Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq352 197 3e-48 seq156 197 3e-48 seq360 116 7e-24 seq17 114 2e-23 seq6 102 2e-19 >seq352 Length=51932 Score = 197 bits (218), Expect = 3e-48 Identities = 201/258 (78%), Gaps = 3/258 (1%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 6347 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 6290 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||||||||||||||||||| | || || || | | Sbjct 6289 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTGTGCCTAC 6230 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||||| ||| |||||| | | || | | ||||| ||||||| | | |||| Sbjct 6229 CCTACGCCGGCAGGCGCGGGTAACCCGTTGAACCCCATTCGTGATGGGGATCGGGGATTG 6170 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | |||||||||| || |||||| ||| ||||| ||| ||||||||| Sbjct 6169 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTTGCGTTGATT 6110 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 6109 AAGTCCCTGCCCTTTGTA 6092 Score = 197 bits (218), Expect = 3e-48 Identities = 201/258 (78%), Gaps = 3/258 (1%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 44672 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 44729 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||||||||||||||||||| | || || || | | Sbjct 44730 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTGTGCCTAC 44789 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||||| ||| |||||| | | || | | ||||| ||||||| | | |||| Sbjct 44790 CCTACGCCGGCAGGCGCGGGTAACCCGTTGAACCCCATTCGTGATGGGGATCGGGGATTG 44849 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | |||||||||| || |||||| ||| ||||| ||| ||||||||| Sbjct 44850 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTTGCGTTGATT 44909 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 44910 AAGTCCCTGCCCTTTGTA 44927 >seq156 Length=16266 Score = 197 bits (218), Expect = 3e-48 Identities = 201/258 (78%), Gaps = 3/258 (1%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 8287 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 8344 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||||||||||||||||||| | || || || | | Sbjct 8345 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTGTGCCTAC 8404 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||||| ||| |||||| | | || | | ||||| ||||||| | | |||| Sbjct 8405 CCTACGCCGGCAGGCGCGGGTAACCCGTTGAACCCCATTCGTGATGGGGATCGGGGATTG 8464 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | |||||||||| || |||||| ||| ||||| ||| ||||||||| Sbjct 8465 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTTGCGTTGATT 8524 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 8525 AAGTCCCTGCCCTTTGTA 8542 >seq360 Length=54489 Score = 116 bits (128), Expect = 7e-24 Identities = 183/260 (70%), Gaps = 33/260 (13%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC--TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||| ||| | ||| ||| || | ||| ||||| ||||||||||||||| Sbjct 20036 CTTCTTAGAGAGACAAGTGGCATTCAGCCCCCT--AAGATTGAG-CAATAACAGGTCTGT 19980 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189 ||||||||||||||| |||| ||||| || |||||||||| Sbjct 19979 GATGCCCTTAGATGTCTGGGGCTGCACGTGCACTACACTGAC------------------ 19938 Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTG-TCGTGCTGGGGATAGAGCAT 248 |||| || | || ||||| | | | ||| ||| || || ||||||| | || Sbjct 19937 ----TGGCAGGCA---CT-GGTAA-CCCGCTGAACCCTGCTCATGATGGGGATCAGGGAT 19887 Query 249 TGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGA 308 |||||||||| | | | |||||||||| || |||||| | | |||| ||| | ||||| Sbjct 19886 TGCAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGTGAATCATAAGCTTGTGTTGA 19827 Query 309 TTACGTCCCTGCCCTTTGTA 328 ||| ||||||||| |||||| Sbjct 19826 TTAAGTCCCTGCCATTTGTA 19807 >seq17 Length=63494081 Score = 114 bits (126), Expect = 2e-23 Identities = 185/261 (71%), Gaps = 35/261 (13%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC--TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||| ||| | ||| ||| || | ||| ||||| ||||||||||||||| Sbjct 63295186 CTTCTTAGAGAGACAAGTGGCATTCAGCCCCCT--AAGATTGAG-CAATAACAGGTCTGT 63295242 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189 ||||||||||| ||| |||| ||||| || |||||||||| Sbjct 63295243 GATGCCCTTAGGTGTCTGGGGCTGCACGTGCACTACACTGAC------------------ 63295284 Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTG-TCGTGCTGGGGAT-AGAGCA 247 |||| || | |||| ||| | | | ||| ||| || || ||||||| |||| | Sbjct 63295285 ----TGGCAGGCA---CTGG-TAACCC-GCTGAACCCTGCTCATGATGGGGATCAGAG-A 63295334 Query 248 TTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTG 307 ||||||||||| | | | |||||||||| || |||||| | | |||| ||| | |||| Sbjct 63295335 TTGCAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGTGAATCATAAGCTTGTGTTG 63295394 Query 308 ATTACGTCCCTGCCCTTTGTA 328 |||| ||||||||| |||||| Sbjct 63295395 ATTAAGTCCCTGCCATTTGTA 63295415 Score = 111 bits (122), Expect = 3e-22 Identities = 182/260 (70%), Gaps = 33/260 (13%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC--TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||| ||| | ||| ||| || | ||| ||||| ||||||||||||||| Sbjct 63188506 CTTCTTAGAGAGACAAGTGGCATTCAGCCCCCT--AAGATTGAG-CAATAACAGGTCTGT 63188562 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189 ||||||||||| ||| |||| ||||| || |||||||||| Sbjct 63188563 GATGCCCTTAGGTGTCTGGGGCTGCACGTGCACTACACTGAC------------------ 63188604 Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTG-TCGTGCTGGGGATAGAGCAT 248 |||| || | |||| ||| | | | ||| ||| || || ||||||| | || Sbjct 63188605 ----TGGCAGGCA---CTGG-TAACCC-GCTGAACCCTGCTCATGATGGGGATCAGGGAT 63188655 Query 249 TGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGA 308 |||||||||| | | | |||||||||| || |||||| | | |||| ||| | ||||| Sbjct 63188656 TGCAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGTGAATCATAAGCTTGTGTTGA 63188715 Query 309 TTACGTCCCTGCCCTTTGTA 328 ||| ||||||||| |||||| Sbjct 63188716 TTAAGTCCCTGCCATTTGTA 63188735 Score = 111 bits (122), Expect = 3e-22 Identities = 182/260 (70%), Gaps = 33/260 (13%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC--TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||| ||| | ||| ||| || | ||| ||||| ||||||||||||||| Sbjct 63248211 CTTCTTAGAGAGACAAGTGGCATTCAGCCCCCT--AAGATTGAG-CAATAACAGGTCTGT 63248267 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189 ||||||||||| ||| |||| ||||| || |||||||||| Sbjct 63248268 GATGCCCTTAGGTGTCTGGGGCTGCACGTGCACTACACTGAC------------------ 63248309 Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTG-TCGTGCTGGGGATAGAGCAT 248 |||| || | |||| ||| | | | ||| ||| || || ||||||| | || Sbjct 63248310 ----TGGCAGGCA---CTGG-TAACCC-GCTGAACCCTGCTCATGATGGGGATCAGGGAT 63248360 Query 249 TGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGA 308 |||||||||| | | | |||||||||| || |||||| | | |||| ||| | ||||| Sbjct 63248361 TGCAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGTGAATCATAAGCTTGTGTTGA 63248420 Query 309 TTACGTCCCTGCCCTTTGTA 328 ||| ||||||||| |||||| Sbjct 63248421 TTAAGTCCCTGCCATTTGTA 63248440 Score = 111 bits (122), Expect = 3e-22 Identities = 182/260 (70%), Gaps = 33/260 (13%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC--TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||| ||| | ||| ||| || | ||| ||||| ||||||||||||||| Sbjct 63357427 CTTCTTAGAGAGACAAGTGGCATTCAGCCCCCT--AAGATTGAG-CAATAACAGGTCTGT 63357483 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189 ||||||||||| ||| |||| ||||| || |||||||||| Sbjct 63357484 GATGCCCTTAGGTGTCTGGGGCTGCACGTGCACTACACTGAC------------------ 63357525 Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTG-TCGTGCTGGGGATAGAGCAT 248 |||| || | |||| ||| | | | ||| ||| || || ||||||| | || Sbjct 63357526 ----TGGCAGGCA---CTGG-TAACCC-GCTGAACCCTGCTCATGATGGGGATCAGGGAT 63357576 Query 249 TGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGA 308 |||||||||| | | | |||||||||| || |||||| | | |||| ||| | ||||| Sbjct 63357577 TGCAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGTGAATCATAAGCTTGTGTTGA 63357636 Query 309 TTACGTCCCTGCCCTTTGTA 328 ||| ||||||||| |||||| Sbjct 63357637 TTAAGTCCCTGCCATTTGTA 63357656 >seq6 Length=170843587 Score = 102 bits (112), Expect = 2e-19 Identities = 144/196 (73%), Gaps = 5/196 (3%) Strand=Plus/Plus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTG-GGCCGCACGCGCGCTA 164 || ||||| ||||||||||||||||||||||||| || |||| ||| |||| | |||| Sbjct 128759611 AGATTGAG-CAATAACAGGTCTGTGATGCCCTTACAT-ATCTGAGGCTGCACTCATGCTA 128759668 Query 165 CACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAAC 224 ||||||| | || || || | | ||| ||| | ||| ||||||| | | || || Sbjct 128759669 CACTGACTGGCTCAGCGTGTGCCTACCCTATGCCAGCAGGCATGGGTAA-CATATTGAAT 128759727 Query 225 TCT-GTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTA 283 ||| | ||| || |||| | |||||| ||||| | | | || ||||||| || |||| Sbjct 128759728 TCTACTTGTGATGAGGATCAGGGATTGCAGTTATTCCCCATGAAGGAGGAATTCCCAGTA 128759787 Query 284 AGCGCGTGTCATCAGC 299 || | | ||||| ||| Sbjct 128759788 AGTGTGAGTCATAAGC 128759803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947194193664