Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq7 349 6e-94 seq13 271 1e-70 seq8 255 1e-65 seq1 120 5e-25 seq15 105 1e-20 >seq7 Length=121844099 Score = 349 bits (386), Expect = 6e-94 Identities = 235/263 (89%), Gaps = 0/263 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 10867827 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 10867886 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| Sbjct 10867887 TTAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGA 10867946 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| Sbjct 10867947 CATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCC 10868006 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 ||||||||||||||||| |||||| || | ||| | | || | |||||||| ||| Sbjct 10868007 CTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCCAAAGGTCAGAAGGATCGTGAGG 10868066 Query 271 CCACACTTTCATGGTTTGTATTC 293 || | |||||| ||| ||||||| Sbjct 10868067 CCCCGCTTTCACGGTCTGTATTC 10868089 >seq13 Length=208334590 Score = 271 bits (300), Expect = 1e-70 Identities = 241/297 (81%), Gaps = 6/297 (2%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||| | | || ||||||||||||||||||||||||||||| Sbjct 68477991 TACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 68477932 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 || | ||||||||||| |||| ||||||| |||||||||||||||||||| |||| | Sbjct 68477931 GTGCCAGTCTAAACCCATCTCATGTTCCCTGTTAGTGGGTGAACAATCCAATGCTTGGTG 68477872 Query 120 AATTCTGCTTCGGTATGATAGG-AAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT 178 ||||||||||| |||||||| |||||||| ||| |||||||||||||| |||||||| Sbjct 68477871 AATTCTGCTTCATGATGATAGGAAAGAGCCGGCATTGAAGGATCAAAAAGTGACGTCGCT 68477812 Query 179 ATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGC 238 ||| | |||||| |||||||||||||||||||||||||||||||||| ||||| || Sbjct 68477811 ATGCAGTCTTGGCCACCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCT---GC 68477755 Query 239 CTCAAATTTCGAGGGACTAAAGGATCGATAGGCCAC-ACTTTCATGGTTTGTATTCA 294 | ||| | | || | |||||| | ||||| | |||||| ||| |||||||| Sbjct 68477754 TTAAAACCCCAAAGGTCAGAAGGATTGTGAGGCCCCTGCTTTCACGGTCTGTATTCA 68477698 >seq8 Length=138966237 Score = 255 bits (282), Expect = 1e-65 Identities = 216/265 (82%), Gaps = 3/265 (1%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCAT---GACGGTCTAAACCCAGCTCACGTTCC 87 ||||||||||||| |||||||||||||||| ||| ||||||||| ||||||| || Sbjct 53790208 TCATCAGTAGGGTGAAACTAACCTGTCTCACAAGGACAGTCTAAACCTAGCTCACTTTGG 53790149 Query 88 CTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGC 147 ||||| || ||||| ||||||| |||| |||||||||||| |||||| ||||||| Sbjct 53790148 TTATTACTGAGTGAATAATCCAAGGCTTGGTGAATTCTGCTTCACAATGATAAGAAGAGC 53790089 Query 148 CGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTA 207 ||||| ||||||||||| ||||| |||||||||||||||||| ||| ||||||||||| Sbjct 53790088 GGACATACAAGGATCAAAACGCAACATCGCTATGAACGCTTGGCCGCCTCAAGCCAGTTA 53790029 Query 208 TCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGAT 267 ||||| ||| |||||||||| |||||| || | ||| | | || | ||||||| Sbjct 53790028 TCCCTTTGGCAACTTTTCTGACACCTCCTGCTTAAAACCCCAAAGGTCAGAAGGATCATG 53789969 Query 268 AGGCCACACTTTCATGGTTTGTATT 292 ||||| |||||||||||| |||||| Sbjct 53789968 AGGCCCCACTTTCATGGTCTGTATT 53789944 Score = 237 bits (262), Expect = 3e-60 Identities = 229/293 (78%), Gaps = 1/293 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||| | | || ||||||||||||| | ||||||||| || Sbjct 42624004 TACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTGACCCTAACCTGTATC 42623945 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | || |||||||||||||||| | ||| |||||||||||||||||||||| |||| | Sbjct 42623944 AGGATGGTCTAAACCCAGCTCCCATTCTGTATTAGTGGGTGAACAATCCAATGCTTGGTG 42623885 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| ||||||||||||||| || | || |||||||||| || || || Sbjct 42623884 AATTCTGCTTCACAATGATAGGAAGAGCCAGCACCCAAAGATCAAAAAGTGACATCACTT 42623825 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||| ||||||| ||||||||||||||| |||||||||||||||||| ||| || | Sbjct 42623824 TGAAGGCTTGGCCGCCACAAGCCAGTTAGCCCTGTGGTAACTTTTCTTACACTTCCTGGT 42623765 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATT 292 | ||| | | || | |||||| | || || |||||||||||| | |||| Sbjct 42623764 TAAAACCCCAAAGGTCAGAAGGATTGTGAGACCCCACTTTCATGGTCTATATT 42623712 Score = 100 bits (110), Expect = 5e-19 Identities = 146/202 (72%), Gaps = 11/202 (5%) Strand=Plus/Plus Query 33 ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 |||||| |||||||||| ||| ||| | || || || | ||| ||||| ||| |||| Sbjct 92555813 ATCAGTTGGGTAAAACTGTCCTATCTTAAGATGGCCTGATTCCACCTCACATTCT-TATT 92555871 Query 93 AGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACA 152 ||||| ||||||||||||| ||| || |||||||| | | |||||||| || Sbjct 92555872 AGTGGATGAACAATCCAACACTTGATGAGGTCTGCTTC----TCA-GTGAAGAGCCAGCA 92555926 Query 153 TCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAG--CCAGTTATCC 210 | | ||| ||| || | || ||||||||| ||| |||||| | |||||||||| Sbjct 92555927 TTCAGGGACTAAACAGTAGAGTTGCTATGAACACTT---AGCCACATGTTCCAGTTATCC 92555983 Query 211 CTGTGGTAACTTTTCTGGCACC 232 | |||| ||||||| |||| Sbjct 92555984 TTAGAGTAAATTTTCTGACACC 92556005 >seq1 Length=274330532 Score = 120 bits (132), Expect = 5e-25 Identities = 124/160 (78%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 ||||||||||||||||||||||||||| ||| | ||| |||||||| | |||||||| Sbjct 70975423 CATCAGTAGGGTAAAACTAACCTGTCTGGAGACAATGTAATCCCAGCTCTCCTTCCCTAT 70975482 Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151 |||| |||||||||| ||| ||| || | |||||| |||| | | |||||| || Sbjct 70975483 TAGTAGGTGAACAAT-CAAAACTTGGTAAACTGTGCTTCACAATGACAAG-AGAGCCAAC 70975540 Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGC 191 | ||| || | ||||||| | || ||||||| | ||||| Sbjct 70975541 ACCGAGGGGTTGAAAAGCAGCATCACTATGAATGTTTGGC 70975580 >seq15 Length=140412725 Score = 105 bits (116), Expect = 1e-20 Identities = 84/101 (83%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 134 ATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTG 193 |||| ||||||||| |||| | ||||||| ||||| | ||| ||||| || |||||| Sbjct 31920826 ATGACAGGAAGAGCGGACAGCCAAGGATCGAAAAGTGATGTCACTATGCGTGCCTGGCTG 31920767 Query 194 CCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTC 234 |||||| |||||| || ||||||||||||||||| |||||| Sbjct 31920766 CCACAAACCAGTTGTCTCTGTGGTAACTTTTCTGACACCTC 31920726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854394762528