Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04]
63,439 sequences; 2,073,344,508 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq109 206 5e-51
seq45 185 1e-44
seq644 120 5e-25
seq121 96.9 6e-18
>seq109
Length=7372924
Score = 206 bits (228), Expect = 5e-51
Identities = 205/264 (78%), Gaps = 1/264 (0%)
Strand=Plus/Minus
Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90
|| |||||||||||||| |||||||||||| || |||||| |||| |||| |||||| |
Sbjct 6326896 TCGTCAGTAGGGTAAAAGTAACCTGTCTCAGCACAGTCTAATCCCAACTCATGTTCCCCA 6326837
Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150
|||||||||||| |||| | | ||||| |||||| ||||||| |||| || |
Sbjct 6326836 ATAGTGGGTGAACTGCCCAATGGCTGGTGAATTTTGCTTCACAATGATAGTAAGAACCAA 6326777
Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210
|| ||||||||||||||||| || | ||||||||| || | ||||||||||||||||
Sbjct 6326776 CACAGAAGGATCAAAAAGCAAACTCACCGTGAACGCTTTGCCGTCACAAGCCAGTTATCC 6326717
Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270
||||||| ||||||||| ||||||| || | ||| | || | ||| ||| |||
Sbjct 6326716 CTGTGGTCACTTTTCTGACACCTCTTGCTTAAAACCCAAAAGGTCAGAAGAATC-TGAGG 6326658
Query 271 CCACACTTTCATGGTTTGTATTCA 294
|| |||||||| | ||||||||
Sbjct 6326657 CCCCACTTTCACTGCCTGTATTCA 6326634
>seq45
Length=5458328
Score = 185 bits (204), Expect = 1e-44
Identities = 130/148 (88%), Gaps = 4/148 (3%)
Strand=Plus/Minus
Query 47 ACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAAT 106
|||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 2030616 ACTAACCTGTCTCACAACGGTCTAATCCCAGCTCACATTCCCTATTAGTGGGTGAACAAC 2030557
Query 107 CCAACGCT----TACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATC 162
|||||||| || |||||||||||| | || ||||||||||||||||||||||||
Sbjct 2030556 CCAACGCTTGGCTAGTGAATTCTGCTTCACAACGACAGGAAGAGCCGACATCGAAGGATC 2030497
Query 163 AAAAAGCAACGTCGCTATGAACGCTTGG 190
||||||| |||||||||||||| |||||
Sbjct 2030496 AAAAAGCGACGTCGCTATGAACACTTGG 2030469
>seq644
Length=561799
Score = 120 bits (132), Expect = 5e-25
Identities = 151/204 (74%), Gaps = 9/204 (4%)
Strand=Plus/Plus
Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90
|||||||||| |||||||| ||| || |||| | |||| ||||||||| ||| ||
Sbjct 332452 TCATCAGTAGTGTAAAACTGTCCT--CTTATGATTGCCTAACCCCAGCTCATGTTTT-TA 332508
Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150
||||||||||||||||||||| ||| ||| |||||||| | | ||| ||||
Sbjct 332509 TTAGTGGGTGAACAATCCAACACTTGATGAAGTCTGCTTC-----AAAATGAAAAGCCAG 332563
Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210
||| ||||| |||| | || ||||| || ||||| | ||||| || ||||||
Sbjct 332564 TATCTAAGGACTGAAAAATAGAGTTCCTATG-ACACTTGGTTTCCACAGTACATTTATCC 332622
Query 211 CTGTGGTAACTTTTCTGGCACCTC 234
|| |||||||||||| ||||||
Sbjct 332623 CTCCAGTAACTTTTCTGACACCTC 332646
>seq121
Length=10441667
Score = 96.9 bits (106), Expect = 6e-18
Identities = 113/154 (73%), Gaps = 8/154 (5%)
Strand=Plus/Minus
Query 89 TATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGAT--------AG 140
||||||||| ||||||||| ||||| | |||||||||||| |||| |
Sbjct 470101 TATTAGTGGATGAACAATCGAACGCATCATGAATTCTGCTTCACAATGACTTTTCACAAT 470042
Query 141 GAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAG 200
||| || ||||| ||||||| |||||| || | |||||| | |||| | ||| |||
Sbjct 470041 GAATAGTCGACACTGAAGGATTAAAAAGTGACATTACTATGAGGGATTGGATACCATAAG 469982
Query 201 CCAGTTATCCCTGTGGTAACTTTTCTGGCACCTC 234
||| ||||||||||| | ||||||| ||||||
Sbjct 469981 TCAGCTATCCCTGTGGCGATTTTTCTGACACCTC 469948
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 853857977184
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |