 CCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 573
Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181
||||||||||||||||||||||||||||| ||||||||| |||||| | ||||||||||
Sbjct 572 CTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCATGGTAG 513
Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC 241
|| |||||||||||||||||||||||||| || ||||| | |||||| | |
Sbjct 512 GCACGGCGACTACCATCGAAAGTTGATAGGGCAGACGTTCGAATGGGTCGTCGCCGCCAC 453
Query 242 -AAGGCCATGCGAT--TCGTTAAGTTATTATGAATCACCAA-------GGAGCC------ 285
|| | |||||| | | ||||| || ||||||| || |||
Sbjct 452 GGGGGGCGTGCGATCGGCCCGAGGTTATCTAGAGTCACCAAAGCCGCCGGCGCCCGCCCC 393
Query 286 ----------CCGAAGG----------GCGTTGGTTTTTTATCTAATAAATACAC----C 321
|||| || | ||||| |||| |||| |||||| ||| |
Sbjct 392 CCGGCCGGGGCCGAGGGGAGGCTGACCGGGTTGG-TTTTGATCTGATAAATGCACGCATC 334
Query 322 CCTTCCGAAGTCGGGGT-------TTTTAGCATGTATTAGCTCTAGAATTACCACGGTTA 374
|| ||| ||||| | |||||||||||||||||||||||||| ||||
Sbjct 333 CCCCCCGCGAGGGGGGTCAGCGCCCGTCGGCATGTATTAGCTCTAGAATTACCACAGTTA 274
Query 375 TCCATGTAGTA-AG----GTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGC 429
|||| |||| | || | | | |||| ||| |||||||||||||||||||||||||
Sbjct 273 TCCAAGTAGGAGAGGAGCGAGCGACCAAAGGAACCATAACTGATTTAATGAGCCATTCGC 214
Query 430 AGTTTCACTGTA-TAG-ATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAG 487
|||||||||||| || ||| |||||||||||||||||||||||||||||||||||
Sbjct 213 AGTTTCACTGTACCAGCCGTGC--GTACTTAGACATGCATGGCTTAATCTTTGAGACAAG 156
Query 488 CATATGACTACTGGCAG 504
|||||| ||||||||||
Sbjct 155 CATATG-CTACTGGCAG 140
>seq124273
Length=11251
Score = 80.6 bits (88), Expect = 8e-13
Identities = 85/111 (77%), Gaps = 1/111 (1%)
Strand=Plus/Plus
Query 5 TCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCC 64
||||| |||||||| | | ||| | ||||||| ||||| |||||||||||||| |
Sbjct 10732 TCATTTCAATTACAGGGCATTGAAGTGTCCTGTATTTTTATTTTTTGTCACTACCTCCTC 10791
Query 65 GTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAG 115
|||| || ||||||||||| | |||| |||| |||||||| || |||
Sbjct 10792 ATGTCAAGA-TGGGTAATTTGTGTACCTGTTGCCATCCTTGGACATGATAG 10841
>seq147171
Length=3200
Score = 77.0 bits (84), Expect = 1e-11
Identities = 68/84 (81%), Gaps = 1/84 (1%)
Strand=Plus/Minus
Query 76 GGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCC-TC 134
||| ||||||| |||||||||| | | ||||||||| ||| | ||||||||||||| ||
Sbjct 360 GGGGAATTTGCATGCCTGCTGCCATTCCTGGATGTGGCAGCAGCTTCTCAGGCTCCCTTC 301
Query 135 TCCGGAATCGAACCCTAATTCCCC 158
||| ||||| | || |||||||
Sbjct 300 TCCAGAATCATATCCGGATTCCCC 277
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1507975808000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |