Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04]
63,439 sequences; 2,073,344,508 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq5051 210 3e-52
seq430 150 3e-34
seq169 96.9 6e-18
>seq5051
Length=1763
Score = 210 bits (232), Expect = 3e-52
Identities = 167/200 (84%), Gaps = 2/200 (1%)
Strand=Plus/Plus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| || | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1564 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 1623
Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121
|||||||||||||||||||||| | | || | | | ||||||||||||||||||| |||
Sbjct 1624 CCTGTTATTGCCTCAAACTTCCTTGGCCTAAACGGCCATAGTCCCTCTAAGAAGCCGGCC 1683
Query 122 ACCAA--CCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179
|| | || | | |||| |||||||| | ||||||||||||||| |||||||
Sbjct 1684 GTGAAGGGATTCCTCCACGTAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAATT 1743
Query 180 AACCAGACAAATCACTCCAC 199
||||||||||||| ||||||
Sbjct 1744 AACCAGACAAATCGCTCCAC 1763
>seq430
Length=2252838
Score = 150 bits (166), Expect = 3e-34
Identities = 165/213 (77%), Gaps = 11/213 (5%)
Strand=Plus/Plus
Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74
|||||||| ||||| ||| |||| | ||| ||||||||||||||||||||||||||| |
Sbjct 150786 GTCAGTGTTGCGCG--TGCAGCCCCGGACAGCTAAGGGCATCACAGACCTGTTATTGC-T 150842
Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAACCA-T 130
||| || | |||||| | |||| | ||||||||| |||| | | || ||| |
Sbjct 150843 CAATCT-CGGGTGGCTGAACGCCACTTGTCCCTCTACGAAGTTGGGGGACGCCGACCGCT 150901
Query 131 AGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187
| | | | | ||| |||||| | | ||||| |||||| ||||||||||||||||
Sbjct 150902 TGGGGGTCGCGTAACTAGTTAGCATGCCAGAGTCTCCTTCGTTTTCGGAATTAACCAGAC 150961
Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCAC 220
||||| ||||||||| |||||||||||||||||
Sbjct 150962 AAATCGCTCCACCAAATAAGAACGGCCATGCAC 150994
>seq169
Length=8616148
Score = 96.9 bits (106), Expect = 6e-18
Identities = 77/93 (83%), Gaps = 0/93 (0%)
Strand=Plus/Minus
Query 160 TCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCA 219
||| ||| |||||| |||| | |||||||||| || |||||||||||| |||||||||
Sbjct 7738084 TCTTGTTTGTTATCAGAATCAGCCAGACAAATTGCTGTACCAACTAAGAATGGCCATGCA 7738025
Query 220 CCACCACCCATAGAATCAAGAAAGAGCTATCAA 252
|||||||| || |||| || || |||||||||
Sbjct 7738024 CCACCACCTATGGAATTGAGGAAAAGCTATCAA 7737992
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 796310314359
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |