Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq352 174 3e-41 seq156 174 3e-41 seq360 100 5e-19 seq17 100 5e-19 >seq352 Length=51932 Score = 174 bits (192), Expect = 3e-41 Identities = 208/278 (75%), Gaps = 6/278 (2%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| ||| |||| ||| || ||| | | | |||||||||||||||||||||||| Sbjct 7024 ATGCTCTTAGCTGAGTGTCCCGCGGGGCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGT 6965 Query 98 TCAAAGCAGGCCTTTGCTC---GAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154 |||||||||||| || | |||| ||| |||||||| ||||||||| |||| Sbjct 6964 TCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGGACC-GCGG 6906 Query 155 TTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCA 214 ||||||||||||||||| | || | | |||||||| ||||| | |||||| | Sbjct 6905 TTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGATTAAGAGGGACGGCCGGGGGCATTC 6846 Query 215 GTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCG 274 ||||| | |||||||||||||||||| ||||| || | |||||||| Sbjct 6845 GTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACCAGAGCGAAAGCA 6786 Query 275 TTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 || ||||| |||||||||||||||| |||||||||| Sbjct 6785 TTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 6749 Score = 174 bits (192), Expect = 3e-41 Identities = 208/278 (75%), Gaps = 6/278 (2%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| ||| |||| ||| || ||| | | | |||||||||||||||||||||||| Sbjct 43995 ATGCTCTTAGCTGAGTGTCCCGCGGGGCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGT 44054 Query 98 TCAAAGCAGGCCTTTGCTC---GAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154 |||||||||||| || | |||| ||| |||||||| ||||||||| |||| Sbjct 44055 TCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGGACC-GCGG 44113 Query 155 TTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCA 214 ||||||||||||||||| | || | | |||||||| ||||| | |||||| | Sbjct 44114 TTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGATTAAGAGGGACGGCCGGGGGCATTC 44173 Query 215 GTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCG 274 ||||| | |||||||||||||||||| ||||| || | |||||||| Sbjct 44174 GTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACCAGAGCGAAAGCA 44233 Query 275 TTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 || ||||| |||||||||||||||| |||||||||| Sbjct 44234 TTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 44270 >seq156 Length=16266 Score = 174 bits (192), Expect = 3e-41 Identities = 208/278 (75%), Gaps = 6/278 (2%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| ||| |||| ||| || ||| | | | |||||||||||||||||||||||| Sbjct 7610 ATGCTCTTAGCTGAGTGTCCCGCGGGGCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGT 7669 Query 98 TCAAAGCAGGCCTTTGCTC---GAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154 |||||||||||| || | |||| ||| |||||||| ||||||||| |||| Sbjct 7670 TCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGGACC-GCGG 7728 Query 155 TTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCA 214 ||||||||||||||||| | || | | |||||||| ||||| | |||||| | Sbjct 7729 TTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGATTAAGAGGGACGGCCGGGGGCATTC 7788 Query 215 GTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCG 274 ||||| | |||||||||||||||||| ||||| || | |||||||| Sbjct 7789 GTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACCAGAGCGAAAGCA 7848 Query 275 TTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 || ||||| |||||||||||||||| |||||||||| Sbjct 7849 TTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 7885 >seq360 Length=54489 Score = 100 bits (110), Expect = 5e-19 Identities = 171/241 (71%), Gaps = 9/241 (4%) Strand=Plus/Minus Query 74 TTTACTTTGAA-AAAATTAGAGTGTTCAAAGCAGGCCTTTGC-TC--GAATACATTAGCA 129 ||||| ||||| ||||||||||| ||| ||||||||| || || | |||| ||| Sbjct 20681 TTTACATTGAAGAAAATTAGAGTATTCGAAGCAGGCCCAAGCCTCCTGGATACCACAGCT 20622 Query 130 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGA 189 ||||||| ||||||||| ||||||| ||||||||||| || || | | |||| Sbjct 20621 AAGAATAATGGAATAGGACCAT-GGTTCTACTTTGTTGGTTTTCAGAACTGAGGCCATGA 20563 Query 190 TTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTA 249 |||| ||| || | ||| | |||| | |||||||||||||||||| Sbjct 20562 TTAA---GGACAGCCAGGGACATTCATATTGCACCACTAGAGGTGAAATTCTTGGACCAG 20506 Query 250 TTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAA 309 | |||| || | || ||||| || ||||| |||||||||||||||| |||| || Sbjct 20505 TACAAGATGGACCAGAGCAAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGAACAAA 20447 Query 310 A 310 | Sbjct 20446 A 20446 >seq17 Length=63494081 Score = 100 bits (110), Expect = 5e-19 Identities = 171/241 (71%), Gaps = 9/241 (4%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAA-TTAGAGTGTTCAAAGCAGGCCTTTGC-TC--GAATACATTAGCA 129 ||||||||||||||| ||||||| ||| ||||||||| || || | |||| ||| Sbjct 63187865 TTTACTTTGAAAAAAATTAGAGTATTCGAAGCAGGCCCAAGCCTCCTGGATACCACAGCT 63187924 Query 130 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGA 189 ||||||| ||||||||| ||||||| ||||||||||| || || | | |||| Sbjct 63187925 AAGAATAATGGAATAGGACCAT-GGTTCTACTTTGTTGGTTTTCAGAACTGAGGCCATGA 63187983 Query 190 TTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTA 249 |||| ||| || | ||| | |||| | |||||||||||||||||| Sbjct 63187984 TTAA---GGACAGCCAGGGACATTCATATTGCACCACTAGAGGTGAAATTCTTGGACCAG 63188040 Query 250 TTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAA 309 | |||| || | || ||||| || ||||| |||||||||| ||||| |||| || Sbjct 63188041 TACAAGATGGACCAGAGCAAAAGCATTTGCCAAGAATGTTTTCATCAATCA-AGAACAAA 63188099 Query 310 A 310 | Sbjct 63188100 A 63188100 Score = 100 bits (110), Expect = 5e-19 Identities = 171/241 (71%), Gaps = 9/241 (4%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAA-TTAGAGTGTTCAAAGCAGGCCTTTGC-TC--GAATACATTAGCA 129 ||||||||||||||| ||||||| ||| ||||||||| || || | |||| ||| Sbjct 63247566 TTTACTTTGAAAAAAATTAGAGTATTCGAAGCAGGCCCAAGCCTCCTGGATACCACAGCT 63247625 Query 130 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGA 189 ||||||| ||||||||| ||||||| ||||||||||| || || | |||| Sbjct 63247626 AAGAATAATGGAATAGGACCAT-GGTTCTACTTTGTTGGTTTTCAGAACTGAGACCATGA 63247684 Query 190 TTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTA 249 |||| ||| || | ||| | |||| | |||||||||||||||||| Sbjct 63247685 TTAA---GGACAGCCAGGGACATTCATATTGCACCACTAGAGGTGAAATTCTTGGACCAG 63247741 Query 250 TTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAA 309 | |||| || | || ||||| || ||||| |||||||||||||||| |||| || Sbjct 63247742 TACAAGATGGACCAGAGCAAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGAACAAA 63247800 Query 310 A 310 | Sbjct 63247801 A 63247801 Score = 100 bits (110), Expect = 5e-19 Identities = 171/241 (71%), Gaps = 9/241 (4%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAA-TTAGAGTGTTCAAAGCAGGCCTTTGC-TC--GAATACATTAGCA 129 ||||||||||||||| ||||||| ||| ||||||||| || || | |||| ||| Sbjct 63294541 TTTACTTTGAAAAAAATTAGAGTATTCGAAGCAGGCCCAAGCCTCCTGGATACCACAGCT 63294600 Query 130 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGA 189 ||||||| ||||||||| ||||||| ||||||||||| || || | | |||| Sbjct 63294601 AAGAATAATGGAATAGGACCAT-GGTTCTACTTTGTTGGTTTTCAGAACTGAGGCCATGA 63294659 Query 190 TTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTA 249 |||| ||| || | ||| | |||| | |||||||||||||||||| Sbjct 63294660 TTAA---GGACAGCCAGGGACATTCATATTGCACCACTAGAGGTGAAATTCTTGGACCAG 63294716 Query 250 TTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAA 309 | |||| || | || ||||| || ||||| |||||||||| ||||| |||| || Sbjct 63294717 TACAAGATGGACCAGAGCAAAAGCATTTGCCAAGAATGTTTTCATCAATCA-AGAACAAA 63294775 Query 310 A 310 | Sbjct 63294776 A 63294776 Score = 100 bits (110), Expect = 5e-19 Identities = 171/241 (71%), Gaps = 9/241 (4%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAA-TTAGAGTGTTCAAAGCAGGCCTTTGC-TC--GAATACATTAGCA 129 ||||||||||||||| ||||||| ||| ||||||||| || || | |||| ||| Sbjct 63356787 TTTACTTTGAAAAAAATTAGAGTATTCGAAGCAGGCCCAAGCCTCCTGGATACCACAGCT 63356846 Query 130 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGA 189 ||||||| ||||||||| ||||||| ||||||||||| || || | | |||| Sbjct 63356847 AAGAATAATGGAATAGGACCAT-GGTTCTACTTTGTTGGTTTTCAGAACTGAGGCCATGA 63356905 Query 190 TTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTA 249 |||| ||| || | ||| | |||| | |||||||||||||||||| Sbjct 63356906 TTAA---GGACAGCCAGGGACATTCATATTGCACCACTAGAGGTGAAATTCTTGGACCAG 63356962 Query 250 TTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAA 309 | |||| || | || ||||| || ||||| |||||||||| ||||| |||| || Sbjct 63356963 TACAAGATGGACCAGAGCAAAAGCATTTGCCAAGAATGTTTTCATCAATCA-AGAACAAA 63357021 Query 310 A 310 | Sbjct 63357022 A 63357022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915194389824