Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq12 89.7 2e-12 >seq12 Length=61602749 Score = 89.7 bits (98), Expect = 2e-12 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 349084 CTCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCCGGCAAAGTGGAA 349143 |||||| || | ||||| |||||||||||||||||||| | || |||||| ||||||| Sbjct 52800591 CTCCTTAAGGCGGGGCACACCCAGGGTCACGTTCTTGGCGGACACACCGGCATAGTGGAA 52800532 Query 349144 GGTCTGGAGGGTCAACTGCGTGAGGGGCTCGCCGATGCACTGGCCCGCGAGGATGCCTAC 349203 ||| | | ||||| ||| ||| ||| || || | | |||| | || || || || Sbjct 52800531 GGTGTTCAAGGTCATCTGGGTGGCGGGTTCTCCAAGGGACTGTGCAGCCAGAGCTCCCAC 52800472 Query 349204 CATCTCGCCGGG 349215 |||||| ||||| Sbjct 52800471 CATCTCTCCGGG 52800460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2084722426970174