Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq3 82.4 8e-14 seq79 80.6 3e-13 seq18 78.8 1e-12 >seq3 Length=52403620 Score = 82.4 bits (90), Expect = 8e-14 Identities = 80/101 (79%), Gaps = 4/101 (4%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTG---CTCGAATACATTACCAT 69 ||||||||||||||||||||| |||||||||| |||| | | | |||| | | Sbjct 44770395 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAAGCCTGAGCCACCTGGATACTGCAGCTA 44770454 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTT 110 |||||||| |||||||| || ||||||||||||| ||||| Sbjct 44770455 GGAATAATGAAATAGGAC-TGAGGTTCTATTTTGTTGGTTT 44770494 >seq79 Length=9601433 Score = 80.6 bits (88), Expect = 3e-13 Identities = 126/176 (72%), Gaps = 6/176 (3%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTG---CTCGAATACATTACCAT 69 ||||||||||||||||||||| ||||||||||||| | | | | || || | || Sbjct 4023882 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCATGAGCCACCTGGATCCA-CAGCAA 4023824 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 |||| ||| ||||| || | ||||||||||||| ||||| || || | | |||| Sbjct 4023823 GGAACAATGGAATAAAAC-CGAGGTTCTATTTTGTTGGTTTTCAGAACTG-AGGCCATGA 4023766 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 | || | |||||| | |||| | | ||| | | | ||||||||| |||||| Sbjct 4023765 TTAAAAGGGATAGCCAGGGGCATTTGAATTGCACTACTAGAGGTGAAATCCTTGGA 4023710 >seq18 Length=30093284 Score = 78.8 bits (86), Expect = 1e-12 Identities = 79/101 (78%), Gaps = 4/101 (4%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC---TTTGCTCGAATACATTACCAT 69 ||||||||||||||||||||| |||||||||||||| || | |||| | | Sbjct 29211511 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTA 29211570 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTT 110 |||||||| ||||||||| | |||||| |||||| ||||| Sbjct 29211571 GGAATAATGGAATAGGAC-CGTGGTTCTGTTTTGTTGGTTT 29211610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511936288800