Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq6767 104 1e-20 seq44 80.6 1e-13 seq3 80.6 1e-13 seq47 77.0 2e-12 seq35 73.4 2e-11 seq11 73.4 2e-11 >seq6767 Length=1468 Score = 104 bits (114), Expect = 1e-20 Identities = 93/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| || ||| |||| ||| |||| ||||| |||| Sbjct 69 GAACCCAAAGACTTTGGTTTCCCGGAAGCTGCCCGGCGGGTCATGGGAATAACGCCGCCG 128 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| | ||||||||| ||||| ||| ||||||||||||||||||||||||||| Sbjct 129 CATCGCCAGTCGGCATCGTTTATGGTCGGAACTACGACGGTATCTGATCGTCTTCGA 185 >seq44 Length=17007452 Score = 80.6 bits (88), Expect = 1e-13 Identities = 86/114 (75%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| ||| | ||| |||| |||| |||| ||||| | || Sbjct 2557881 GAACCCAAAGACTTTGGTTTTCCAGAAGTTGCCCAGCGGGTCATGGAAATAACGCCACCA 2557822 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTT 114 ||| | |||| |||| ||||| ||| | |||||||| ||||||| ||||||| Sbjct 2557821 CATCACCAGTCAGCATCGTTTATGGTCAGAACTACGACAGTATCTGGTCGTCTT 2557768 >seq3 Length=52403620 Score = 80.6 bits (88), Expect = 1e-13 Identities = 88/117 (75%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||||||||||||||| | ||| |||| || | ||| ||| || | | Sbjct 44770757 GAACCCAAAGACTTTGATTTCCCAGAAGCTGCCCAGAGGGTCTTGGGAATAGCACCTCTG 44770698 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| | | ||| ||| ||||| |||| |||| |||||||||||||||||||||| Sbjct 44770697 AATCACCAATCGACATCGTTTATGGTTGGAACTAGGACGGTATCTGATCGTCTTCGA 44770641 >seq47 Length=16672844 Score = 77.0 bits (84), Expect = 2e-12 Identities = 87/117 (74%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||| |||||||| |||| | ||| |||| ||| |||| |||| |||| Sbjct 12861822 GAACCCAGAGACTTTGGTTTCCTGGAAGCTGCCAGGCGGGTCATGGGAATAATGCCGCCG 12861763 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| | ||| ||||||||||| |||| ||||| |||||| |||||||||||| Sbjct 12861762 CATCGCCAGTTGGCATAGTTTATGGTTGGAACTACCGAGGTATCGGATCGTCTTCGA 12861706 >seq35 Length=23239271 Score = 73.4 bits (80), Expect = 2e-11 Identities = 85/115 (74%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 3 ACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCGA 62 ||||||||||||| |||| | ||| |||| | | |||| | |||| |||| | Sbjct 12004360 ACCCAAAGACTTTCGTTTCCCAGAAGCTGCCCGGTGGGTCATTAGAATAATGCCGCCACA 12004301 Query 63 TCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 || | ||| ||||| ||||| |||| || |||| ||||||||||| ||||||| Sbjct 12004300 TCGCCAGTTGGCATCGTTTATGGTTGGAACGACGATGGTATCTGATCATCTTCGA 12004246 >seq11 Length=34296310 Score = 73.4 bits (80), Expect = 2e-11 Identities = 93/128 (73%), Gaps = 14/128 (11%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAA---AATGATAACATCG 57 |||||||||||||||| |||| || ||| |||| ||| |||| ||| || ||||| Sbjct 31044958 GAACCCAAAGACTTTGGTTTCCCGGAAGCTGCCCGGCGGGTCATGGGAATAATGCCATCG 31044899 Query 58 CCCGATCCCTAGTCGGCATAGTTTAC--------GGTTAAGACTACGACGGTATCTGATC 109 | ||| | |||| |||| |||| ||| | ||||||| ||||||||||| Sbjct 31044898 C---ATCACCAGTCAGCATCATTTATTCATTTATGGTCAGAACTACGATGGTATCTGATC 31044842 Query 110 GTCTTCGA 117 |||||||| Sbjct 31044841 GTCTTCGA 31044834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278366474550