Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq5051 210 3e-52 seq430 150 3e-34 seq169 96.9 6e-18 >seq5051 Length=1763 Score = 210 bits (232), Expect = 3e-52 Identities = 167/200 (84%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1564 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 1623 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||| | | || | | | ||||||||||||||||||| ||| Sbjct 1624 CCTGTTATTGCCTCAAACTTCCTTGGCCTAAACGGCCATAGTCCCTCTAAGAAGCCGGCC 1683 Query 122 ACCAA--CCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 || | || | | |||| |||||||| | ||||||||||||||| ||||||| Sbjct 1684 GTGAAGGGATTCCTCCACGTAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAATT 1743 Query 180 AACCAGACAAATCACTCCAC 199 ||||||||||||| |||||| Sbjct 1744 AACCAGACAAATCGCTCCAC 1763 >seq430 Length=2252838 Score = 150 bits (166), Expect = 3e-34 Identities = 165/213 (77%), Gaps = 11/213 (5%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 |||||||| ||||| ||| |||| | ||| ||||||||||||||||||||||||||| | Sbjct 150786 GTCAGTGTTGCGCG--TGCAGCCCCGGACAGCTAAGGGCATCACAGACCTGTTATTGC-T 150842 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAACCA-T 130 ||| || | |||||| | |||| | ||||||||| |||| | | || ||| | Sbjct 150843 CAATCT-CGGGTGGCTGAACGCCACTTGTCCCTCTACGAAGTTGGGGGACGCCGACCGCT 150901 Query 131 AGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 | | | | | ||| |||||| | | ||||| |||||| |||||||||||||||| Sbjct 150902 TGGGGGTCGCGTAACTAGTTAGCATGCCAGAGTCTCCTTCGTTTTCGGAATTAACCAGAC 150961 Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCAC 220 ||||| ||||||||| ||||||||||||||||| Sbjct 150962 AAATCGCTCCACCAAATAAGAACGGCCATGCAC 150994 >seq169 Length=8616148 Score = 96.9 bits (106), Expect = 6e-18 Identities = 77/93 (83%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 160 TCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCA 219 ||| ||| |||||| |||| | |||||||||| || |||||||||||| ||||||||| Sbjct 7738084 TCTTGTTTGTTATCAGAATCAGCCAGACAAATTGCTGTACCAACTAAGAATGGCCATGCA 7738025 Query 220 CCACCACCCATAGAATCAAGAAAGAGCTATCAA 252 |||||||| || |||| || || ||||||||| Sbjct 7738024 CCACCACCTATGGAATTGAGGAAAAGCTATCAA 7737992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796310314359