Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq78 91.5 9e-17 seq182 80.6 2e-13 seq60 78.8 6e-13 seq119 71.6 8e-11 >seq78 Length=9970888 Score = 91.5 bits (100), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||||| ||||||||||| ||||||||||||||||||| Sbjct 3987 CTCACTAAACCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACT 3930 Query 109 TAATACAACGCAAGCT 124 |||| ||||||||||| Sbjct 3929 TAAT-CAACGCAAGCT 3915 >seq182 Length=1589727 Score = 80.6 bits (88), Expect = 2e-13 Identities = 56/61 (92%), Gaps = 2/61 (3%) Strand=Plus/Minus Query 64 CATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAAGC 123 || ||||||||| ||||||||||| ||||||||||||||||||| |||| |||||||||| Sbjct 1589719 CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACTTAAT-CAACGCAAGC 1589662 Query 124 T 124 | Sbjct 1589661 T 1589661 >seq60 Length=12916489 Score = 78.8 bits (86), Expect = 6e-13 Identities = 67/79 (85%), Gaps = 3/79 (4%) Strand=Plus/Plus Query 46 GTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGG 105 || |||||||| |||| || ||||||||| |||| |||| | ||||||||||||||||| Sbjct 7559635 GTCCTCACTAAACCATC-CAATCGGTAGTA-GCGATGGGCAGTGTGTACAAAGGGCAGGG 7559692 Query 106 ACGTAATACAACGCAAGCT 124 || |||| |||| |||||| Sbjct 7559693 ACTTAAT-CAACACAAGCT 7559710 >seq119 Length=4927305 Score = 71.6 bits (78), Expect = 8e-11 Identities = 58/68 (85%), Gaps = 2/68 (3%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| ||| |||||||| |||||||||| ||||||||||||||||||| Sbjct 3471665 CTCACTAAACCATCCAATT-GGTAGTAA-CGACGGGCGGTGTGTACAAAGGGCAGGGACT 3471608 Query 109 TAATACAA 116 | || ||| Sbjct 3471607 TGATGCAA 3471600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300763777100