Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq3 145 1e-32 seq79 132 9e-29 seq17 131 3e-28 seq18 120 6e-25 seq45 114 2e-23 seq199 109 1e-21 seq57 105 1e-20 seq4 96.9 6e-18 seq35 80.6 5e-13 >seq3 Length=52403620 Score = 145 bits (160), Expect = 1e-32 Identities = 182/245 (74%), Gaps = 6/245 (2%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTG---CTCGAATACATTAGCAT 130 |||||||||||||||||||||||||||||||| |||| | | | |||| ||| Sbjct 44770395 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAAGCCTGAGCCACCTGGATACTGCAGCTA 44770454 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 |||||||| |||||||| || ||||||||||||||||||| | | || | || ||||| Sbjct 44770455 GGAATAATGAAATAGGAC-TGAGGTTCTATTTTGTTGGTTT-TGGAACTGAGGTCATGAT 44770512 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 ||| ||||| |||| | | ||||| | ||||||||||| |||||| | | Sbjct 44770513 TAAGTGGGATGACCGGGAGCATTCGTATTGCGCCGCTAGAGGTGAAATACTTGGACTGGT 44770572 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 ||||| || | | |||||| || ||| |||||||||||||||| |||||||| Sbjct 44770573 GCAAGACGGACCAGAGTGAAAGCATTTGCCAGAAATGTTTTCATTAATCA-AGAACGAAA 44770631 Query 311 GTTAG 315 || || Sbjct 44770632 GTCAG 44770636 >seq79 Length=9601433 Score = 132 bits (146), Expect = 9e-29 Identities = 181/248 (73%), Gaps = 6/248 (2%) Strand=Plus/Minus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC---GAATACATTAGCAT 130 ||||||||||||||||||||||||||||||||||| | || | || || |||| Sbjct 4023882 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCATGAGCCACCTGGATCCAC-AGCAA 4023824 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 |||| ||| ||||| || | ||||||||||||||||||| || || | | ||||| Sbjct 4023823 GGAACAATGGAATAAAACC-GAGGTTCTATTTTGTTGGTTTTCAGAACTGAGGCCATGAT 4023765 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 ||| |||||||| | |||| | | ||| | | ||||||||||| |||||| | Sbjct 4023764 TAAAAGGGATAGCCAGGGGCATTTGAATTGCACTACTAGAGGTGAAATCCTTGGACCTGC 4023705 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 |||| || | | |||||| | ||||| || ||||||||||||| |||| ||| Sbjct 4023704 GCAAGATGGACCAGAGTGAAAGCATATGCCAAGAATATTTTCATTAATCA-AGAACCAAA 4023646 Query 311 GTTAGGGG 318 || || || Sbjct 4023645 GTCAGAGG 4023638 >seq17 Length=30559220 Score = 131 bits (144), Expect = 3e-28 Identities = 175/239 (73%), Gaps = 6/239 (3%) Strand=Plus/Minus Query 78 CTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC---GAATACATTAGCATGGAA 134 |||||||||||||||||||||||||||||||| || | |||| || |||| Sbjct 11873519 CTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCGAGCCACCTGGATACTGCAGTTAGGAA 11873460 Query 135 TAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAAT 194 |||| ||||||||| ||||||||||||||||||||| | || | | || || || Sbjct 11873459 TAATGGAATAGGACC-GCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATTATAAAG 11873401 Query 195 AGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAA 254 |||||| | |||||| | ||||| || |||||||||||||||||| || Sbjct 11873400 AGGGATGGCCGGGGGCATTCGTATTGTGCTGCTAGAGGTGAAATTCTTGGACCGGCGCAA 11873341 