Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04]
63,439 sequences; 2,073,344,508 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq118 316 7e-84
seq29 284 4e-74
seq489 280 5e-73
seq121 264 4e-68
seq259 242 1e-61
seq84 152 2e-34
seq223 82.4 2e-13
seq65 77.0 1e-11
>seq118
Length=4586478
Score = 316 bits (350), Expect = 7e-84
Identities = 249/297 (84%), Gaps = 2/297 (1%)
Strand=Plus/Plus
Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296
||||||||||||||||| |||||| ||| ||||| | | ||| |||| |||||||
Sbjct 3814821 CTCCCACTTATTCTACAACTCTCATGTCTCTTCACGGTGCCCTACTGGAGTTAAGCTCAG 3814880
Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356
|||||||||||||||| ||||||||| ||||| || ||| ||||||||||||||| || |
Sbjct 3814881 CAGGGTCTTCTTTCCCTGCTGATTCCACCAAGGCCATTCACTTGGCTGTGGTTTCCCTGG 3814940
Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416
|||| |||| ||||||||||||||| | | | |||||||||| | ||||||||| ||||
Sbjct 3814941 ATAGCGGATATGGACAGTGGGAATCTGGCTCACCCATTCATGCACCTCACTAATTGGATG 3815000
Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476
| || ||||||||||||||| | |||||||||||||| |||| |||||| || |||
Sbjct 3815001 ATGACGCATTTGGCTACCTT--GCGAGTCATAGTTACTTTCGCCATTTACCTGCCCTTCA 3815058
Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533
|||||||| |||||||||||||||||||||||| |||||||||||| | ||||||
Sbjct 3815059 TTGAATTTTCTCACTTTGACATTCAGAGCACTGGCCAGAAATCACATCACATCAACA 3815115
>seq29
Length=11775631
Score = 284 bits (314), Expect = 4e-74
Identities = 242/297 (81%), Gaps = 5/297 (2%)
Strand=Plus/Plus
Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296
|||||||||||| |||||||||| | || |||| | || ||||||||||||||
Sbjct 4557721 CTCCCACTTATTATACACCTCTCCAATCTCTTCATTGTTCCAGAATAGAGTCAAGCTCAG 4557780
Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356
|| ||||| ||||| | ||||||| ||||| | ||||||||||||||||||| ||| |
Sbjct 4557781 CAAAGTCTTTTTTCCTCACTGATTCTGCCAAATCTGTTCCCTTGGCTGTGGTTTTGCTGG 4557840
Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416
||| ||| ||||||| ||||||| ||| |||||||||||| |||| |||| |||||
Sbjct 4557841 ATACTAG----GGACAGTAGGAATCTTGTTCATCCATTCATGCATGTCAGTAAT-AGATG 4557895
Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476
||||||||||||||||||||||| |||| |||||||| | | |||||| | | |
Sbjct 4557896 ACGAGGCATTTGGCTACCTTAAGGGAGTTATAGTTACGTTCATCATTTACCTGTGTTGCA 4557955
Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533
||||||||||||||||||| |||||||||||| || |||||||||| ||||||||||
Sbjct 4557956 TTGAATTTCTTCACTTTGATATTCAGAGCACTAGGTAGAAATCACACTGCGTCAACA 4558012
>seq489
Length=1143573
Score = 280 bits (310), Expect = 5e-73
Identities = 241/297 (81%), Gaps = 2/297 (1%)
Strand=Plus/Minus
Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296
|||||||||||| ||||||||||| || ||||| | | || ||||| ||| | ||
Sbjct 464770 CTCCCACTTATTTTACACCTCTCATTTCTCTTCACTGTGCCAGATTAGAGAAAAGGTGAA 464711
Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356
|| | |||||| ||| ||||||||| |||||||| ||| ||||| | | | || | | |
Sbjct 464710 CAAG--CTTCTTCCCCTGCTGATTCCACCAAGCCCATTCTCTTGGATATAGGTTTGGTGG 464653
Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416
||||||| ||||||||||||||||||| || ||||||||||| || |||||| |||||||
Sbjct 464652 ATAGTAGGTAGGGACAGTGGGAATCTCATTCATCCATTCATGTGCATCACTACTTAGATG 464593
Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476
| |||||| ||| |||| |||| | | |||||||||||||| | |||||| |||||| |
Sbjct 464592 ATGAGGCACTTGTCTACTTTAAAATAATCATAGTTACTCCCCCGATTTACCAGCGCTTTG 464533
Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533
||||||| |||| ||||| |||| | | ||||||||||||||||||| | |||||||
Sbjct 464532 TTGAATTGCTTCGCTTTGGCATTTAAAACACTGGGCAGAAATCACATCGTGTCAACA 464476
>seq121
Length=10441667
Score = 264 bits (292), Expect = 4e-68
Identities = 242/304 (80%), Gaps = 9/304 (3%)
Strand=Plus/Minus
Query 238 TCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGAC----TAGAGTCAAGCT 293
||||||||||||||||||| | | ||| ||||| | | ||| ||||||||||||
Sbjct 469563 TCCCACTTATTCTACACCTTTAATGTCTCTTCACTT-GCCAGACAAGATAGAGTCAAGCT 469505
