Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq109 206 5e-51 seq45 185 1e-44 seq644 120 5e-25 seq121 96.9 6e-18 >seq109 Length=7372924 Score = 206 bits (228), Expect = 5e-51 Identities = 205/264 (78%), Gaps = 1/264 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 || |||||||||||||| |||||||||||| || |||||| |||| |||| |||||| | Sbjct 6326896 TCGTCAGTAGGGTAAAAGTAACCTGTCTCAGCACAGTCTAATCCCAACTCATGTTCCCCA 6326837 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 |||||||||||| |||| | | ||||| |||||| ||||||| |||| || | Sbjct 6326836 ATAGTGGGTGAACTGCCCAATGGCTGGTGAATTTTGCTTCACAATGATAGTAAGAACCAA 6326777 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 || ||||||||||||||||| || | ||||||||| || | |||||||||||||||| Sbjct 6326776 CACAGAAGGATCAAAAAGCAAACTCACCGTGAACGCTTTGCCGTCACAAGCCAGTTATCC 6326717 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 ||||||| ||||||||| ||||||| || | ||| | || | ||| ||| ||| Sbjct 6326716 CTGTGGTCACTTTTCTGACACCTCTTGCTTAAAACCCAAAAGGTCAGAAGAATC-TGAGG 6326658 Query 271 CCACACTTTCATGGTTTGTATTCA 294 || |||||||| | |||||||| Sbjct 6326657 CCCCACTTTCACTGCCTGTATTCA 6326634 >seq45 Length=5458328 Score = 185 bits (204), Expect = 1e-44 Identities = 130/148 (88%), Gaps = 4/148 (3%) Strand=Plus/Minus Query 47 ACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAAT 106 |||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||| Sbjct 2030616 ACTAACCTGTCTCACAACGGTCTAATCCCAGCTCACATTCCCTATTAGTGGGTGAACAAC 2030557 Query 107 CCAACGCT----TACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATC 162 |||||||| || |||||||||||| | || |||||||||||||||||||||||| Sbjct 2030556 CCAACGCTTGGCTAGTGAATTCTGCTTCACAACGACAGGAAGAGCCGACATCGAAGGATC 2030497 Query 163 AAAAAGCAACGTCGCTATGAACGCTTGG 190 ||||||| |||||||||||||| ||||| Sbjct 2030496 AAAAAGCGACGTCGCTATGAACACTTGG 2030469 >seq644 Length=561799 Score = 120 bits (132), Expect = 5e-25 Identities = 151/204 (74%), Gaps = 9/204 (4%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||| |||||||| ||| || |||| | |||| ||||||||| ||| || Sbjct 332452 TCATCAGTAGTGTAAAACTGTCCT--CTTATGATTGCCTAACCCCAGCTCATGTTTT-TA 332508 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||||||||||| ||| ||| |||||||| | | ||| |||| Sbjct 332509 TTAGTGGGTGAACAATCCAACACTTGATGAAGTCTGCTTC-----AAAATGAAAAGCCAG 332563 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||| ||||| |||| | || ||||| || ||||| | ||||| || |||||| Sbjct 332564 TATCTAAGGACTGAAAAATAGAGTTCCTATG-ACACTTGGTTTCCACAGTACATTTATCC 332622 Query 211 CTGTGGTAACTTTTCTGGCACCTC 234 || |||||||||||| |||||| Sbjct 332623 CTCCAGTAACTTTTCTGACACCTC 332646 >seq121 Length=10441667 Score = 96.9 bits (106), Expect = 6e-18 Identities = 113/154 (73%), Gaps = 8/154 (5%) Strand=Plus/Minus Query 89 TATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGAT--------AG 140 ||||||||| ||||||||| ||||| | |||||||||||| |||| | Sbjct 470101 TATTAGTGGATGAACAATCGAACGCATCATGAATTCTGCTTCACAATGACTTTTCACAAT 470042 Query 141 GAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAG 200 ||| || ||||| ||||||| |||||| || | |||||| | |||| | ||| ||| Sbjct 470041 GAATAGTCGACACTGAAGGATTAAAAAGTGACATTACTATGAGGGATTGGATACCATAAG 469982 Query 201 CCAGTTATCCCTGTGGTAACTTTTCTGGCACCTC 234 ||| ||||||||||| | ||||||| |||||| Sbjct 469981 TCAGCTATCCCTGTGGCGATTTTTCTGACACCTC 469948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 853857977184