Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013- 09-15] 160,500 sequences; 1,926,439,238 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq124007 100 2e-16 seq92079 95.1 1e-14 >seq124007 Length=20016 Score = 100 bits (110), Expect = 2e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 66050 GTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGA 66109 |||||||| || ||||| ||||||||||| ||||| || || |||| ||||| || Sbjct 15498 GTATACTCTACTATTTCTGTGCACAGATTGCTGCATTTGATCGTTCCCAGGTTCTGCTGG 15439 Query 66110 TTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGG 66169 || || || || || || | ||| ||||| | |||||| || || || ||||| || Sbjct 15438 TTGCTTTTCCGGTTACAGGAATCTTTGTAGAGCATGTATGGGGTACCTGTCTCTGTCTGC 15379 Query 66170 GACTCAATGATGGCGTGCCAAAG 66192 |||||||||||||| | |||||| Sbjct 15378 GACTCAATGATGGCATACCAAAG 15356 >seq92079 Length=13920 Score = 95.1 bits (104), Expect = 1e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 || |||||||| || | ||||| || |||||||| ||||| || ||| || |||||| Sbjct 4939 CAAGAGGTGCAGGTTCCAGAGGCTCGCTGTTTCTATGGCTTTCAAATTCTTATCGAGAAT 4880 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376 |||||||| ||||||||||| | || || ||||| |||||||| || Sbjct 4879 GTCCACTCAGAGATGTACAGCTTGCTAATAGATACATACATCAGAGA 4833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396790319720000