Query 294 CAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGC 353
||||||||| ||||||| | ||||||| |||| ||| ||||||||||||||||||| |
Sbjct 469504 CAACAGGGTTCACTTTCCCAGGTGATTCCTCCAACCCCATTCCCTTGGCTGTGGTTTCAC 469445
Query 354 TAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAG 413
| || || || || | ||||||||||| || || ||||||| ||||| | ||||||||||
Sbjct 469444 TGGAGAGAAGGTAAGTACAGTGGGAATATCATTTATCCATTTATGCGGGACACTAATTAG 469385
Query 414 ATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACT----CCCGCCGTTTACCCG 469
|||| |||||| ||||| ||||| |||||| |||||||| ||| || || || |
Sbjct 469384 ATGAGGAGGCACTTGGCCTCCTTAGCAGAGTCCTAGTTACTCCTGCCCACCATTCACTCA 469325
Query 470 CGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTC 529
||| |||||||||||||| | || |||||||||||||||||||||||||| | ||
Sbjct 469324 TGCTGCCCTGAATTTCTTCACTCTAACCTTCAGAGCACTGGGCAGAAATCACATCACATC 469265
Query 530 AACA 533
||||
Sbjct 469264 AACA 469261
>seq259
Length=2850146
Score = 242 bits (268), Expect = 1e-61
Identities = 148/157 (94%), Gaps = 0/157 (0%)
Strand=Plus/Minus
Query 377 GAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTT 436
|||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1829511 GAATCTCGTTCATCCATTCATGCGGGTCACTAATTAGATGACGAGGCATTTGGCTACCTT 1829452
Query 437 AAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGAC 496
||||||||||||||||||||| |||||||| | ||||| ||||||||||||||||||||
Sbjct 1829451 AAGAGAGTCATAGTTACTCCCACCGTTTACTCCCGCTTCATTGAATTTCTTCACTTTGAC 1829392
Query 497 ATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533
|||||||||||||||||| |||||||| |||||||||
Sbjct 1829391 ATTCAGAGCACTGGGCAGCAATCACATCGCGTCAACA 1829355
>seq84
Length=14246498
Score = 152 bits (168), Expect = 2e-34
Identities = 208/286 (73%), Gaps = 7/286 (2%)
Strand=Plus/Minus
Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTC-GGACTAGAGTCAAGCTCA 295
||||| |||| |||| || || || ||||| | | | || || ||||| | |||
Sbjct 7541248 CTCCCGCTTAATCTATACTTCCTGTTTCTCTTCACCATGCCAGGTTTACAGTCAGGTTCA 7541189
Query 296 ACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTA 355
|||| || |||||| ||| |||| |||||||| ||||||||||||||||||| |
Sbjct 7541188 ACAGAGTGTTCTTTACCCAAAGATTTTGCCAAGCCA-TTCCCTTGGCTGTGGTTTCATCA 7541130
Query 356 GATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGAT 415
| || || | |||| | | ||| || || | | ||||| | |||| |||||| |||
Sbjct 7541129 GGTAATAAA----GACAATAGCAATATCATTCAGCTATTCACACACGTCCCTAATTCGAT 7541074
Query 416 GACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCC-GCCGTTTACCCGCGCTT 474
| ||| |||||| ||||||||| |||||||||||||| ||| | ||||| |||
Sbjct 7541073 GGTGAGACATTTGACTACCTTAACAGAGTCATAGTTACACCCATCAATTTACTTAAACTT 7541014
Query 475 GGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCA 520
| | ||||||| |||||||||||| ||||||||| ||||||
Sbjct 7541013 CTGTATGTATCTTCACATTGACATTCAGATCACTGGGCAAAAATCA 7540968
>seq223
Length=3495689
Score = 82.4 bits (90), Expect = 2e-13
Identities = 96/125 (77%), Gaps = 6/125 (5%)
Strand=Plus/Plus
Query 285 AGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCG-CCAAGCCCGTTCCCTTGGCT 343
||| ||||||||| | ||||||||| |||||| | || ||| ||| |||||| |
Sbjct 2949982 AGTTAAGCTCAACCAG---TTCTTTCCCTGCTGATAACTTCCCAGCTAGTTACCTTGGTT 2950038
Query 344 GTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGT 403
|| |||| | ||| ||| ||||||||||||||||||| || |||||||| || || |
Sbjct 2950039 GTA-TTTCA-TGGATCCTAGCTAGGGACAGTGGGAATCTCCTTCATCCATTCGTGGGCAT 2950096
Query 404 CACTA 408
|||||
Sbjct 2950097 CACTA 2950101
>seq65
Length=9174866
Score = 77.0 bits (84), Expect = 1e-11
Identities = 60/72 (83%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 462 TTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCAC 521
||||| || ||| ||||||||| |||||| |||||||||||||| ||||||| ||||
Sbjct 3357921 TTTACTCGTACTTCAGTGAATTTCTGCACTTTAACATTCAGAGCACTAGGCAGAATTCAC 3357980
Query 522 ATTGCGTCAACA 533
|| | |||||||
Sbjct 3357981 ATAGTGTCAACA 3357992
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1634162645472
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |