Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq15 152 4e-32 seq4 104 2e-17 >seq15 Length=140412725 Score = 152 bits (168), Expect = 4e-32 Identities = 583/900 (65%), Gaps = 34/900 (4%) Strand=Plus/Plus Query 61041 AGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTA 61100 ||| || ||||| | || || | || || ||| | || | || || |||| ||||| Sbjct 19878825 AGAAAACCCTCGCTGCTTTGTCATCTTTCCTATCAAATACCATGACATCTGGCAGATGTA 19878884 Query 61101 CAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAA 61160 || ||||| || |||||||| ||||| | |||||||| | | ||||| | ||| | Sbjct 19878885 TAAGAAGGCAGAGGCTTCCTTTTGGACAGCTGAGGAGGTGGGCCTCTCCAAGGGCATTCA 19878944 Query 61161 TGACTGGGAG--CGTTTATCGAGCGGTGAACAACATTTCATTAAACATG-TGTTGGCGTT 61217 ||||||| | | | | || || | |||| ||| |||| | ||||| || Sbjct 19878945 ACACTGGGAAACCATGAAGCCTAAGGAGAG--ATATTTTATTTCACATCATCTTGGCTTT 19879002 Query 61218 CTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG-TTTCGCGCAGGAGG 61276 |||||| || || || ||||| |||| || || |||| | ||| || || || Sbjct 19879003 CTTTGCAGCAAGTGATGGCATCGTGGATGAAAACTTGGTGGAGTGGTTTAGC-CAAGAAA 19879061 Query 61277 TGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACT 61336 | || | | || || ||||||||||| |||||||| ||||||||||| || | || | Sbjct 19879062 TTCAGATTACAGAAGCTCGTTGTTTCTATGGCTTCCAAATTGCCATGGAAAACATACATT 19879121 Query 61337 CGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGAT 61396 | || ||||| || | ||||| ||||| ||||||| || ||| | ||| Sbjct 19879122 CTGAAATGTATAGCCTCCTCATTGATACTTACATCAAAGATTCCAAAGAAAGCGAATTTC 19879181 Query 61397 TGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATT 61456 | ||||||||||||||||| || || || ||| | | || || |||||||| | | Sbjct 19879182 TCTTCAATGCCATCGAGACAATGCCTTGTGTAAAGAAGGAGGCAGACTGGGCCTTGCACT 19879241 Query 61457 GGATCACCAGTACAA--CGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGA 61514 |||| | |||| |||| || ||| ||||| | | | ||||| | || || Sbjct 19879242 GGAT--GGGGGACAAAGAGGCTCCACGTGGAGAACGTGTCATCACCTTTGCTGCCGTGGA 19879299 Query 61515 GGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTAT 61574 || | || || ||| || ||||| | | || ||| | |||||||| ||||| || Sbjct 19879300 AGGAATTTTCTTTTCTGGTTCTTTTGCATCCACATTCTGGCTCAAGAAACGAGGACTGAT 19879359 Query 61575 GCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTT 61634 ||| || ||||| | || || || | || ||||| | || || || || Sbjct 19879360 GCCTGGCCTGACGT------AT-------TAGCA-GAGATGAGGGTTTACACTGCGACTT 19879405 Query 61635 TGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGA 61694 ||| || | ||||||| | ||| | | || |||||| || | ||| || Sbjct 19879406 TGCCTGCCTGATGTTCAAACTC---CTGCTACACAAACCTTCGGAGCAGAGAGTGAAAGA 19879462 Query 61695 GATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTC 61754 || | | || || | || |||||||| || | | || | |||| || Sbjct 19879463 AATAATCATCAATGCAGTTAGGATAGAACAGGAGTTCTTCATAGAGGAGCTGCCGGTGAA 19879522 Query 61755 ACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCT 61814 |||| || |||||||| ||||| ||||| ||||| || || || ||| | || Sbjct 19879523 GCTCACTGGGATGAATTGCACTTTAATGAAACAGTACATTGAGTTCGTGGCAGACAGACT 19879582 Query 61815 GTTGGTCGATTTGGGTATGAAGC--GGATCT-ATAATACGAAAAACCCATTTGATTTCAT 61871 | | || |||| | ||| || | | | | || ||||| ||| ||||| || || Sbjct 19879583 CAGGCTGGAGCTGGG-CTTCAGCAAGGTTTTCAGAGTA-GAAAATCCC-TTTGACTTTAT 19879639 Query 61872 GGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931 ||| | ||||| ||||| || |||||||| || | ||||| | |||||||| ||||| Sbjct 19879640 GGAGAATATTTCACTGGAAGGGAAGACGAACTTCTCTGAGAAGAGAGTAGGCGAGTATCA 19879699 >seq4 Length=130910915 Score = 104 bits (114), Expect = 2e-17 Identities = 87/107 (81%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 ||||||||||| || | ||||| || |||||||||||||| || ||| ||| |||||| Sbjct 34842974 CAGGAGGTGCAGGTTCCAGAGGCACGCTGTTTCTACGGCTTTCAAATTCTCATCGAGAAT 34843033 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376 || ||||| |||||||||||| | || || || || |||||||| || Sbjct 34843034 GTTCACTCAGAGATGTACAGTTTGCTAATAGACACTTACATCAGAGA 34843080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397565029794320