Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq7394 434 3e-119 >seq7394 Length=1284 Score = 434 bits (480), Expect = 3e-119 Identities = 334/389 (86%), Gaps = 12/389 (3%) Strand=Plus/Plus Query 125 AGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCC 184 ||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||| Sbjct 1 AGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTTACCACCATGGTAGGCC 60 Query 185 ACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC-AA 243 ||||||||||||||||||||||||||||||||||||||||||| | ||||| || | || Sbjct 61 ACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGATGCGTCGCCAGCACAAA 120 Query 244 GGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGC--CCCGAAG----GGCGTT 297 ||||||||||| ||| |||||| |||||||| || |||| | | || |||| Sbjct 121 GGCCATGCGATCCGTCGAGTTATCATGAATCATCA--GAGCAACGGGCAGAGCCCGCGTC 178 Query 298 GGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAGCT 356 | ||||||||||||||| | ||||||| ||||||||||||| | ||| ||||||||| Sbjct 179 GACCTTTTATCTAATAAATGCGTCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTAGCT 238 Query 357 CTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTA 416 |||||||||| |||||||||| ||||| || ||| |||||| |||| |||||||||||| Sbjct 239 CTAGAATTACTACGGTTATCCGAGTAGT-AGTTACCATCAAACAAACTATAACTGATTTA 297 Query 417 ATGAGCCATTCGCAGTTTCACTGTAT-AGATTGCTTATACTTAGACATGCATGGCTTAAT 475 ||||||||||||||||||||| || | | ||| | ||||||| |||||||||||||||| Sbjct 298 ATGAGCCATTCGCAGTTTCACAGTCTGAATTTGTTCATACTTACACATGCATGGCTTAAT 357 Query 476 CTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||| Sbjct 358 CTTTGAGACAAGCATATGACTACTGGCAG 386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1509441817344