Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04]
63,439 sequences; 2,073,344,508 total letters
Query= NC_027867.1
Length=651523
Score E
Sequences producing significant alignments: (Bits) Value
seq286 91.5 6e-13
seq600 89.7 2e-12
>seq286
Length=1434331
Score = 91.5 bits (100), Expect = 6e-13
Identities = 94/123 (76%), Gaps = 0/123 (0%)
Strand=Plus/Minus
Query 349094 CTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCCGGCAAAGTGGAAGGTCTGGAGG 349153
|| || ||||||||||| |||||| | | | |||||||||||||||||| | ||||
Sbjct 1148525 CTCGGAATGCCCAGGGTGACGTTCATCTCGCCTCTGCCGGCAAAGTGGAAGGTGTTGAGG 1148466
Query 349154 GTCAACTGCGTGAGGGGCTCGCCGATGCACTGGCCCGCGAGGATGCCTACCATCTCGCCG 349213
|||| ||| ||| |||||| ||||||| |||| | || || | ||| ||| ||| ||
Sbjct 1148465 GTCATCTGTGTGGAGGGCTCCCCGATGCTCTGGGCAGCCAGCAGGCCCACCGCCTCACCC 1148406
Query 349214 GGC 349216
|||
Sbjct 1148405 GGC 1148403
>seq600
Length=1317030
Score = 89.7 bits (98), Expect = 2e-12
Identities = 117/159 (74%), Gaps = 6/159 (4%)
Strand=Plus/Plus
Query 448987 CTCGAGCAACATGGCGTAGGTCATGCGCGACGGGTAGGCATGCGGGTTCATGATGATGTC 449046
||| | || |||| || ||||||||| |||||| || |||| ||||| | | |||||
Sbjct 1249513 CTCAATCAGCATGCCGATGGTCATGCGTGACGGGAAGCCATGAGGGTTGAACAGAATGTC 1249572
Query 449047 GGGCGTCTCGCCGGCCGCGTTGAAGGGCATGTCCTCGGGGTTGACCACCAGGCCGTT--- 449103
|| | ||| | || ||||||||||||| || || || ||| ||| | | |
Sbjct 1249573 AGGGACCATGCCACTCTCGCTGAAGGGCATGTCTTC--GGCTGGCCA-CAGCCTGCTCAG 1249629
Query 449104 GACGCCCTTCTGGCCGTGGCGGCTGCAGAACTTGTCCCC 449142
|| ||||||||| |||||||||||| ||||||||||||
Sbjct 1249630 GATGCCCTTCTGTCCGTGGCGGCTGGCGAACTTGTCCCC 1249668
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2083003369267322
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |