Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq352 174 2e-41 seq156 174 2e-41 seq360 95.1 2e-17 seq17 93.3 6e-17 seq6 89.7 8e-16 >seq352 Length=51932 Score = 174 bits (192), Expect = 2e-41 Identities = 182/234 (78%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||| ||||| ||||| ||| |||||| |||||| | Sbjct 6091 GTACAAAGGGCAGGGACTTAATCAACGCAAGCTT-ATGACCCGCACTTACTGGGAATT-C 6148 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || ||||||||| | ||||||||||||| ||||| | || Sbjct 6149 CTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTT 6208 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| |||| |||| ||| | || || ||| |||||||||||||||||| Sbjct 6209 ACCCGCGCCTGCCGGCGTAGGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCA 6268 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 6269 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 6321 Score = 174 bits (192), Expect = 2e-41 Identities = 182/234 (78%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||| ||||| ||||| ||| |||||| |||||| | Sbjct 44928 GTACAAAGGGCAGGGACTTAATCAACGCAAGCTT-ATGACCCGCACTTACTGGGAATT-C 44871 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || ||||||||| | ||||||||||||| ||||| | || Sbjct 44870 CTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTT 44811 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| |||| |||| ||| | || || ||| |||||||||||||||||| Sbjct 44810 ACCCGCGCCTGCCGGCGTAGGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCA 44751 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 44750 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 44698 >seq156 Length=16266 Score = 174 bits (192), Expect = 2e-41 Identities = 182/234 (78%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||| ||||| ||||| ||| |||||| |||||| | Sbjct 8543 GTACAAAGGGCAGGGACTTAATCAACGCAAGCTT-ATGACCCGCACTTACTGGGAATT-C 8486 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || ||||||||| | ||||||||||||| ||||| | || Sbjct 8485 CTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTT 8426 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| |||| |||| ||| | || || ||| |||||||||||||||||| Sbjct 8425 ACCCGCGCCTGCCGGCGTAGGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCA 8366 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 8365 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 8313 >seq360 Length=54489 Score = 95.1 bits (104), Expect = 2e-17 Identities = 156/227 (69%), Gaps = 30/227 (13%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||| ||||||||| || ||||| | ||||| |||| || | |||||| |||||| | Sbjct 19806 GTACAAATGGCAGGGACTTAATCAACACAAGCTT-ATGATTCACACTTACTGGGAATT-C 19863 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || ||||||||| |||||||||| || | |||| | || Sbjct 19864 CTCGTTCATGGGGAATAATTGCAATCCCTGATCCCCATCATGAGCAGGGTTCAGCGGGTT 19923 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||| | |||| | | ||||||||| || ||||| Sbjct 19924 ACCAGTGCCTGCCAG--------------------------TCAGTGTAGTGCACGTGCA 19957 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTT 226 |||| |||||||||||||||||||||||||||||| ||||| ||| Sbjct 19958 GCCCCAGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTT 20003 >seq17 Length=63494081 Score = 93.3 bits (102), Expect = 6e-17 Identities = 158/228 (69%), Gaps = 32/228 (14%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||| ||||||||| || ||||| | ||||| |||| || | |||||| |||||| | Sbjct 63295416 GTACAAATGGCAGGGACTTAATCAACACAAGCTT-ATGATTCACACTTACTGGGAATT-C 63295359 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCT-ATCCCCATCACGATGAAATTTCAAAGA-T 118 |||||| | | || ||||||||| ||| |||||||||| || | |||| | | Sbjct 63295358 CTCGTTCATGGGGAATAATTGCAATC-TCTGATCCCCATCATGAGCAGGGTTCAGCGGGT 63295300 Query 119 TACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 |||| | |||| | | ||||||||| || ||||| Sbjct 63295299 