Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq352 244 2e-62 seq156 244 2e-62 seq355 161 2e-37 seq360 158 2e-36 seq17 158 2e-36 seq19 136 6e-30 seq6 131 3e-28 seq9 75.2 2e-11 seq16 73.4 6e-11 >seq352 Length=51932 Score = 244 bits (270), Expect = 2e-62 Identities = 208/251 (83%), Gaps = 9/251 (4%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| | Sbjct 6249 GTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-T 6307 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAACCA-T 130 ||| || | |||||| | |||| | |||||||||||||| | | || ||| | Sbjct 6308 CAATCT-CGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGGACGCCGACCGCT 6366 Query 131 AGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 | | | | | ||| |||||| | | ||||||||||||||||||||||||||||| Sbjct 6367 CGGGGGTCGCGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGAC 6426 Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247 ||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 6427 AAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAGCT 6486 Query 248 ATCAATCTGTC 258 ||||||||||| Sbjct 6487 ATCAATCTGTC 6497 Score = 244 bits (270), Expect = 2e-62 Identities = 208/251 (83%), Gaps = 9/251 (4%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| | Sbjct 44770 GTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-T 44712 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAACCA-T 130 ||| || | |||||| | |||| | |||||||||||||| | | || ||| | Sbjct 44711 CAATCT-CGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGGACGCCGACCGCT 44653 Query 131 AGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 | | | | | ||| |||||| | | ||||||||||||||||||||||||||||| Sbjct 44652 CGGGGGTCGCGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGAC 44593 Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247 ||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 44592 AAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAGCT 44533 Query 248 ATCAATCTGTC 258 ||||||||||| Sbjct 44532 ATCAATCTGTC 44522 >seq156 Length=16266 Score = 244 bits (270), Expect = 2e-62 Identities = 208/251 (83%), Gaps = 9/251 (4%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| | Sbjct 8385 GTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-T 8327 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAACCA-T 130 ||| || | |||||| | |||| | |||||||||||||| | | || ||| | Sbjct 8326 CAATCT-CGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGGACGCCGACCGCT 8268 Query 131 AGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 | | | | | ||| |||||| | | ||||||||||||||||||||||||||||| Sbjct 8267 CGGGGGTCGCGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGAC 8208 Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247 ||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 8207 AAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAGCT 8148 Query 248 ATCAATCTGTC 258 ||||||||||| Sbjct 8147 ATCAATCTGTC 8137 >seq355 Length=383558 Score = 161 bits (178), Expect = 2e-37 Identities = 171/223 (77%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 36 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAG 95 ||| | |||||||||||||||| |||||||||||| |||| | || | |||||| | Sbjct 161298 CCCTGGACATCTAAGGGCATCATAGACCTGTTATT-CCTCCATCT-CAGGTGGCTGAAGA 161241 Query 96 CCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCGATGGGGCTATTTAGCAGGTT 155 ||| | |||||||||||||| || ||| | | ||| |||||| | Sbjct 161240 CCACTTGTCCCTCTAAGAAGTTGAAGGACACCCAGGGGTCACATAACTAGTTAGCATGCC 161181 Query 156 AAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCA 215 || |||| ||| |||||| ||||||||| | ||||||||||||| ||||| | ||| | Sbjct 161180 AAAGTCTTGTTTGTTATCAGAATTAACCTAATGAATCACTCCACCAGCTAAGGAGGGCTA 161121 Query 216 TGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||| |||| |||||||||||||||||||||||||||| Sbjct 161120 TGCACCACCTCCCACAGAATCAAGAAAGAGCTATCAATCTGTC 