Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09] 23,819 sequences; 2,301,379,344 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq22515 179 6e-43 seq125 132 7e-29 seq19044 125 1e-26 seq51 95.1 2e-17 >seq22515 Length=1729 Score = 179 bits (198), Expect = 6e-43 Identities = 181/227 (80%), Gaps = 9/227 (4%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||| |||| ||||||| ||||||||| |||||| | Sbjct 180 GTACAAAGGGCAGGGACTTAATCAACGCAAGCT-GATGACTTGCGCTTACTGGGAATT-C 237 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAA-GATT 119 |||||| | | ||||||||||| | ||||| ||||||| ||||| |||| Sbjct 238 CTCGTTCATGGGGAACAATTGCAAGCCCCAATCCCTATCACGAATGGTTTTCACGCGATT 297 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACAT-CAGTGTAGCGCGCGTGC 178 |||| ||| |||| |||| | || || | || ||| ||||||||||||||||| Sbjct 298 TCCCGCTCCTCTCGGAGAAGGAAA---ACCCGCT-AACCCATTCAGTGTAGCGCGCGTGC 353 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 ||||||| |||||||||||||||||||||||||||||| ||||| || Sbjct 354 GGCCCAGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT 399 >seq125 Length=3337254 Score = 132 bits (146), Expect = 7e-29 Identities = 177/236 (75%), Gaps = 10/236 (4%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||| ||||| |||||| || ||| || |||||| | Sbjct 23885 GTACAAAGGGCAGGGACTTAATCAACGCAAGCTT-ATGACTTGCACTTCCTGGGAATT-C 23942 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 ||| || ||| || ||||||||| ||||||||||||| ||||| | || Sbjct 23943 CTCTTTCAAGGGGAATAATTGCAATCCCTGATCCCCATCACGAATGGGGTTCAACGGGTT 24002 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGT--TGAATACATCAGTGTAGCGCGCGTG 177 |||| |||| |||| || || ||| | | | ||| ||||||| |||||| || Sbjct 24003 ACCCAAGCCTGCCGGCATAG-TG-TAGGCACATGCTGAGCCAATCAGTGCAGCGCGTGTA 24060 Query 178 CGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||||||||||||||||||| ||||||||| ||||| || ||||| Sbjct 24061 --GCCCCGGACATCTAAGGGCATCACAGATCTGTTATTG-CTCAATCTCGGGTGGC 24113 >seq19044 Length=2450392 Score = 125 bits (138), Expect = 1e-26 Identities = 175/238 (74%), Gaps = 12/238 (5%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||| | ||||| ||||| | | |||| | |||||| | Sbjct 2386246 GTACAAAGGGCAGGGACTTAATCAACACAAGCTT-ATGACCCTCACTTAGTGGGAATT-C 2386189 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 || ||| | | || ||||||||| ||||||| ||||| | ||||| | || Sbjct 2386188 CTTGTTCATGGGGAATAATTGCAATCCCTGATCCCCAACACGAATGGAGTTCAACGGGTT 2386129 Query 120 ACCCGGACCTGTCGGCCAAGGT--GATAG--ACTCGTTGAATACATCAGTGTAGCGCGCG 175 ||||| |||| ||| || | ||| || | ||| ||||| |||| |||| Sbjct 2386128 ACCCGCGCCTG----CCATTGTTGGGTAGGCACACACTGAGCCAGTCAGTTTAGCACGCG 2386073 Query 176 TGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 ||| |||| | |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 2386072 TGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCTGGTGGC 2386016 >seq51 Length=29663373 Score = 95.1 bits (104), Expect = 2e-17 Identities = 124/169 (73%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 58 TTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA 117 ||||||||| | | || | ||||||| | ||||||||||||| ||||| | Sbjct 26251089 TTCCTCGTTCATGGGGAATACTTGCAATCCCCAATCCCCATCACGAATGGGGTTCAACGG 26251030 Query 118 -TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGT 176 ||||||| ||||| |||| |||| | | | ||| ||||||||||||| || Sbjct 26251029 GTTACCCGCACCTGCCGGCGAAGGGTAGGCATATGCTGAGCCAGTCAGTGTAGCGCGAGT 26250970 Query 177 GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 | |||| | ||||||| |||||||||||||||||||||| ||||| || Sbjct 26250969 ACAGCCCTGGACATCTACGGGCATCACAGACCTGTTATTG-CTCAATCT 26250922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751826478585