Query 255 GACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313 ||| | | | |||||| || ||||| ||| |||||||||||| ||| ||||||| Sbjct 11873340 GACGGAACAGAGTGAAAGCATTTGCCAAGAATG-TTTCATTAATCA-AGAATGAAAGTT 11873284 >seq18 Length=30093284 Score = 120 bits (132), Expect = 6e-25 Identities = 180/252 (71%), Gaps = 9/252 (4%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCC---TTTGCTCGAATACATTAGCAT 130 |||||||||||||||||||||||||||||||||||| || | |||| ||| Sbjct 29211511 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTA 29211570 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 |||||||| ||||||||| | |||||| |||||||||||| || | | | ||| Sbjct 29211571 GGAATAATGGAATAGGAC-CGTGGTTCTGTTTTGTTGGTTTTCAGAATTGAGGCCTTGAG 29211629 Query 191 TAATAG----GGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGAT 246 ||| || || | | |||||| | ||||| | |||||||||||||||||| Sbjct 29211630 TAAGAGGGCTGGCTGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGAC 29211689 Query 247 TTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAAC 306 ||||| || | |||||||| || || || || ||||||||||||| |||| Sbjct 29211690 CGGCGCAAGACGGACCAGAGCGAAAGCATTTGCCTAGAATCTTTTCATTAATCA-AGAAC 29211748 Query 307 GAAAGTTAGGGG 318 ||||| || || Sbjct 29211749 AAAAGTCAGAGG 29211760 >seq45 Length=16762582 Score = 114 bits (126), Expect = 2e-23 Identities = 174/243 (72%), Gaps = 11/243 (5%) Strand=Plus/Plus Query 76 TACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTG---CTCGAATACATTAGCATGG 132 |||||||||||||||||||| || |||||||||| | || | |||| ||| || Sbjct 2249038 TACTTTGAAAAAATTAGAGTCTTTAAAGCAGGCCCAAGCCACTTGGATACCGCAGCTAGG 2249097 Query 133 AATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTA 192 | |||| |||||| || || ||| |||||||||||||| || || | | ||||||| Sbjct 2249098 AGTAATGGAATAGAAC-CGCAGTTATATTTTGTTGGTTTTCAGAACTGATGCCATGATTA 2249156 Query 193 ATAGGGATAGTCGGGGGTGTCAGTATT---CAATTGTCAGAGGTGAAATTCTTGGATTTA 249 | |||||| | ||||| | || || | | | |||||||||||||||||| Sbjct 2249157 AGAGGGATGGCTGGGGGCATTCGTTTTGTGCCACT---AGAGGTGAAATTCTTGGACCGG 2249213 Query 250 TTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAA 309 |||| || | || ||||| || ||||| ||||||||| |||||| |||| || Sbjct 2249214 CACAAGATGGACCAGAGCAAAAGCATTTGCCAAGAATGTTTTCACTAATCA-AGAACAAA 2249272 Query 310 AGT 312 ||| Sbjct 2249273 AGT 2249275 >seq199 Length=1077937 Score = 109 bits (120), Expect = 1e-21 Identities = 198/282 (70%), Gaps = 17/282 (6%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| ||| |||| ||| | | || | | | |||||||||||||| |||||| Sbjct 295505 ATGCTCTTAGCTGAGTGTCCCGAGAACCCCGAAGCATTTACTTTGAAAAA----GAGTGT 295450 Query 98 TCAAAGCAGGCCTTTGCTC--GAATACATTAGCATGGAATAATAGAATAGGACGTGCGGT 155 |||||||||||| | | || ||| ||| || |||| ||||||||| ||||| Sbjct 295449 TCAAAGCAGGCCAAAACACCTGATTACCACAGCTAGGGATAACGGAATAGGACC-GCGGT 295391 Query 156 TCTATTTTGTTGGTTTCTAGGACC----GCCGTAATGATTAATAGGGATAGTCGGGGGTG 211 |||||||||||| ||| | ||| | |||| ||||||| ||||| | | |||| | Sbjct 295390 TCTATTTTGTTGCTTT-TGGGAACTGTGGCCG---TGATTAAGAGGGACGGCCAGGGGCG 295335 