161078 >seq360 Length=54489 Score = 158 bits (174), Expect = 2e-36 Identities = 192/257 (75%), Gaps = 15/257 (6%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 |||||||||| || ||||| |||| ||||||||||||||||||||||||||||||| | Sbjct 19938 GTCAGTGTAGTGCACGTGCAGCCCCAGACATCTAAGGGCATCACAGACCTGTTATTGC-T 19996 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCA---CCAACCAT- 130 ||| ||| ||||| | |||| | ||| |||||||||| | | ||| Sbjct 19997 CAATCTTAGGG-GGCTGAATGCCACTTGTCTCTCTAAGAAGTTGGGGGATGCTGACCGCT 20055 Query 131 ---AGTCGATGGGGCTATTTAGCAGGTTA-----AG-GTCTCGTTCGTTATCGGAATTAA 181 || | ||| |||||| | | || ||||| | |||||| ||||||| Sbjct 20056 TGGAGGTCACATAACTAGTTAGCATGCCAGTGCCAGAGTCTCACTGGTTATCAGAATTAA 20115 Query 182 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAA 241 |||||||||| |||||||||||||||| |||||||||||| ||||||| ||| |||| Sbjct 20116 CCAGACAAATGGCTCCACCAACTAAGAATGGCCATGCACCAGCACCCATGGAACTGAGAA 20175 Query 242 AGAGCTATCAATCTGTC 258 ||||||||||||||||| Sbjct 20176 AGAGCTATCAATCTGTC 20192 >seq17 Length=63494081 Score = 158 bits (174), Expect = 2e-36 Identities = 192/257 (75%), Gaps = 15/257 (6%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 |||||||||| || ||||| |||| ||| ||||||||||||||||||||||||||| | Sbjct 63295284 GTCAGTGTAGTGCACGTGCAGCCCCAGACACCTAAGGGCATCACAGACCTGTTATTGC-T 63295226 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCA---CCAACCAT- 130 ||| ||| ||||| | |||| | ||| |||||||||| | | |||| Sbjct 63295225 CAATCTTAGGG-GGCTGAATGCCACTTGTCTCTCTAAGAAGTTGGGGGATGCTGACCACT 63295167 Query 131 ---AGTCGATGGGGCTATTTAGCAGGTTA-----AG-GTCTCGTTCGTTATCGGAATTAA 181 || | ||| |||||| | | || ||||| | |||||| ||||||| Sbjct 63295166 TGGAGGTCACATAACTAGTTAGCATGCCAGTGCCAGAGTCTCACTGGTTATCAGAATTAA 63295107 Query 182 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAA 241 |||||||||| ||||||||||||||||||||||||||||| ||||||| ||| |||| Sbjct 63295106 CCAGACAAATGGCTCCACCAACTAAGAACGGCCATGCACCAGCACCCATGGAACTGAGAA 63295047 Query 242 AGAGCTATCAATCTGTC 258 ||||||| ||||||||| Sbjct 63295046 AGAGCTACCAATCTGTC 63295030 Score = 158 bits (174), Expect = 2e-36 Identities = 192/257 (75%), Gaps = 15/257 (6%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 |||||||||| || ||||| |||| ||| ||||||||||||||||||||||||||| | Sbjct 63357525 GTCAGTGTAGTGCACGTGCAGCCCCAGACACCTAAGGGCATCACAGACCTGTTATTGC-T 63357467 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCA---CCAACCAT- 130 ||| ||| ||||| | |||| | ||| |||||||||| | | |||| Sbjct 63357466 CAATCTTAGGG-GGCTGAATGCCACTTGTCTCTCTAAGAAGTTGGGGGATGCTGACCACT 63357408 Query 131 ---AGTCGATGGGGCTATTTAGCAGGTTA-----AG-GTCTCGTTCGTTATCGGAATTAA 181 || | ||| |||||| | | || ||||| | |||||| ||||||| Sbjct 63357407 TGGAGGTCACATAACTAGTTAGCATGCCAGTGCCAGAGTCTCACTGGTTATCAGAATTAA 63357348 Query 182 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAA 241 |||||||||| ||||||||||||||||||||||||||||| ||||||| ||| |||| Sbjct 63357347 CCAGACAAATGGCTCCACCAACTAAGAACGGCCATGCACCAGCACCCATGGAACTGAGAA 63357288 Query 242 AGAGCTATCAATCTGTC 258 ||||||| ||||||||| Sbjct 63357287 AGAGCTACCAATCTGTC 63357271 Score = 152 bits (168), Expect = 8e-35 Identities = 191/257 (74%), Gaps = 15/257 (6%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 |||||||||| || ||||| |||| ||| ||||||||||||||||||||||||||| | Sbjct 63188604 GTCAGTGTAGTGCACGTGCAGCCCCAGACACCTAAGGGCATCACAGACCTGTTATTGC-T 63188546 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCA---CCAACCAT- 130 ||| ||| ||||| | |||| | ||| |||||||||| | | ||| Sbjct 63188545 CAATCTTAGGG-GGCTGAATGCCACTTGTCTCTCTAAGAAGTTGGGGGATGCTGACCGCT 63188487 Query 131 ---AGTCGATGGGGCTATTTAGCAGGTTA-----AG-GTCTCGTTCGTTATCGGAATTAA 181 || | ||| |||||| | | || ||||| | |||||| ||||||| Sbjct 63188486 TGGAGGTCACATAACTAGTTAGCATGCCAGTGCCAGAGTCTCACTGGTTATCAGAATTAA 63188427 Query 182 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAA 241 |||||||||| |||||||||||||||| |||||||||||| ||||||| ||| |||| Sbjct 63188426 CCAGACAAATGGCTCCACCAACTAAGAATGGCCATGCACCAGCACCCATGGAACTGAGAA 63188367 Query 242 AGAGCTATCAATCTGTC 258 ||||||||||||||||| Sbjct 63188366 AGAGCTATCAATCTGTC 63188350 Score = 149 bits (164), Expect = 1e-33 Identities = 190/257 (74%), Gaps = 15/257 (6%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 |||||||||| || ||||| |||| ||| ||||||||||||||||||||||||||| | Sbjct 63248309 GTCAGTGTAGTGCACGTGCAGCCCCAGACACCTAAGGGCATCACAGACCTGTTATTGC-T 63248251 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCA---CCAACCAT- 130 ||| ||| ||||| | |||| | ||| |||||||||| | | ||| Sbjct 63248250 CAATCTTAGGG-GGCTGAATGCCACTTGTCTCTCTAAGAAGTTGGGGGATGCTGACCGCT 63248192 Query 131 ---AGTCGATGGGGCTATTTAGCAGGTTA-----AG-GTCTCGTTCGTTATCGGAATTAA 181 || | ||| |||||| | | || ||||| | |||||| ||||||| Sbjct 63248191 TGGAGGTCACATAACTAGTTAGCATGCCAGTGCCAGAGTCTCACTAGTTATCAGAATTAA 63248132 Query 182 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAA 241 |||||||||| |||||||||| ||||| |||||||||||| ||||||| ||| |||| Sbjct 63248131 CCAGACAAATGGCTCCACCAACAAAGAATGGCCATGCACCAGCACCCATGGAACTGAGAA 63248072 Query 242 AGAGCTATCAATCTGTC 258 ||||||||||||||||| Sbjct 63248071 AGAGCTATCAATCTGTC 63248055 >seq19 Length=125939595 Score = 136 bits (150), Expect = 6e-30 Identities = 98/113 (87%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 146 TTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTA 205 |||||| | | |||||||| ||||||||||||||||||||||||| |||||||||| | Sbjct 40341720 TTAGCATGCCAGAGTCTCGTTTGTTATCGGAATTAACCAGACAAATCGCTCCACCAACCA 40341779 Query 206 AGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||| |||||||||||||||||| || || ||||||||||||| ||||||| Sbjct 40341780 AGAATAGCCATGCACCACCACCCACGGACTCGAGAAAGAGCTATCCATCTGTC 40341832 >seq6 Length=170843587 Score = 131 bits (144), Expect = 3e-28 Identities = 184/253 (73%), Gaps = 19/253 (8%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCC-CAGAACATCTAAGGGCATCACAGACCTGTTATTGCC 73 ||||||||||| | |||| ||| |||| || |||||||||||||||||||||||||| Sbjct 128759675 GTCAGTGTAGCATGAGTGCAGCCTCAGAT-ATGTAAGGGCATCACAGACCTGTTATTGC- 128759618 Query 74 TCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAG--------CCACCA 125 |||| || | |||||| | | || | ||||||| |||||| | ||||| Sbjct 128759617 TCAATCT-CGGGTGGCTGAATGGCACTTGTCCCTCCAAGAAGTTGGGGGGATGCCCACCG 128759559 Query 126 ACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAG 185 || | | ||| |||||| | | ||| |||| ||||| ||||||||| Sbjct 128759558 CTCAGGGGTCACATAACTAGTTAGCATGCCAGAATCTTGTTCATTATCAGAATTAACCT- 128759500 Query 186 ACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAG 245 ||||||| || |||||| ||||||||| ||||||||||| ||||| |||||||| Sbjct 128759499 ---AATCACTACA---ACTAAGTACGGCCATGTACCACCACCCACAGAATTGAGAAAGAG 128759446 Query 246 CTATCAATCTGTC 258 |||| |||||||| Sbjct 128759445 CTATTAATCTGTC 128759433 >seq9 Length=139512083 Score = 75.2 bits (82), Expect = 2e-11 Identities = 76/99 (77%), Gaps = 4/99 (4%) Strand=Plus/Minus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 ||||| ||| |||||||||||||||||| || |||||| |||||| |||||||| Sbjct 15890684 GTCTCATTCAATATCGGAATTAACCAGACTTTTC----CACCAATTAAGAATGGCCATGC 15890629 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGT 257 ||||| |||| ||| | || | ||| | ||| ||||| Sbjct 15890628 ACCACTTCCCACAGAGTTAATCATGAGTTGTCAGTCTGT 15890590 >seq16 Length=79944280 Score = 73.4 bits (80), Expect = 6e-11 Identities = 64/77 (83%), Gaps = 2/77 (3%) Strand=Plus/Minus Query 39 AGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCA 98 || || |||| |||||||||||||||||||||| ||||| | || |||||| | |||| Sbjct 2475021 AGGACTTCTAGGGGCATCACAGACCTGTTATTG-CTCAATC-TCGGGTGGCTGAACGCCA 2474964 Query 99 ATAGTCCCTCTAAGAAG 115 | |||||||||||||| Sbjct 2474963 CTTGTCCCTCTAAGAAG 2474947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796795268253