Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq61 203 3e-47 seq119 102 6e-17 seq28 96.9 3e-15 seq37 87.8 1e-12 >seq61 Length=12918418 Score = 203 bits (224), Expect = 3e-47 Identities = 606/912 (66%), Gaps = 36/912 (4%) Strand=Plus/Minus Query 61037 TGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCA 61096 |||| ||||| || | || | || | |||||| ||||||| | ||||| |||| | Sbjct 2374226 TGCAGGAGAACCCGCTGCGCTCCGCCGTCTTCCCCGTCGAGTACCACGATATCTGGCAGA 2374167 Query 61097 TGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACA 61156 |||||| ||||| || || ||||||||||||| ||||| || | | ||||| |||| Sbjct 2374166 TGTACAGGAAGGCCGAGGCGTCCTTCTGGACGGCCGAGGAAGTGGGCCTTTCCAAGGACA 2374107 Query 61157 TGAATGACTGGGAG--CGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGC 61214 | | || |||| | | | | | | || || | ||| |||| |||| Sbjct 2374106 TCCAGCACCGGGACGCCCTCAAGCCCGACGAGAGGTACTTCACATCGCACATCC--TGGC 2374049 Query 61215 GTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAAC----GTTTCGCGC 61270 ||||| ||||| || |||| ||||||| |||||| | | || | |||| || | Sbjct 2374048 TTTCTTCGCCGCCCCG-ACGGCATCGTCACTGAGAACCTGGTCGAGCTAAGGTTTAGC-C 2373991 Query 61271 AGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATG 61330 | || || || | | || || || |||||||| ||||| || | ||||| ||| || Sbjct 2373990 AAGAAGTTCAGATCACAGAAGCCCGCTGTTTCTATGGCTTTCAAAATGCCACGGAAAACA 2373931 Query 61331 TCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA-GCGGGCGGAACGT 61389 ||||| || ||||||||| | |||| ||||| |||| | || || |||| | Sbjct 2373930 GACACTCTGAAATGTACAGTCTCCTCACTGATACTTACAATAAAGATGCCAAAGGAAGG- 2373872 Query 61390 GAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCC 61449 ||| | |||||||| || || || || || || ||| ||| ||||| |||||| Sbjct 2373871 GAAAACCTCTTCAATGCTATTGAAACAATGCCTTGTGTCAAGAAGAAGGCGGACTGGGCC 2373812 Query 61450 TTCA----ATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGC 61505 || |||||| ||| | | |||| | | || ||||| | ||||| ||||| Sbjct 2373811 TTGTGGGGATTGGA-CAC----AGAGAGGCTCCCTA-GGAGAACGTGTCCTGGCTTTTGC 2373758 Query 61506 GGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACG 61565 || || || || | || || ||| |||||||| | || || ||| |||| ||| | Sbjct 2373757 GGCAGTGGAAGGGATCTTCTTTTCTGGCTCGTTTGCATCGATATTCTGGCTGAAAAAAAG 2373698 Query 61566 T-GGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGAT-ATCACGCGACGAGGGCATG 61623 ||||| ||||| || || || || |||||| | || | || | || ||||| | Sbjct 2373697 GAGGACTGATGCCTGGCCTCACATTTTCCAATGAACTTATTAGCAGG-GATGAGGGTTTC 2373639 Query 61624 CATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAG 61683 || ||||| |||||| || | ||||||| |||| | | || |||||| || Sbjct 2373638 CACTGTGACTTTGCTTGCCTGATGTTCAAAC---ATCTAATACACAAACCTTCGGAGCAG 2373582 Query 61684 CGTGTGGGTGAGATTGTTCGTGAG-GCGGTAACTATCGAACAGGAATTTCTGACTGACGC 61742 | ||| || || | | | || || || | || |||||||| || || ||||| || Sbjct 2373581 AGAGTGAAAGAAATAATCC-TCAGTGCTGTTAAAATAGAACAGGAGTTCCTTACTGAGGC 2373523 Query 61743 TTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGT 61802 ||||| || ||||| || ||||| || ||||| ||||||||||||||||| Sbjct 2373522 CTTGCCTGTGAATCTCATTGGGATGAACTGCATGTTAATGAAACAGTATATTGAATTTGT 