TACCAGTGCCTGCCAG--------------------------TCAGTGTAGTGCACGTGC 63295266 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTT 226 |||| ||| |||||||||||||||||||||||||| ||||| ||| Sbjct 63295265 AGCCCCAGACACCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTT 63295219 Score = 89.7 bits (98), Expect = 8e-16 Identities = 155/227 (68%), Gaps = 30/227 (13%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||| ||||||||| || ||||| | ||||| |||| || | |||||| |||||| | Sbjct 63188736 GTACAAATGGCAGGGACTTAATCAACACAAGCTT-ATGATTCACACTTACTGGGAATT-C 63188679 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || ||||||||| |||||||||| || | |||| | || Sbjct 63188678 CTCGTTCATGGGGAATAATTGCAATCCCTGATCCCCATCATGAGCAGGGTTCAGCGGGTT 63188619 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||| | |||| | | ||||||||| || ||||| Sbjct 63188618 ACCAGTGCCTGCCAG--------------------------TCAGTGTAGTGCACGTGCA 63188585 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTT 226 |||| ||| |||||||||||||||||||||||||| ||||| ||| Sbjct 63188584 GCCCCAGACACCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTT 63188539 Score = 89.7 bits (98), Expect = 8e-16 Identities = 155/227 (68%), Gaps = 30/227 (13%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||| ||||||||| || ||||| | ||||| |||| || | |||||| |||||| | Sbjct 63248441 GTACAAATGGCAGGGACTTAATCAACACAAGCTT-ATGATTCACACTTACTGGGAATT-C 63248384 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || ||||||||| |||||||||| || | |||| | || Sbjct 63248383 CTCGTTCATGGGGAATAATTGCAATCCCTGATCCCCATCATGAGCAGGGTTCAGCGGGTT 63248324 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||| | |||| | | ||||||||| || ||||| Sbjct 63248323 ACCAGTGCCTGCCAG--------------------------TCAGTGTAGTGCACGTGCA 63248290 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTT 226 |||| ||| |||||||||||||||||||||||||| ||||| ||| Sbjct 63248289 GCCCCAGACACCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTT 63248244 Score = 89.7 bits (98), Expect = 8e-16 Identities = 155/227 (68%), Gaps = 30/227 (13%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||| ||||||||| || ||||| | ||||| |||| || | |||||| |||||| | Sbjct 63357657 GTACAAATGGCAGGGACTTAATCAACACAAGCTT-ATGATTCACACTTACTGGGAATT-C 63357600 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || ||||||||| |||||||||| || | |||| | || Sbjct 63357599 CTCGTTCATGGGGAATAATTGCAATCCCTGATCCCCATCATGAGCAGGGTTCAGCGGGTT 63357540 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||| | |||| | | ||||||||| || ||||| Sbjct 63357539 ACCAGTGCCTGCCAG--------------------------TCAGTGTAGTGCACGTGCA 63357506 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTT 226 |||| ||| |||||||||||||||||||||||||| ||||| ||| Sbjct 63357505 GCCCCAGACACCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTT 63357460 >seq6 Length=170843587 Score = 89.7 bits (98), Expect = 8e-16 Identities = 167/235 (71%), Gaps = 8/235 (3%) Strand=Plus/Minus Query 24 AACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAAGACCAACAATTGCA 83 ||| | ||||| ||||||| | |||||| |||||| |||| || | | || || |||| Sbjct 128759810 AACACTAGCTT-ATGACTCACACTTACTGGGAATT-CCTCCTTCATGGGGAATAACTGCA 128759753 Query 84 ATGATCTATCCCCATCACGATGAAATTTCAA-AGATTACCCGGACCTGTCGGCCAAGGTG 142 || |||| |||||| | | | ||||| | |||||| |||| ||| ||| Sbjct 128759752 ATCCCTGATCCTCATCACAAGTAGAATTCAATATGTTACCCATGCCTGCTGGCATAGGGT 128759693 Query 143 ATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCC-CAGAACATCTAAGGGCATC 201 | || || ||| |||||||||| | |||| ||| |||| || |||||||||| Sbjct 128759692 AGGCACACGCTGAGCCAGTCAGTGTAGCATGAGTGCAGCCTCAGAT-ATGTAAGGGCATC 128759634 Query 202 ACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGGC-CATCTCCCTCGAA 255 ||||||||||||||| ||||| || |||| || || ||| | | |||||| || Sbjct 128759633 ACAGACCTGTTATTG-CTCAATCTCGGGTGG-CTGAATGGCACTTGTCCCTCCAA 128759581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751995534295