Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04]
63,439 sequences; 2,073,344,508 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq93 100 2e-16
seq514 98.7 8e-16
>seq93
Length=2374459
Score = 100 bits (110), Expect = 2e-16
Identities = 108/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 66050 GTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGA 66109
|||||||| || ||||| ||||||||||| ||||| || || |||| ||||| ||
Sbjct 51184 GTATACTCTACTATTTCTGTGCACAGATTGCTGCATTTGATCGTTCCCAGGTTCTGCTGG 51243
Query 66110 TTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGG 66169
|| || || || || || | ||| ||||| | |||||| || || || ||||| ||
Sbjct 51244 TTGCTTTTCCGGTTACAGGAATCTTTGTAGAGCATGTATGGGGTACCTGTCTCTGTCTGC 51303
Query 66170 GACTCAATGATGGCGTGCCAAAG 66192
|||||||||||||| | ||||||
Sbjct 51304 GACTCAATGATGGCATACCAAAG 51326
>seq514
Length=1022489
Score = 98.7 bits (108), Expect = 8e-16
Identities = 86/107 (80%), Gaps = 0/107 (0%)
Strand=Plus/Minus
Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329
|| |||||||| || | ||||| || |||||||| ||||| || ||| || ||||||
Sbjct 289608 CAAGAGGTGCAGGTTCCAGAGGCTCGCTGTTTCTATGGCTTTCAAATTCTTATCGAGAAT 289549
Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376
|||||||| |||||||||||| | || || ||||| |||||||| ||
Sbjct 289548 GTCCACTCAGAGATGTACAGTTTGCTAATAGATACATACATCAGAGA 289502
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397260615206960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |