Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013- 09-15] 160,500 sequences; 1,926,439,238 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq67339 91.5 6e-13 seq21882 89.7 2e-12 >seq67339 Length=57924 Score = 91.5 bits (100), Expect = 6e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 349094 CTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCCGGCAAAGTGGAAGGTCTGGAGG 349153 || || ||||||||||| |||||| | | | |||||||||||||||||| | |||| Sbjct 32954 CTCGGAATGCCCAGGGTGACGTTCATCTCGCCTCTGCCGGCAAAGTGGAAGGTGTTGAGG 32895 Query 349154 GTCAACTGCGTGAGGGGCTCGCCGATGCACTGGCCCGCGAGGATGCCTACCATCTCGCCG 349213 |||| ||| ||| |||||| ||||||| |||| | || || | ||| ||| ||| || Sbjct 32894 GTCATCTGTGTGGAGGGCTCCCCGATGCTCTGGGCAGCCAGCAGGCCCACCGCCTCACCC 32835 Query 349214 GGC 349216 ||| Sbjct 32834 GGC 32832 >seq21882 Length=9437 Score = 89.7 bits (98), Expect = 2e-12 Identities = 117/159 (74%), Gaps = 6/159 (4%) Strand=Plus/Plus Query 448987 CTCGAGCAACATGGCGTAGGTCATGCGCGACGGGTAGGCATGCGGGTTCATGATGATGTC 449046 ||||| || |||| || ||||||||| || ||| || |||| ||||| | || ||||| Sbjct 6216 CTCGATCAGCATGCCGATGGTCATGCGTGATGGGAAGCCATGAGGGTTGAAGAGAATGTC 6275 Query 449047 GGGCGTCTCGCCGGCCGCGTTGAAGGGCATGTCCTCGGGGTTGACCACCAGGCCGTT--- 449103 || | ||| | || |||||||||||||||| || | ||| ||| | | | Sbjct 6276 AGGGACCATGCCACTCTCGCTGAAGGGCATGTCCTC--GGCCGGCCA-CAGCCTGCTCAG 6332 Query 449104 GACGCCCTTCTGGCCGTGGCGGCTGCAGAACTTGTCCCC 449142 || ||||||||| || ||||||||| |||||||||||| Sbjct 6333 GATGCCCTTCTGCCCATGGCGGCTGGCGAACTTGTCCCC 6371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2080347566579000