Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq118 316 7e-84 seq29 284 4e-74 seq489 280 5e-73 seq121 264 4e-68 seq259 242 1e-61 seq84 152 2e-34 seq223 82.4 2e-13 seq65 77.0 1e-11 >seq118 Length=4586478 Score = 316 bits (350), Expect = 7e-84 Identities = 249/297 (84%), Gaps = 2/297 (1%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||||||||||||| |||||| ||| ||||| | | ||| |||| ||||||| Sbjct 3814821 CTCCCACTTATTCTACAACTCTCATGTCTCTTCACGGTGCCCTACTGGAGTTAAGCTCAG 3814880 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||||| ||||||||| ||||| || ||| ||||||||||||||| || | Sbjct 3814881 CAGGGTCTTCTTTCCCTGCTGATTCCACCAAGGCCATTCACTTGGCTGTGGTTTCCCTGG 3814940 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 |||| |||| ||||||||||||||| | | | |||||||||| | ||||||||| |||| Sbjct 3814941 ATAGCGGATATGGACAGTGGGAATCTGGCTCACCCATTCATGCACCTCACTAATTGGATG 3815000 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476 | || ||||||||||||||| | |||||||||||||| |||| |||||| || ||| Sbjct 3815001 ATGACGCATTTGGCTACCTT--GCGAGTCATAGTTACTTTCGCCATTTACCTGCCCTTCA 3815058 Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||| |||||||||||||||||||||||| |||||||||||| | |||||| Sbjct 3815059 TTGAATTTTCTCACTTTGACATTCAGAGCACTGGCCAGAAATCACATCACATCAACA 3815115 >seq29 Length=11775631 Score = 284 bits (314), Expect = 4e-74 Identities = 242/297 (81%), Gaps = 5/297 (2%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||||| |||||||||| | || |||| | || |||||||||||||| Sbjct 4557721 CTCCCACTTATTATACACCTCTCCAATCTCTTCATTGTTCCAGAATAGAGTCAAGCTCAG 4557780 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 || ||||| ||||| | ||||||| ||||| | ||||||||||||||||||| ||| | Sbjct 4557781 CAAAGTCTTTTTTCCTCACTGATTCTGCCAAATCTGTTCCCTTGGCTGTGGTTTTGCTGG 4557840 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||| ||| ||||||| ||||||| ||| |||||||||||| |||| |||| ||||| Sbjct 4557841 ATACTAG----GGACAGTAGGAATCTTGTTCATCCATTCATGCATGTCAGTAAT-AGATG 4557895 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476 ||||||||||||||||||||||| |||| |||||||| | | |||||| | | | Sbjct 4557896 ACGAGGCATTTGGCTACCTTAAGGGAGTTATAGTTACGTTCATCATTTACCTGTGTTGCA 4557955 Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||| |||||||||||| || |||||||||| |||||||||| Sbjct 4557956 TTGAATTTCTTCACTTTGATATTCAGAGCACTAGGTAGAAATCACACTGCGTCAACA 4558012 >seq489 Length=1143573 Score = 280 bits (310), Expect = 5e-73 Identities = 241/297 (81%), Gaps = 2/297 (1%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||||| ||||||||||| || ||||| | | || ||||| ||| | || Sbjct 464770 CTCCCACTTATTTTACACCTCTCATTTCTCTTCACTGTGCCAGATTAGAGAAAAGGTGAA 464711 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 || | |||||| ||| ||||||||| |||||||| ||| ||||| | | | || | | | Sbjct 464710 CAAG--CTTCTTCCCCTGCTGATTCCACCAAGCCCATTCTCTTGGATATAGGTTTGGTGG 464653 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||| ||||||||||||||||||| || ||||||||||| || |||||| ||||||| Sbjct 464652 ATAGTAGGTAGGGACAGTGGGAATCTCATTCATCCATTCATGTGCATCACTACTTAGATG 464593 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476 | |||||| ||| |||| |||| | | |||||||||||||| | |||||| |||||| | Sbjct 464592 ATGAGGCACTTGTCTACTTTAAAATAATCATAGTTACTCCCCCGATTTACCAGCGCTTTG 464533 Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||| |||| ||||| |||| | | ||||||||||||||||||| | ||||||| Sbjct 464532 TTGAATTGCTTCGCTTTGGCATTTAAAACACTGGGCAGAAATCACATCGTGTCAACA 464476 >seq121 Length=10441667 Score = 264 bits (292), Expect = 4e-68 Identities = 242/304 (80%), Gaps = 9/304 (3%) Strand=Plus/Minus Query 238 TCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGAC----TAGAGTCAAGCT 293 ||||||||||||||||||| | | ||| ||||| | | ||| |||||||||||| Sbjct 469563 TCCCACTTATTCTACACCTTTAATGTCTCTTCACTT-GCCAGACAAGATAGAGTCAAGCT 469505 Query 294 CAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGC 353 ||||||||| ||||||| | ||||||| |||| ||| ||||||||||||||||||| | Sbjct 469504 CAACAGGGTTCACTTTCCCAGGTGATTCCTCCAACCCCATTCCCTTGGCTGTGGTTTCAC 469445 Query 354 TAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAG 413 | || || || || | ||||||||||| || || ||||||| ||||| | |||||||||| Sbjct 469444 TGGAGAGAAGGTAAGTACAGTGGGAATATCATTTATCCATTTATGCGGGACACTAATTAG 469385 Query 414 ATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACT----CCCGCCGTTTACCCG 469 |||| |||||| ||||| ||||| |||||| |||||||| ||| || || || | Sbjct 469384 ATGAGGAGGCACTTGGCCTCCTTAGCAGAGTCCTAGTTACTCCTGCCCACCATTCACTCA 469325 Query 470 CGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTC 529 ||| |||||||||||||| | || |||||||||||||||||||||||||| | || Sbjct 469324 TGCTGCCCTGAATTTCTTCACTCTAACCTTCAGAGCACTGGGCAGAAATCACATCACATC 469265 Query 530 AACA 533 |||| Sbjct 469264 AACA 469261 >seq259 Length=2850146 Score = 242 bits (268), Expect = 1e-61 Identities = 148/157 (94%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 377 GAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTT 436 |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1829511 GAATCTCGTTCATCCATTCATGCGGGTCACTAATTAGATGACGAGGCATTTGGCTACCTT 1829452 Query 437 AAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGAC 496 ||||||||||||||||||||| |||||||| | ||||| |||||||||||||||||||| Sbjct 1829451 AAGAGAGTCATAGTTACTCCCACCGTTTACTCCCGCTTCATTGAATTTCTTCACTTTGAC 1829392 Query 497 ATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||||| |||||||| ||||||||| Sbjct 1829391 ATTCAGAGCACTGGGCAGCAATCACATCGCGTCAACA 1829355 >seq84 Length=14246498 Score = 152 bits (168), Expect = 2e-34 Identities = 208/286 (73%), Gaps = 7/286 (2%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTC-GGACTAGAGTCAAGCTCA 295 ||||| |||| |||| || || || ||||| | | | || || ||||| | ||| Sbjct 7541248 CTCCCGCTTAATCTATACTTCCTGTTTCTCTTCACCATGCCAGGTTTACAGTCAGGTTCA 7541189 Query 296 ACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTA 355 |||| || |||||| ||| |||| |||||||| ||||||||||||||||||| | Sbjct 7541188 ACAGAGTGTTCTTTACCCAAAGATTTTGCCAAGCCA-TTCCCTTGGCTGTGGTTTCATCA 7541130 Query 356 GATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGAT 415 | || || | |||| | | ||| || || | | ||||| | |||| |||||| ||| Sbjct 7541129 GGTAATAAA----GACAATAGCAATATCATTCAGCTATTCACACACGTCCCTAATTCGAT 7541074 Query 416 GACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCC-GCCGTTTACCCGCGCTT 474 | ||| |||||| ||||||||| |||||||||||||| ||| | ||||| ||| Sbjct 7541073 GGTGAGACATTTGACTACCTTAACAGAGTCATAGTTACACCCATCAATTTACTTAAACTT 7541014 Query 475 GGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCA 520 | | ||||||| |||||||||||| ||||||||| |||||| Sbjct 7541013 CTGTATGTATCTTCACATTGACATTCAGATCACTGGGCAAAAATCA 7540968 >seq223 Length=3495689 Score = 82.4 bits (90), Expect = 2e-13 Identities = 96/125 (77%), Gaps = 6/125 (5%) Strand=Plus/Plus Query 285 AGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCG-CCAAGCCCGTTCCCTTGGCT 343 ||| ||||||||| | ||||||||| |||||| | || ||| ||| |||||| | Sbjct 2949982 AGTTAAGCTCAACCAG---TTCTTTCCCTGCTGATAACTTCCCAGCTAGTTACCTTGGTT 2950038 Query 344 GTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGT 403 || |||| | ||| ||| ||||||||||||||||||| || |||||||| || || | Sbjct 2950039 GTA-TTTCA-TGGATCCTAGCTAGGGACAGTGGGAATCTCCTTCATCCATTCGTGGGCAT 2950096 Query 404 CACTA 408 ||||| Sbjct 2950097 CACTA 2950101 >seq65 Length=9174866 Score = 77.0 bits (84), Expect = 1e-11 Identities = 60/72 (83%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 462 TTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCAC 521 ||||| || ||| ||||||||| |||||| |||||||||||||| ||||||| |||| Sbjct 3357921 TTTACTCGTACTTCAGTGAATTTCTGCACTTTAACATTCAGAGCACTAGGCAGAATTCAC 3357980 Query 522 ATTGCGTCAACA 533 || | ||||||| Sbjct 3357981 ATAGTGTCAACA 3357992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634162645472