2373463 Query 61803 TGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGC--GGATCT-ATAATACGAAAAACCC 61859 | ||| | || || | || | ||| | ||| || | | | | || |||| || Sbjct 2373462 GCCTGACAGACTTATGCTGGAGCTAGGT-TTCAGCAAGGTTTTCAGAGTA--GAAAATCC 2373406 Query 61860 ATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGT 61919 |||||| |||||||| | || || ||||| || ||||| || || || ||||| | || Sbjct 2373405 ATTTGACTTCATGGAGAATATCTCACTGGAAGGGAAGACTAACTTCTTTGAGAAGAGAGT 2373346 Query 61920 AGGCGACTATCA 61931 | | || ||||| Sbjct 2373345 AAGAGAGTATCA 2373334 >seq119 Length=4927305 Score = 102 bits (112), Expect = 6e-17 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||| || || || | ||| |||||||| || ||||| ||||| ||||| ||||| || Sbjct 3051869 GGTGTATTCTACTACTTCTGTGCACAGGTTGCTGCATTTGATGGTTCCCAAGTTCTGCTG 3051810 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 |||||| || |||||||| | ||| ||||| | |||||| || || || || || || Sbjct 3051809 ATTACTTTTCCGATTGCAGGAATCTTTGTAGAGCATGTAGGGGGTACCCGTTTCTGTCTG 3051750 Query 66169 GGACTCAATGATGGCGTGCCAAAG 66192 || ||||||||||| | |||||| Sbjct 3051749 AGATTCAATGATGGCATACCAAAG 3051726 >seq28 Length=26224161 Score = 96.9 bits (106), Expect = 3e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| ||||| |||||||| || || | || || || |||||||| ||||| || | Sbjct 21854752 TGGAGCGTTTTAGCCAGGAGGTACAGGTTCCAGAAGCTCGCTGTTTCTATGGCTTTCAAA 21854811 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 ||||||| |||||||| || || |||||||||||| | || || || || |||||||| | Sbjct 21854812 TTGCCATCGAGAATGTTCATTCAGAGATGTACAGTTTGCTAATAGACACTTACATCAGAG 21854871 Query 61376 A 61376 | Sbjct 21854872 A 21854872 Score = 93.3 bits (102), Expect = 3e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| ||||| |||||||| || || | || || || |||||||| ||||| || | Sbjct 21878694 TGGAGCGTTTTAGCCAGGAGGTACAGGTTCCAGAAGCTCGCTGTTTCTATGGCTTTCAAA 21878753 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 ||| ||| |||||||| || || |||||||||||| | || || || || |||||||| | Sbjct 21878754 TTGTCATCGAGAATGTTCATTCAGAGATGTACAGTTTGCTAATAGACACTTACATCAGAG 21878813 Query 61376 A 61376 | Sbjct 21878814 A 21878814 >seq37 Length=21270769 Score = 87.8 bits (96), Expect = 1e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 || || || || ||| | || || || |||||||| |||||||| ||||||||||| || Sbjct 14839991 CAAGAAGTTCAGGTGACAGAAGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAAC 14839932 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACAT 61370 | ||||| || ||||||||| | ||||| ||||| ||||| Sbjct 14839931 ATACACTCTGAAATGTACAGTCTCCTCATTGATACTTACAT 14839891 Score = 82.4 bits (90), Expect = 6e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 61042 GAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTAC 61101 ||||| || || || ||||| | |||||||||||||| | || || |||| ||||| Sbjct 14840685 GAGAACCCCCGGCGCTTCGTCGTCTTCCCCATCGAGTACCACGACATCTGGCAGATGTAT 14840626 Query 61102 AAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGT 61139 || ||||| || || ||||||||||||| |||||||| Sbjct 14840625 AAGAAGGCCGAGGCGTCCTTCTGGACGGCCGAGGAGGT 14840588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397505761350800