Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09]
23,819 sequences; 2,301,379,344 total letters
Query= AAMG01000185.1
Length=266
Score E
Sequences producing significant alignments: (Bits) Value
seq22515 179 6e-43
seq125 132 7e-29
seq19044 125 1e-26
seq51 95.1 2e-17
>seq22515
Length=1729
Score = 179 bits (198), Expect = 6e-43
Identities = 181/227 (80%), Gaps = 9/227 (4%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||||| || ||||||| |||| ||||||| ||||||||| |||||| |
Sbjct 180 GTACAAAGGGCAGGGACTTAATCAACGCAAGCT-GATGACTTGCGCTTACTGGGAATT-C 237
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAA-GATT 119
|||||| | | ||||||||||| | ||||| ||||||| ||||| ||||
Sbjct 238 CTCGTTCATGGGGAACAATTGCAAGCCCCAATCCCTATCACGAATGGTTTTCACGCGATT 297
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACAT-CAGTGTAGCGCGCGTGC 178
|||| ||| |||| |||| | || || | || ||| |||||||||||||||||
Sbjct 298 TCCCGCTCCTCTCGGAGAAGGAAA---ACCCGCT-AACCCATTCAGTGTAGCGCGCGTGC 353
Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225
||||||| |||||||||||||||||||||||||||||| ||||| ||
Sbjct 354 GGCCCAGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT 399
>seq125
Length=3337254
Score = 132 bits (146), Expect = 7e-29
Identities = 177/236 (75%), Gaps = 10/236 (4%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||||| || ||||||| ||||| |||||| || ||| || |||||| |
Sbjct 23885 GTACAAAGGGCAGGGACTTAATCAACGCAAGCTT-ATGACTTGCACTTCCTGGGAATT-C 23942
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119
||| || ||| || ||||||||| ||||||||||||| ||||| | ||
Sbjct 23943 CTCTTTCAAGGGGAATAATTGCAATCCCTGATCCCCATCACGAATGGGGTTCAACGGGTT 24002
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGT--TGAATACATCAGTGTAGCGCGCGTG 177
|||| |||| |||| || || ||| | | | ||| ||||||| |||||| ||
Sbjct 24003 ACCCAAGCCTGCCGGCATAG-TG-TAGGCACATGCTGAGCCAATCAGTGCAGCGCGTGTA 24060
Query 178 CGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233
|||| | |||||||||||||||||||| ||||||||| ||||| || |||||
Sbjct 24061 --GCCCCGGACATCTAAGGGCATCACAGATCTGTTATTG-CTCAATCTCGGGTGGC 24113
>seq19044
Length=2450392
Score = 125 bits (138), Expect = 1e-26
Identities = 175/238 (74%), Gaps = 12/238 (5%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||||| || ||||| | ||||| ||||| | | |||| | |||||| |
Sbjct 2386246 GTACAAAGGGCAGGGACTTAATCAACACAAGCTT-ATGACCCTCACTTAGTGGGAATT-C 2386189
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119
|| ||| | | || ||||||||| ||||||| ||||| | ||||| | ||
Sbjct 2386188 CTTGTTCATGGGGAATAATTGCAATCCCTGATCCCCAACACGAATGGAGTTCAACGGGTT 2386129
Query 120 ACCCGGACCTGTCGGCCAAGGT--GATAG--ACTCGTTGAATACATCAGTGTAGCGCGCG 175
||||| |||| ||| || | ||| || | ||| ||||| |||| ||||
Sbjct 2386128 ACCCGCGCCTG----CCATTGTTGGGTAGGCACACACTGAGCCAGTCAGTTTAGCACGCG 2386073
Query 176 TGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233
||| |||| | |||||||||||||||||||||||||||||| ||||| || |||||
Sbjct 2386072 TGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCTGGTGGC 2386016
>seq51
Length=29663373
Score = 95.1 bits (104), Expect = 2e-17
Identities = 124/169 (73%), Gaps = 2/169 (1%)
Strand=Plus/Minus
Query 58 TTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA 117
||||||||| | | || | ||||||| | ||||||||||||| ||||| |
Sbjct 26251089 TTCCTCGTTCATGGGGAATACTTGCAATCCCCAATCCCCATCACGAATGGGGTTCAACGG 26251030
Query 118 -TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGT 176
||||||| ||||| |||| |||| | | | ||| ||||||||||||| ||
Sbjct 26251029 GTTACCCGCACCTGCCGGCGAAGGGTAGGCATATGCTGAGCCAGTCAGTGTAGCGCGAGT 26250970
Query 177 GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225
| |||| | ||||||| |||||||||||||||||||||| ||||| ||
Sbjct 26250969 ACAGCCCTGGACATCTACGGGCATCACAGACCTGTTATTG-CTCAATCT 26250922
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 751826478585
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |