Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= AAMG01000750.1 Length=102 Score E Sequences producing significant alignments: (Bits) Value seq352 185 4e-45 seq156 185 4e-45 seq6 120 1e-25 seq8 73.4 2e-11 >seq352 Length=51932 Score = 185 bits (204), Expect = 4e-45 Identities = 102/102 (100%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2811 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 2752 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 |||||||||||||||||||||||||||||||||||||||||| Sbjct 2751 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 2710 Score = 185 bits (204), Expect = 4e-45 Identities = 102/102 (100%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 48193 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 48252 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 |||||||||||||||||||||||||||||||||||||||||| Sbjct 48253 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 48294 >seq156 Length=16266 Score = 185 bits (204), Expect = 4e-45 Identities = 102/102 (100%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11819 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 11878 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 |||||||||||||||||||||||||||||||||||||||||| Sbjct 11879 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 11920 >seq6 Length=170843587 Score = 120 bits (132), Expect = 1e-25 Identities = 87/101 (86%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 2 GAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCGC 61 |||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||| | Sbjct 27371613 GAAAAGAAACTAACCAGGATTCCCTCAGCAGCGGTGAGTGAACAGGGAAGAGCCCAGCAC 27371554 Query 62 CGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 ||||||| |||| || ||| | | |||| ||||||| || Sbjct 27371553 TGAATCCCTGCCCTGCAGTGAGATGTGGGAAATGTGGCATA 27371513 >seq8 Length=138966237 Score = 73.4 bits (80), Expect = 2e-11 Identities = 48/53 (91%), Gaps = 0/53 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAG 53 ||||||||||||||| || |||||||||||||| || |||||| ||||||||| Sbjct 54378898 GGAAAAGAAACTAACTAGAATTCCCTCAGTAACAGCAAGTGAAAAGGGAAGAG 54378846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 230398675920