Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09] 23,819 sequences; 2,301,379,344 total letters Query= AAMG01000140.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value seq23817 203 6e-50 seq23818 170 4e-40 >seq23817 Length=2840 Score = 203 bits (224), Expect = 6e-50 Identities = 241/324 (74%), Gaps = 7/324 (2%) Strand=Plus/Minus Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCG 70 ||||| |||||||||| |||||| ||| | || ||||| | |||||||| || | ||| Sbjct 2322 AGGGGAGTGAAATAGATCCTGAAACCGTGTGCATACAAACAGTCGGAGCGGACTTGTTCC 2263 Query 71 GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGG 130 |||||||||| ||||||| |||||| | | ||| ||| ||| |||||||||| Sbjct 2262 GTGACGGCGTACCTTTTGTATAATGGGTCAGCGACTTACAT-TCAGTGGCGAGGTTAACC 2204 Query 131 GCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGC 190 | | || ||||| || |||| |||| | ||||||||||| ||| | ||| Sbjct 2203 GAATAGGGG-----AGCCGTAGAGAAATCGAGTCCGAACAGGGCGAC-AGTCGCTGGGTG 2150 Query 191 TAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGG 250 ||||| ||||||| |||||||||||| | |||| ||||| |||||||| || ||| Sbjct 2149 TAGACCCGAAACCAGGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGG 2090 Query 251 AGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGC 310 ||| ||||||| || |||||||| || |||||| | ||||||||||||||||| Sbjct 2089 AGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGC 2030 Query 311 CAATCAAACTGGGAAATAGCTCGT 334 || ||||| |||||||||| || Sbjct 2029 TAAACAAACCTGGAAATAGCTGGT 2006 >seq23818 Length=1185 Score = 170 bits (188), Expect = 4e-40 Identities = 255/349 (73%), Gaps = 26/349 (7%) Strand=Plus/Minus Query 1 TAGCCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCC 60 || |||| | ||||| ||||||||| |||||| ||| | |||||||||| || ||||| Sbjct 670 TACCCCGGG-AGGGGAGTGAAATAGTACCTGAAACCGTGTGCCTACAAGCCGTGAGAGCC 612 Query 61 G-AGTGA-TTCGGTGACGG--------CGTGCCTTTTGCATAATGAGCCTACGAGTTAGT 110 ||| ||||| | ||| ||||||||||| | ||||||||| ||||||||| Sbjct 611 TTAGTTCCTTCGGGGGCGGGGTGATTGCGTGCCTTTTGAAGAATGAGCCTGCGAGTTAGT 552 Query 111 CGTCACCAGCGAGGTTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACA 170 || || | | | |||| | | || | |||||| || ||||||||| | |||| Sbjct 551 GGT-ACGTG-GCGTTTAACC-CGTGGGG---GGTAGCCGTAGCGAAAGCGAGTCCGAACA 498 Query 171 GGGCGAC-GAGTTGGTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGA 229 ||||| |||| | || |||||| |||| || |||||||||||| | |||||||| Sbjct 497 GGGCGTTTGAGTCGCGTGCCCTAGACCCGAAGCCGAGTGATCTACCCATGGCCAGGTTGA 438 Query 230 AGTCGCGG-TAA---CGCGTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGA 285 || ||||| ||| |||||| |||||||||||| | |||||||| | ||| Sbjct 437 AG-CGCGGGTAAGACCGCGTG---GAGGACCGAACCCACTTAGGTTGAAAACTGAGGGGA 382 Query 286 TGACTCGCGGGTAGGGGTGAAAGGCCAATCAAACTGGGAAATAGCTCGT 334 ||| | ||||||||||||||||||||||||||| || |||||| || Sbjct 381 TGAGCTGTGGGTAGGGGTGAAAGGCCAATCAAACTCGGTGATAGCTGGT 333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 972568288768