Query 212 TCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAA 271 | ||||| | |||||| |||||||||| | | |||| || | || |||| Sbjct 295334 TTCGTATTGTGCCGCCAGAGGAGAAATTCTTGAACTGGCACAAGATGGACCAGTGTGAAA 295275 Query 272 GCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313 | || ||||| || |||||| |||||| ||| |||||| Sbjct 295274 GTATTTGCCAAGAATCTTTTCAATAATCA-AGAAGCAAAGTT 295234 >seq57 Length=13814656 Score = 105 bits (116), Expect = 1e-20 Identities = 168/235 (71%), Gaps = 12/235 (5%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAATT-AGAGTGTTCAAAGCAGGCCTTTGCTC---GAATACATTAGCA 129 ||||||||||||||| | ||||| ||||||||||||| || | |||| || Sbjct 9720019 TTTACTTTGAAAAAAATCAGAGTATTCAAAGCAGGCCCAAGCCACCTGGATACCACAGGT 9720078 Query 130 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGA 189 |||||||| |||||||| |||||||||||||||||||||| || || | | |||| Sbjct 9720079 AGGAATAATGGAATAGGAT-TGCGGTTCTATTTTGTTGGTTTTCAGAACTGAGGCCATGA 9720137 Query 190 TTAATAGGGATAGTCGGGGGTGTCAGTATT---CAATTGTCAGAGGTGAAATTC-TTGGA 245 ||| ||| || | | |||| | |||| | | | || |||||||||| ||||| Sbjct 9720138 GTAAGAGGAATGGCCAGGGGCATTCATATTGCGCCACT---AGTGGTGAAATTCTTTGGA 9720194 Query 246 TTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCA 300 ||||| ||| | || ||||| || || || |||||||||||||||| Sbjct 9720195 CCAGCACAAGACGAACCAGAGCAAAAGCATTTGCCTAGAATGTTTTCATTAATCA 9720249 >seq4 Length=51989874 Score = 96.9 bits (106), Expect = 6e-18 Identities = 155/221 (70%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC---GAATACATTAGCAT 130 ||||||| |||||||||||||| |||||| ||||| || | || | ||| Sbjct 7564262 TTTACTTAGAAAAAATTAGAGTATTCAAAATAGGCCCGAGCCACCTGGATGCCGCAGCTA 7564203 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 |||||||| |||| || | |||| |||||||||||||| || || | | ||||| Sbjct 7564202 GGAATAATGCAATAAAACCTT-GGTTGTATTTTGTTGGTTTTCAGAACTGAGGCTATGAT 7564144 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 ||| ||||| | |||||| | ||||| | |||||||||||||||||| | | Sbjct 7564143 TAAGAGGGACGGCCGGGGGCATTCGTATTGCACCACTAGAGGTGAAATTCTTGGACTGGT 7564084 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTT 291 ||||| || | | |||||| || ||||| || |||| Sbjct 7564083 GCAAGACGGACCAGAGTGAAAGCATTTGCCAAGAATTTTTT 7564043 >seq35 Length=23239271 Score = 80.6 bits (88), Expect = 5e-13 Identities = 117/163 (72%), Gaps = 7/163 (4%) Strand=Plus/Plus Query 153 GGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGT 212 ||||||||||||||||||| | || | | |||||||| ||||| | |||||| | Sbjct 12004080 GGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGATTAAGAGGGACGGCCGGGGGCAT 12004139 Query 213 CAGTATT---CAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGA 269 ||||| | | | ||||||||||||||| || ||||| ||| | | || Sbjct 12004140 TCGTATTGCGCCACT---AGAGGTGAAATTCTTCGACCAGCATAAGACCAACCAGAGTGA 12004196 Query 270 AAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 ||| || | ||| |||||||||||||||| |||||||||| Sbjct 12004197 AAGTATTTGCTAAGAATGTTTTCATTAATCA-AGAACGAAAGT 12004238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915082442560