Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq286 91.5 6e-13 seq600 89.7 2e-12 >seq286 Length=1434331 Score = 91.5 bits (100), Expect = 6e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 349094 CTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCCGGCAAAGTGGAAGGTCTGGAGG 349153 || || ||||||||||| |||||| | | | |||||||||||||||||| | |||| Sbjct 1148525 CTCGGAATGCCCAGGGTGACGTTCATCTCGCCTCTGCCGGCAAAGTGGAAGGTGTTGAGG 1148466 Query 349154 GTCAACTGCGTGAGGGGCTCGCCGATGCACTGGCCCGCGAGGATGCCTACCATCTCGCCG 349213 |||| ||| ||| |||||| ||||||| |||| | || || | ||| ||| ||| || Sbjct 1148465 GTCATCTGTGTGGAGGGCTCCCCGATGCTCTGGGCAGCCAGCAGGCCCACCGCCTCACCC 1148406 Query 349214 GGC 349216 ||| Sbjct 1148405 GGC 1148403 >seq600 Length=1317030 Score = 89.7 bits (98), Expect = 2e-12 Identities = 117/159 (74%), Gaps = 6/159 (4%) Strand=Plus/Plus Query 448987 CTCGAGCAACATGGCGTAGGTCATGCGCGACGGGTAGGCATGCGGGTTCATGATGATGTC 449046 ||| | || |||| || ||||||||| |||||| || |||| ||||| | | ||||| Sbjct 1249513 CTCAATCAGCATGCCGATGGTCATGCGTGACGGGAAGCCATGAGGGTTGAACAGAATGTC 1249572 Query 449047 GGGCGTCTCGCCGGCCGCGTTGAAGGGCATGTCCTCGGGGTTGACCACCAGGCCGTT--- 449103 || | ||| | || ||||||||||||| || || || ||| ||| | | | Sbjct 1249573 AGGGACCATGCCACTCTCGCTGAAGGGCATGTCTTC--GGCTGGCCA-CAGCCTGCTCAG 1249629 Query 449104 GACGCCCTTCTGGCCGTGGCGGCTGCAGAACTTGTCCCC 449142 || ||||||||| |||||||||||| |||||||||||| Sbjct 1249630 GATGCCCTTCTGTCCGTGGCGGCTGGCGAACTTGTCCCC 1249668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2083003369267322